[Stacomir-commits] r186 - pkg/stacomir/man
noreply at r-forge.r-project.org
noreply at r-forge.r-project.org
Thu Sep 1 20:46:27 CEST 2016
Author: briand
Date: 2016-09-01 20:46:27 +0200 (Thu, 01 Sep 2016)
New Revision: 186
Added:
pkg/stacomir/man/bM_Arzal.Rd
pkg/stacomir/man/calcule.Rd
pkg/stacomir/man/charge.Rd
pkg/stacomir/man/charge_avec_filtre.Rd
pkg/stacomir/man/charge_complement.Rd
pkg/stacomir/man/choice.Rd
pkg/stacomir/man/choice_c.Rd
pkg/stacomir/man/choicemult.Rd
pkg/stacomir/man/createmessage.Rd
pkg/stacomir/man/getvalue.Rd
pkg/stacomir/man/hBilan_carlot.Rd
pkg/stacomir/man/hbilanMigrationwrite.Rd
pkg/stacomir/man/out.Rd
pkg/stacomir/man/plot-BilanMigration-ANY-method.Rd
pkg/stacomir/man/plot.Rd
pkg/stacomir/man/supprime.Rd
Removed:
pkg/stacomir/man/hBilanLots.Rd
pkg/stacomir/man/hbilanMigrationgraph.Rd
Modified:
pkg/stacomir/man/BilanEspeces-class.Rd
pkg/stacomir/man/bMM_Arzal.Rd
pkg/stacomir/man/calcule-BilanMigration-method.Rd
pkg/stacomir/man/calcule-BilanMigrationMult-method.Rd
pkg/stacomir/man/charge-Bilan_carlot-method.Rd
pkg/stacomir/man/choice_c-BilanMigration-method.Rd
pkg/stacomir/man/connect-BilanMigration-method.Rd
pkg/stacomir/man/funBilanMigrationAnnuel.Rd
pkg/stacomir/man/funtable.Rd
pkg/stacomir/man/mygtkProgressBar.Rd
pkg/stacomir/man/plot-BilanMigrationMult-ANY-method.Rd
Log:
Modified: pkg/stacomir/man/BilanEspeces-class.Rd
===================================================================
--- pkg/stacomir/man/BilanEspeces-class.Rd 2016-08-29 19:41:57 UTC (rev 185)
+++ pkg/stacomir/man/BilanEspeces-class.Rd 2016-09-01 18:46:27 UTC (rev 186)
@@ -23,7 +23,7 @@
\item{\code{data}}{\code{data.frame}}
-\item{\code{liste}}{Object of class \code{\link{RefListe}} RefListe referential
+\item{\code{liste}}{Object of class \code{\link{RefListe-class}} RefListe referential
class choose within a list}
}}
\section{Objects from the Class}{
Modified: pkg/stacomir/man/bMM_Arzal.Rd
===================================================================
--- pkg/stacomir/man/bMM_Arzal.Rd 2016-08-29 19:41:57 UTC (rev 185)
+++ pkg/stacomir/man/bMM_Arzal.Rd 2016-09-01 18:46:27 UTC (rev 186)
@@ -30,16 +30,11 @@
}}
\usage{
bMM_Arzal
-
-bMM_Arzal
}
\description{
This data corresponds to the data collected from three fishways
and correspond to the migration station at Arzal in 2011 for all
stages of eel (Anguilla anguilla)
-
-This data corresponds to the data collected at the vertical slot fishway
-in 2015, video recording of the thin lipped mullet Liza ramada migration
}
\keyword{data}
Added: pkg/stacomir/man/bM_Arzal.Rd
===================================================================
--- pkg/stacomir/man/bM_Arzal.Rd (rev 0)
+++ pkg/stacomir/man/bM_Arzal.Rd 2016-09-01 18:46:27 UTC (rev 186)
@@ -0,0 +1,38 @@
+% Generated by roxygen2: do not edit by hand
+% Please edit documentation in R/data.r
+\docType{data}
+\name{bM_Arzal}
+\alias{bM_Arzal}
+\title{An object of class bilanMigration with data loaded}
+\format{An object of class bilanMigration with 8 slots:
+\describe{
+ \item{dc}{the \code{RefDC} object with 4 slots filled with data corresponding to the iav postgres schema}
+ \item{taxons}{the \code{RefTaxon} the taxa selected}
+ \item{stades}{the \code{RefStades} the stage selected}
+ \item{pasDeTemps}{the \code{PasDeTempsJournalier} calculated for all 2015}
+ \item{data}{ A dataframe with 10304 rows and 11 variables
+ \describe{
+ \item{ope_identifiant}{operation id}
+ \item{lot_identifiant}{sample id}
+ \item{lot_identifiant}{sample id}
+ \item{ope_dic_identifiant}{dc id}
