[Stpp-commits] r36 - in pkg: doc man

noreply at r-forge.r-project.org noreply at r-forge.r-project.org
Fri Jul 22 10:32:45 CEST 2011 

Author: gabriele
Date: 2011-07-22 10:32:44 +0200 (Fri, 22 Jul 2011)
New Revision: 36

Added:
   pkg/doc/stpp.aux
   pkg/doc/stpp.bbl
   pkg/doc/stpp.blg
   pkg/doc/stpp.dvi
   pkg/doc/stpp.log
   pkg/doc/stpp.pdf
   pkg/doc/stpp.tex
Removed:
   pkg/doc/docV2.pdf
   pkg/doc/docV2.tex
Modified:
   pkg/doc/docV2.aux
   pkg/doc/docV2.dvi
   pkg/doc/docV2.log
   pkg/man/fmd.Rd
Log:


Modified: pkg/doc/docV2.aux
===================================================================
--- pkg/doc/docV2.aux	2011-07-21 13:50:51 UTC (rev 35)
+++ pkg/doc/docV2.aux	2011-07-22 08:32:44 UTC (rev 36)
@@ -13,27 +13,27 @@
 \@writefile{toc}{\contentsline {subsection}{\numberline {2.5}Space-time inhomogeneous $K$-function}{5}}
 \@writefile{lof}{\contentsline {figure}{\numberline {3}{\ignorespaces Contour plot (left) and perspective plot (right) of the STIK function estimated from FMD data.}}{6}}
 \newlabel{fig:stik}{{3}{6}}
-\@writefile{toc}{\contentsline {section}{\numberline {3}Models}{7}}
-\@writefile{toc}{\contentsline {subsection}{\numberline {3.1}Poisson process}{7}}
-\newlabel{sec:Poisson}{{3.1}{7}}
-\@writefile{toc}{\contentsline {subsection}{\numberline {3.2}Poisson cluster process}{9}}
-\newlabel{sec:pcp}{{3.2}{9}}
-\@writefile{toc}{\contentsline {subsection}{\numberline {3.3}Interaction processes}{10}}
-\newlabel{sec:inhib}{{3.3}{10}}
-\@writefile{lof}{\contentsline {figure}{\numberline {4}{\ignorespaces Inhibition functions implemented in {\tt  rinter}; {\it  left}: step, {\it  right}: gaussian.}}{12}}
-\newlabel{fig:hinhib}{{4}{12}}
-\@writefile{lof}{\contentsline {figure}{\numberline {5}{\ignorespaces Contagious functions implemented in {\tt  rinter}; {\it  left}: step, {\it  right}: gaussian.}}{13}}
-\newlabel{fig:hcont}{{5}{13}}
-\@writefile{toc}{\contentsline {subsection}{\numberline {3.4}Infectious processes}{14}}
-\@writefile{lof}{\contentsline {figure}{\numberline {6}{\ignorespaces Illustration of $\mu (t)$ for $h$ as a step function (left) or a gaussian function (right).}}{16}}
-\newlabel{fig:cuminfec}{{6}{16}}
-\@writefile{toc}{\contentsline {subsection}{\numberline {3.5}Log-Gaussian Cox processes}{17}}
-\newlabel{eq:sepcov}{{1}{18}}
-\newlabel{eq:GneitingCov}{{2}{18}}
-\@writefile{lot}{\contentsline {table}{\numberline {1}{\ignorespaces {\em  Some classes of isotropic covariance functions.}}}{19}}
-\newlabel{tab:modcov}{{1}{19}}
-\@writefile{lot}{\contentsline {table}{\numberline {2}{\ignorespaces {\em  Range of the parameters defining Equation (2\hbox {}).}}}{19}}
-\newlabel{tab:nsst}{{2}{19}}
+\@writefile{toc}{\contentsline {section}{\numberline {3}Models}{6}}
+\@writefile{toc}{\contentsline {subsection}{\numberline {3.1}Poisson process}{6}}
+\newlabel{sec:Poisson}{{3.1}{6}}
+\@writefile{toc}{\contentsline {subsection}{\numberline {3.2}Poisson cluster process}{8}}
+\newlabel{sec:pcp}{{3.2}{8}}
+\@writefile{toc}{\contentsline {subsection}{\numberline {3.3}Interaction processes}{9}}
+\newlabel{sec:inhib}{{3.3}{9}}
+\@writefile{lof}{\contentsline {figure}{\numberline {4}{\ignorespaces Inhibition functions implemented in {\tt  rinter}; {\it  left}: step, {\it  right}: gaussian.}}{11}}
+\newlabel{fig:hinhib}{{4}{11}}
+\@writefile{lof}{\contentsline {figure}{\numberline {5}{\ignorespaces Contagious functions implemented in {\tt  rinter}; {\it  left}: step, {\it  right}: gaussian.}}{11}}
+\newlabel{fig:hcont}{{5}{11}}
+\@writefile{toc}{\contentsline {subsection}{\numberline {3.4}Infectious processes}{13}}
+\@writefile{lof}{\contentsline {figure}{\numberline {6}{\ignorespaces Illustration of $\mu (t)$ for $h$ as a step function (left) or a gaussian function (right).}}{14}}
+\newlabel{fig:cuminfec}{{6}{14}}
+\@writefile{toc}{\contentsline {subsection}{\numberline {3.5}Log-Gaussian Cox processes}{15}}
+\newlabel{eq:sepcov}{{1}{16}}
+\@writefile{lot}{\contentsline {table}{\numberline {1}{\ignorespaces {\em  Some classes of isotropic covariance functions.}}}{17}}
+\newlabel{tab:modcov}{{1}{17}}
+\newlabel{eq:GneitingCov}{{2}{17}}
+\@writefile{lot}{\contentsline {table}{\numberline {2}{\ignorespaces {\em  Range of the parameters defining Equation (2\hbox {}).}}}{17}}
+\newlabel{tab:nsst}{{2}{17}}
 \bibcite{baddeley2000}{1}
 \bibcite{baddeley2005}{2}
 \bibcite{becker}{3}

