[Tikzdevice-bugs] [R-Forge] tikzDevice 0.4.5

[Cameron Bracken]

The output you show now matches what we get.  I did notice one small
noncritical typo giving the "* checking Rd \usage sections" warning.  This
can be easily fixed. Otherwise, despite our best attempts we have not been
able to resolve the other warnings.  We have tested on windows mac and linux
and have not observed any unsatisfactory behavior.  Otherwise all the other
steps before submitting have been completed successfully (such as running R
CMD Rd2dvi).
-Cameron



On Mon, Aug 10, 2009 at 8:10 AM, Kurt Hornik <Kurt.Hornik at wu.ac.at> wrote:

> >>>>> Cameron Bracken writes:
>
> > I do not get this error, nor is this present on R-forge. I strongly
> suspect
> > that it is a problem with missing LaTeX packages when building the
> vignette.
> > I cannot tell exactly which one because the errors are very
> > cryptic.  The LaTeX packages on which out vignette depends are:
> > couriers
> > hyperref
> > ulem
> > tikz (version 2.00)
> > parskip
> > geometry
> > epigraph
> > multicol
> > graphicx
> > float
> > natbib
>
> I rechecked with r-release, with basically the same results, see below.
>
> You're saying you're not getting the warnings?
>
> -k
>
> * using log directory '/home/Hornik/tmp/CRAN/ZZZ/tikzDevice.Rcheck'
> * using R version 2.9.1 Patched (2009-08-07 r49108)
> * using session charset: UTF-8
> * checking for file 'tikzDevice/DESCRIPTION' ... OK
> * checking extension type ... Package
> * this is package 'tikzDevice' version '0.4.5'
> * checking package name space information ... OK
> * checking package dependencies ... OK
> * checking if this is a source package ... OK
> * checking for executable files ... OK
> * checking whether package 'tikzDevice' can be installed ... OK
> * checking package directory ... OK
> * checking for portable file names ... OK
> * checking for sufficient/correct file permissions ... OK
> * checking DESCRIPTION meta-information ... OK
> * checking top-level files ... OK
> * checking index information ... OK
> * checking package subdirectories ... OK
> * checking R files for non-ASCII characters ... OK
> * checking R files for syntax errors ... OK
> * checking whether the package can be loaded ... OK
> * checking whether the package can be loaded with stated dependencies ...
> OK
> * checking whether the name space can be loaded with stated dependencies
> ... OK
> * checking for unstated dependencies in R code ... WARNING
> pdfTeX using libpoppler 3.141592-1.40.3-2.2 (Web2C 7.5.6)
> kpathsea version 3.5.6
> Copyright 2007 Peter Breitenlohner (eTeX)/Han The Thanh (pdfTeX).
> Kpathsea is copyright 2007 Karl Berry and Olaf Weber.
> There is NO warranty.  Redistribution of this software is
> covered by the terms of both the pdfTeX using libpoppler copyright and
> the Lesser GNU General Public License.
> For more information about these matters, see the file
> named COPYING and the pdfTeX using libpoppler source.
> Primary author of pdfTeX using libpoppler: Peter Breitenlohner (eTeX)/Han
> The Thanh (pdfTeX).
> Kpathsea written by Karl Berry, Olaf Weber, and others.
>
> Compiled with libpng 1.2.35; using libpng 1.2.38
> Compiled with zlib 1.2.3.3; using zlib 1.2.3.3
> Compiled with libpoppler version 0.10.5
>
> See the information on DESCRIPTION files in the chapter 'Creating R
> packages' of the 'Writing R Extensions' manual.
> * checking S3 generic/method consistency ... WARNING
> pdfTeX using libpoppler 3.141592-1.40.3-2.2 (Web2C 7.5.6)
> kpathsea version 3.5.6
> Copyright 2007 Peter Breitenlohner (eTeX)/Han The Thanh (pdfTeX).
> Kpathsea is copyright 2007 Karl Berry and Olaf Weber.
> There is NO warranty.  Redistribution of this software is
> covered by the terms of both the pdfTeX using libpoppler copyright and
> the Lesser GNU General Public License.
