[Stacomir-commits] r367 - in pkg/stacomir: R data inst/config inst/examples man
noreply at r-forge.r-project.org
noreply at r-forge.r-project.org
Tue May 16 21:11:14 CEST 2017
Author: briand
Date: 2017-05-16 21:11:13 +0200 (Tue, 16 May 2017)
New Revision: 367
Added:
pkg/stacomir/data/bmmCE.rda
pkg/stacomir/man/bmmCE.Rd
Modified:
pkg/stacomir/R/data.r
pkg/stacomir/inst/config/generate_Roxygen2.R
pkg/stacomir/inst/config/generate_data.R
pkg/stacomir/inst/examples/bilanMigrationMultConditionEnv_example.R
pkg/stacomir/man/BilanMigrationMultConditionEnv-class.Rd
Log:
creating and documenting bmmCE dataset
Modified: pkg/stacomir/R/data.r
===================================================================
--- pkg/stacomir/R/data.r 2017-05-16 14:51:03 UTC (rev 366)
+++ pkg/stacomir/R/data.r 2017-05-16 19:11:13 UTC (rev 367)
@@ -386,4 +386,18 @@
#' \item{horodatefin}{object of class \code{RefHorodate-class} : the end date selected}
#' }
#' @keywords data
-"bmC"
\ No newline at end of file
+"bmC"
+
+
+
+#' An object of class BilanMigrationMultConditionEnv with data loaded
+#'
+#' The dataset correspond to data loaded for the Arzal dam (Vilaine) in 2008, two quantitative
+#' parameters (temperature and tide coefficient and a qualitative parameter moon phase are loaded.
+#' @format An object of class \link{BilanConditionEnv-class} with data slot loaded:
+#' \describe{
+#' \item{bilanMigrationMult}{An object of class \link{BilanMigrationMult-class}}
+#' \item{bilanConditionEnv}{ An object of class \link{BilanConditionEnv-class}}#'
+#' }
+#' @keywords data
+"bmmCE"
Added: pkg/stacomir/data/bmmCE.rda
===================================================================
(Binary files differ)
Property changes on: pkg/stacomir/data/bmmCE.rda
___________________________________________________________________
Added: svn:mime-type
+ application/octet-stream
Modified: pkg/stacomir/inst/config/generate_Roxygen2.R
===================================================================
--- pkg/stacomir/inst/config/generate_Roxygen2.R 2017-05-16 14:51:03 UTC (rev 366)
+++ pkg/stacomir/inst/config/generate_Roxygen2.R 2017-05-16 19:11:13 UTC (rev 367)
@@ -37,8 +37,8 @@
require(roxygen2)
#Pour Cédric
-#roxygen2::roxygenise("F:/workspace/stacomir/pkg/stacomir");warnings()[1:10]
+roxygen2::roxygenise("F:/workspace/stacomir/pkg/stacomir");warnings()[1:10]
#Pour Marion
-roxygen2::roxygenise("C:/Users/logrami/workspace/stacomir/pkg/stacomir");warnings()[1:10]
+#roxygen2::roxygenise("C:/Users/logrami/workspace/stacomir/pkg/stacomir");warnings()[1:10]
Modified: pkg/stacomir/inst/config/generate_data.R
===================================================================
--- pkg/stacomir/inst/config/generate_data.R 2017-05-16 14:51:03 UTC (rev 366)
+++ pkg/stacomir/inst/config/generate_data.R 2017-05-16 19:11:13 UTC (rev 367)
@@ -525,4 +525,33 @@
bmC at dc@data[,"type_df"]<-iconv(bmC at dc@data[,"type_df"],from="latin1",to="UTF8")
bmC at dc@data[,"type_dc"]<-iconv(bmC at dc@data[,"type_dc"],from="latin1",to="UTF8")
bmC at dc@data[,"dif_localisation"]<-iconv(bmC at dc@data[,"dif_localisation"],from="latin1",to="UTF8")
-devtools::use_data(bmC,internal=FALSE,overwrite=TRUE)
\ No newline at end of file
+devtools::use_data(bmC,internal=FALSE,overwrite=TRUE)
+
+
+#################################
+# generates dataset for BilanMigrationMultConditionEnv
+##################################
+setwd("F:/workspace/stacomir/pkg/stacomir")
+require(stacomiR)