Modified: pkg/doc/docV2.dvi
===================================================================
(Binary files differ)

Modified: pkg/doc/docV2.log
===================================================================
--- pkg/doc/docV2.log	2011-07-21 13:50:51 UTC (rev 35)
+++ pkg/doc/docV2.log	2011-07-22 08:32:44 UTC (rev 36)
@@ -1,4 +1,4 @@
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+This is pdfTeX, Version 3.1415926-1.40.8-alpha-20080323 (MiKTeX 2.7) (preloaded format=latex 2008.7.6)  21 JUL 2011 15:53
 entering extended mode
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 ("C:/Documents and Settings/edith/Mes documents/stppWorking/pkg/doc/docV2.tex"
@@ -186,42 +186,22 @@
 
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-File: ./figures/inhibgauss.eps Graphic file (type eps)
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-File: ./figures/contstep.eps Graphic file (type eps)
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-<./figures/contstep.eps>
-File: ./figures/contgauss.eps Graphic file (type eps)
- <./figures/contgauss.eps> [12]
+ [10] [11]
 Overfull \hbox (10.39963pt too wide) in paragraph at lines 875--875
 [][]\OT1/cmtt/m/n/10.95 > cont1 = rinter(npoints=250, s.region=northcumbria, t.
 region=c(1,200), thetas=0,[] 
  []
 
-[13]
+[12]
 Overfull \hbox (16.14832pt too wide) in paragraph at lines 918--918
 [][]\OT1/cmtt/m/n/10.95 > plot(d, hs(d0.2,0.1,0.1), xlab="", ylab="", type="l",
  ylim=c(0,1), lwd=2, las=1)[] 
@@ -233,22 +213,14 @@
  FROM A CON-TA-GIOUS PRO-CESS WHICH
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-[14]
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+[13]
 Overfull \hbox (2.81258pt too wide) in paragraph at lines 1016--1016
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-File: ./figures/infection.gaussian.ps Graphic file (type eps)
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-File: ./figures/cumulative.step.ps Graphic file (type eps)
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-File: ./figures/cumulative.gaussian.ps Graphic file (type eps)
 
-<./figures/cumulative.gaussian.ps>
 Overfull \hbox (1.15958pt too wide) in paragraph at lines 1035--1047
 []\OT1/cmr/m/n/10.95 The func-tion []\OT1/cmtt/m/n/10.95 rinfec \OT1/cmr/m/n/10
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 LaTeX Warning: `h' float specifier changed to `ht'.
 
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[TRUNCATED]

To get the complete diff run:
    svnlook diff /svnroot/stpp -r 36

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