> For more information about these matters, see the file
> named COPYING and the pdfTeX using libpoppler source.
> Primary author of pdfTeX using libpoppler: Peter Breitenlohner (eTeX)/Han
> The Thanh (pdfTeX).
> Kpathsea written by Karl Berry, Olaf Weber, and others.
>
> Compiled with libpng 1.2.35; using libpng 1.2.38
> Compiled with zlib 1.2.3.3; using zlib 1.2.3.3
> Compiled with libpoppler version 0.10.5
>
> See section 'Generic functions and methods' of the 'Writing R Extensions'
> manual.
> * checking replacement functions ... WARNING
> pdfTeX using libpoppler 3.141592-1.40.3-2.2 (Web2C 7.5.6)
> kpathsea version 3.5.6
> Copyright 2007 Peter Breitenlohner (eTeX)/Han The Thanh (pdfTeX).
> Kpathsea is copyright 2007 Karl Berry and Olaf Weber.
> There is NO warranty.  Redistribution of this software is
> covered by the terms of both the pdfTeX using libpoppler copyright and
> the Lesser GNU General Public License.
> For more information about these matters, see the file
> named COPYING and the pdfTeX using libpoppler source.
> Primary author of pdfTeX using libpoppler: Peter Breitenlohner (eTeX)/Han
> The Thanh (pdfTeX).
> Kpathsea written by Karl Berry, Olaf Weber, and others.
>
> Compiled with libpng 1.2.35; using libpng 1.2.38
> Compiled with zlib 1.2.3.3; using zlib 1.2.3.3
> Compiled with libpoppler version 0.10.5
>
> In R, the argument of a replacement function which corresponds to the right
> hand side must be named 'value'.
> * checking foreign function calls ... WARNING
> pdfTeX using libpoppler 3.141592-1.40.3-2.2 (Web2C 7.5.6)
> kpathsea version 3.5.6
> Copyright 2007 Peter Breitenlohner (eTeX)/Han The Thanh (pdfTeX).
> Kpathsea is copyright 2007 Karl Berry and Olaf Weber.
> There is NO warranty.  Redistribution of this software is
> covered by the terms of both the pdfTeX using libpoppler copyright and
> the Lesser GNU General Public License.
> For more information about these matters, see the file
> named COPYING and the pdfTeX using libpoppler source.
> Primary author of pdfTeX using libpoppler: Peter Breitenlohner (eTeX)/Han
> The Thanh (pdfTeX).
> Kpathsea written by Karl Berry, Olaf Weber, and others.
>
> Compiled with libpng 1.2.35; using libpng 1.2.38
> Compiled with zlib 1.2.3.3; using zlib 1.2.3.3
> Compiled with libpoppler version 0.10.5
>
> See the chapter 'System and foreign language interfaces' of the 'Writing R
> Extensions' manual.
> * checking R code for possible problems ... NOTE
> pdfTeX using libpoppler 3.141592-1.40.3-2.2 (Web2C 7.5.6)
> kpathsea version 3.5.6
> Copyright 2007 Peter Breitenlohner (eTeX)/Han The Thanh (pdfTeX).
> Kpathsea is copyright 2007 Karl Berry and Olaf Weber.
> There is NO warranty.  Redistribution of this software is
> covered by the terms of both the pdfTeX using libpoppler copyright and
> the Lesser GNU General Public License.
> For more information about these matters, see the file
> named COPYING and the pdfTeX using libpoppler source.
> Primary author of pdfTeX using libpoppler: Peter Breitenlohner (eTeX)/Han
> The Thanh (pdfTeX).
> Kpathsea written by Karl Berry, Olaf Weber, and others.
>
> Compiled with libpng 1.2.35; using libpng 1.2.38
> Compiled with zlib 1.2.3.3; using zlib 1.2.3.3
> Compiled with libpoppler version 0.10.5
>
> queryMetricsDictionary: no visible binding for global variable
>  ‘dictionary’
> pdfTeX using libpoppler 3.141592-1.40.3-2.2 (Web2C 7.5.6)
> kpathsea version 3.5.6
> Copyright 2007 Peter Breitenlohner (eTeX)/Han The Thanh (pdfTeX).