+stacomi(gr_interface=FALSE,
+ login_window=FALSE,
+ database_expected=FALSE)
+
+bmmCE<-new("BilanMigrationMultConditionEnv")
+bmmCE<-choice_c(bmmCE,
+ dc=c(5,6,12),
+ taxon=c("Anguilla anguilla"),
+ stade=c("AGJ","AGG","CIV"),
+ stationMesure=c("temp_gabion","coef_maree","phases_lune"),
+ datedebut="2008-01-01",
+ datefin="2008-12-31",
+ silent=FALSE)
+bmmCE<-charge(bmmCE)
+bmmCE<-connect(bmmCE)
+
+bmmCE at bilanMigrationMult@dc at data[,"ouv_libelle"]<-iconv(bmmCE at bilanMigrationMult@dc at data[,"ouv_libelle"],from="latin1",to="UTF8")
+bmmCE at bilanMigrationMult@dc at data[,"dis_commentaires"]<-iconv(bmmCE at bilanMigrationMult@dc at data[,"dis_commentaires"],from="latin1",to="UTF8")
+bmmCE at bilanMigrationMult@dc at data[,"type_df"]<-iconv(bmmCE at bilanMigrationMult@dc at data[,"type_df"],from="latin1",to="UTF8")
+bmmCE at bilanMigrationMult@dc at data[,"type_dc"]<-iconv(bmmCE at bilanMigrationMult@dc at data[,"type_dc"],from="latin1",to="UTF8")
+bmmCE at bilanMigrationMult@dc at data[,"dif_localisation"]<-iconv(bmmCE at bilanMigrationMult@dc at data[,"dif_localisation"],from="latin1",to="UTF8")
+devtools::use_data(bmmCE,internal=FALSE,overwrite=TRUE)
\ No newline at end of file
Modified: pkg/stacomir/inst/examples/bilanMigrationMultConditionEnv_example.R
===================================================================
--- pkg/stacomir/inst/examples/bilanMigrationMultConditionEnv_example.R 2017-05-16 14:51:03 UTC (rev 366)
+++ pkg/stacomir/inst/examples/bilanMigrationMultConditionEnv_example.R 2017-05-16 19:11:13 UTC (rev 367)
@@ -14,12 +14,11 @@
silent=FALSE)
bmmCE<-charge(bmmCE)
bmmCE<-connect(bmmCE)
- bmmCE<-calcule(bmmCE,silent=TRUE)
}
data("bmmCE")
-
+bmmCE<-calcule(bmmCE,silent=TRUE)
plot(bmmCE,
color_station=c("temp_gabion"="red","coef_maree"="blue","phases_lune"="pink"),
color_dc=c("5"="yellow","6"="orange","12"="purple")
Modified: pkg/stacomir/man/BilanMigrationMultConditionEnv-class.Rd
===================================================================
--- pkg/stacomir/man/BilanMigrationMultConditionEnv-class.Rd 2017-05-16 14:51:03 UTC (rev 366)
+++ pkg/stacomir/man/BilanMigrationMultConditionEnv-class.Rd 2017-05-16 19:11:13 UTC (rev 367)
@@ -35,12 +35,11 @@
silent=FALSE)
bmmCE<-charge(bmmCE)
bmmCE<-connect(bmmCE)
- bmmCE<-calcule(bmmCE,silent=TRUE)
}
data("bmmCE")
-
+bmmCE<-calcule(bmmCE,silent=TRUE)
plot(bmmCE,
color_station=c("temp_gabion"="red","coef_maree"="blue","phases_lune"="pink"),
color_dc=c("5"="yellow","6"="orange","12"="purple")
Added: pkg/stacomir/man/bmmCE.Rd
===================================================================
--- pkg/stacomir/man/bmmCE.Rd (rev 0)
+++ pkg/stacomir/man/bmmCE.Rd 2017-05-16 19:11:13 UTC (rev 367)
@@ -0,0 +1,20 @@
+% Generated by roxygen2: do not edit by hand
+% Please edit documentation in R/data.r
+\docType{data}
+\name{bmmCE}
+\alias{bmmCE}
+\title{An object of class BilanMigrationMultConditionEnv with data loaded}
+\format{An object of class \link{BilanConditionEnv-class} with data slot loaded:
+\describe{
+ \item{bilanMigrationMult}{An object of class \link{BilanMigrationMult-class}}
+ \item{bilanConditionEnv}{ An object of class \link{BilanConditionEnv-class}}#'
+ }}
+\usage{
+bmmCE
+}
+\description{
+The dataset correspond to data loaded for the Arzal dam (Vilaine) in 2008, two quantitative
+parameters (temperature and tide coefficient and a qualitative parameter moon phase are loaded.
+}
+\keyword{data}
+
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