> Kpathsea is copyright 2007 Karl Berry and Olaf Weber.
> There is NO warranty.  Redistribution of this software is
> covered by the terms of both the pdfTeX using libpoppler copyright and
> the Lesser GNU General Public License.
> For more information about these matters, see the file
> named COPYING and the pdfTeX using libpoppler source.
> Primary author of pdfTeX using libpoppler: Peter Breitenlohner (eTeX)/Han
> The Thanh (pdfTeX).
> Kpathsea written by Karl Berry, Olaf Weber, and others.
>
> Compiled with libpng 1.2.35; using libpng 1.2.38
> Compiled with zlib 1.2.3.3; using zlib 1.2.3.3
> Compiled with libpoppler version 0.10.5
>
> * checking Rd files ... OK
> * checking Rd files against version 2 parser ... OK
> * checking Rd cross-references ... OK
> * checking for missing documentation entries ... WARNING
> pdfTeX using libpoppler 3.141592-1.40.3-2.2 (Web2C 7.5.6)
> kpathsea version 3.5.6
> Copyright 2007 Peter Breitenlohner (eTeX)/Han The Thanh (pdfTeX).
> Kpathsea is copyright 2007 Karl Berry and Olaf Weber.
> There is NO warranty.  Redistribution of this software is
> covered by the terms of both the pdfTeX using libpoppler copyright and
> the Lesser GNU General Public License.
> For more information about these matters, see the file
> named COPYING and the pdfTeX using libpoppler source.
> Primary author of pdfTeX using libpoppler: Peter Breitenlohner (eTeX)/Han
> The Thanh (pdfTeX).
> Kpathsea written by Karl Berry, Olaf Weber, and others.
>
> Compiled with libpng 1.2.35; using libpng 1.2.38
> Compiled with zlib 1.2.3.3; using zlib 1.2.3.3
> Compiled with libpoppler version 0.10.5
>
> All user-level objects in a package should have documentation entries.
> See the chapter 'Writing R documentation files' in manual 'Writing R
> Extensions'.
> * checking for code/documentation mismatches ... WARNING
> pdfTeX using libpoppler 3.141592-1.40.3-2.2 (Web2C 7.5.6)
> kpathsea version 3.5.6
> Copyright 2007 Peter Breitenlohner (eTeX)/Han The Thanh (pdfTeX).
> Kpathsea is copyright 2007 Karl Berry and Olaf Weber.
> There is NO warranty.  Redistribution of this software is
> covered by the terms of both the pdfTeX using libpoppler copyright and
> the Lesser GNU General Public License.
> For more information about these matters, see the file
> named COPYING and the pdfTeX using libpoppler source.
> Primary author of pdfTeX using libpoppler: Peter Breitenlohner (eTeX)/Han
> The Thanh (pdfTeX).
> Kpathsea written by Karl Berry, Olaf Weber, and others.
>
> Compiled with libpng 1.2.35; using libpng 1.2.38
> Compiled with zlib 1.2.3.3; using zlib 1.2.3.3
> Compiled with libpoppler version 0.10.5
>
> pdfTeX using libpoppler 3.141592-1.40.3-2.2 (Web2C 7.5.6)
> kpathsea version 3.5.6
> Copyright 2007 Peter Breitenlohner (eTeX)/Han The Thanh (pdfTeX).
> Kpathsea is copyright 2007 Karl Berry and Olaf Weber.
> There is NO warranty.  Redistribution of this software is
> covered by the terms of both the pdfTeX using libpoppler copyright and
> the Lesser GNU General Public License.
> For more information about these matters, see the file
> named COPYING and the pdfTeX using libpoppler source.
> Primary author of pdfTeX using libpoppler: Peter Breitenlohner (eTeX)/Han
> The Thanh (pdfTeX).
> Kpathsea written by Karl Berry, Olaf Weber, and others.
>
> Compiled with libpng 1.2.35; using libpng 1.2.38
> Compiled with zlib 1.2.3.3; using zlib 1.2.3.3
> Compiled with libpoppler version 0.10.5
>
> pdfTeX using libpoppler 3.141592-1.40.3-2.2 (Web2C 7.5.6)
> kpathsea version 3.5.6
> Copyright 2007 Peter Breitenlohner (eTeX)/Han The Thanh (pdfTeX).
> Kpathsea is copyright 2007 Karl Berry and Olaf Weber.
> There is NO warranty.  Redistribution of this software is
> covered by the terms of both the pdfTeX using libpoppler copyright and
> the Lesser GNU General Public License.
> For more information about these matters, see the file
> named COPYING and the pdfTeX using libpoppler source.
> Primary author of pdfTeX using libpoppler: Peter Breitenlohner (eTeX)/Han
> The Thanh (pdfTeX).
> Kpathsea written by Karl Berry, Olaf Weber, and others.
>
> Compiled with libpng 1.2.35; using libpng 1.2.38
> Compiled with zlib 1.2.3.3; using zlib 1.2.3.3
> Compiled with libpoppler version 0.10.5
>
> * checking Rd \usage sections ... WARNING
> Bad \usage lines found in documentation object 'tikz':
>  tikz(file = "Rplots.tex", width = 7, height = 7,
>        bg="white", fg="black", standAlone = FALSE, bareBones = FALSE,
>        documentDeclaration = getOption("tikzDocumentDeclaration"),
>        packages = getOption("tikzLatexPackages"),
>        footer = getOption("tikzFooter")))
>
> Functions with \usage entries need to have the appropriate \alias entries,
> and all their arguments documented.
> The \usage entries must correspond to syntactically valid R code.
> See the chapter 'Writing R documentation files' in manual 'Writing R
> Extensions'.
> pdfTeX using libpoppler 3.141592-1.40.3-2.2 (Web2C 7.5.6)
> kpathsea version 3.5.6
> Copyright 2007 Peter Breitenlohner (eTeX)/Han The Thanh (pdfTeX).
> Kpathsea is copyright 2007 Karl Berry and Olaf Weber.
> There is NO warranty.  Redistribution of this software is
> covered by the terms of both the pdfTeX using libpoppler copyright and
> the Lesser GNU General Public License.
> For more information about these matters, see the file
> named COPYING and the pdfTeX using libpoppler source.
> Primary author of pdfTeX using libpoppler: Peter Breitenlohner (eTeX)/Han
> The Thanh (pdfTeX).
> Kpathsea written by Karl Berry, Olaf Weber, and others.
>
> Compiled with libpng 1.2.35; using libpng 1.2.38
> Compiled with zlib 1.2.3.3; using zlib 1.2.3.3
> Compiled with libpoppler version 0.10.5
>
> The \usage entries for S3 methods should use the \method markup and not
> their full name.
> See the chapter 'Writing R documentation files' in manual 'Writing R
> Extensions'.
> * checking line endings in C/C++/Fortran sources/headers ... OK
> * checking line endings in Makefiles ... OK
> * checking for portable use of $BLAS_LIBS ... OK
> * checking examples ... OK
> * checking package vignettes in 'inst/doc' ... NOTE
> pdfTeX using libpoppler 3.141592-1.40.3-2.2 (Web2C 7.5.6)
> kpathsea version 3.5.6
> Copyright 2007 Peter Breitenlohner (eTeX)/Han The Thanh (pdfTeX).
> Kpathsea is copyright 2007 Karl Berry and Olaf Weber.
> There is NO warranty.  Redistribution of this software is
> covered by the terms of both the pdfTeX using libpoppler copyright and
> the Lesser GNU General Public License.
> For more information about these matters, see the file
> named COPYING and the pdfTeX using libpoppler source.
> Primary author of pdfTeX using libpoppler: Peter Breitenlohner (eTeX)/Han
> The Thanh (pdfTeX).
> Kpathsea written by Karl Berry, Olaf Weber, and others.
> Compiled with libpng 1.2.35; using libpng 1.2.38
> Compiled with zlib 1.2.3.3; using zlib 1.2.3.3
> Compiled with libpoppler version 0.10.5
> This is pdfTeXk, Version 3.141592-1.40.3 (Web2C 7.5.6)
>  %&-line parsing enabled.
> entering extended mode
> ! I can't write on file `texput.log'.
> Please type another transcript file name>
> * checking PDF version of manual ... OK
>
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