+ \item{lot_tax_code}{species id}
+ \item{lot_std_code}{stage id}
+ \item{value}{the value}
+ \item{type_de_quantite}{either effectif (number) or poids (weights)}
+ \item{lot_dev_code}{destination of the fishes}
+ \item{lot_methode_obtention}{method of data collection, measured, calculated...}
+ }
+ }
+ \item{coef_conversion}{A data frame with 0 observations : no quantity are reported for video recording of mullets, only numbers}
+ \item{time.sequence}{A time sequence generated for the bilan, used internally}
+}}
+\usage{
+bM_Arzal
+}
+\description{
+This data corresponds to the data collected at the vertical slot fishway
+in 2015, video recording of the thin lipped mullet Liza ramada migration
+}
+\keyword{data}
+
Modified: pkg/stacomir/man/calcule-BilanMigration-method.Rd
===================================================================
--- pkg/stacomir/man/calcule-BilanMigration-method.Rd 2016-08-29 19:41:57 UTC (rev 185)
+++ pkg/stacomir/man/calcule-BilanMigration-method.Rd 2016-09-01 18:46:27 UTC (rev 186)
@@ -5,23 +5,25 @@
\alias{calcule,BilanMigration-method}
\title{calcule method for BilanMigration}
\usage{
-\S4method{calcule}{BilanMigration}(object)
+\S4method{calcule}{BilanMigration}(object, negative = FALSE, silent = FALSE)
}
\arguments{
-\item{object}{An object of class \code{\link{BilanMigrationMult-class}}}
+\item{object}{An object of class \code{\link{BilanMigration-class}}}
\item{negative}{a boolean indicating if a separate sum must be done for positive and negative values, if true, positive and negative counts return
different rows}
+
+\item{silent}{Boolean, if true, information messages are not displays, only warnings and errors}
}
\value{
-BilanMigrationMult with slots filled by user choice
+BilanMigration with slots filled by user choice
}
\description{
-does the calculation once data are filled
+does the calculation once data are filled,. It also performs conversion from weight to numbers
in with the connect method
}
\note{
-The class BilanMigrationMult does not handle escapement rates.
+The class BilanMigration does not handle escapement rates nor
'devenir' i.e. the destination of the fishes.
}
Modified: pkg/stacomir/man/calcule-BilanMigrationMult-method.Rd
===================================================================
--- pkg/stacomir/man/calcule-BilanMigrationMult-method.Rd 2016-08-29 19:41:57 UTC (rev 185)
+++ pkg/stacomir/man/calcule-BilanMigrationMult-method.Rd 2016-09-01 18:46:27 UTC (rev 186)
@@ -17,10 +17,10 @@
\item{silent}{Defautl FALSE, should messages be stopped}
}
\value{
-BilanMigrationMult with slots filled by user choice
+BilanMigrationMult with a list in calcdata, one for each triplet (dc/taxa/stage) with data
}
\description{
-does the calculation once data are filled
+does the calculation once data are filled. It also performs conversion from weight to numbers
in with the connect method
}
\note{
Added: pkg/stacomir/man/calcule.Rd
===================================================================
--- pkg/stacomir/man/calcule.Rd (rev 0)
+++ pkg/stacomir/man/calcule.Rd 2016-09-01 18:46:27 UTC (rev 186)
@@ -0,0 +1,20 @@
+% Generated by roxygen2: do not edit by hand
+% Please edit documentation in R/create_generic.r
+\name{calcule}
+\alias{calcule}
+\title{Generic method for calculations}
+\usage{
+calcule(object, ...)
+}
+\arguments{
+\item{object}{Object}
+
+\item{...}{Additional parms}
+}
+\description{
+Generic method for calculations
+}
+\author{
+cedric.briand
+}
+
Modified: pkg/stacomir/man/charge-Bilan_carlot-method.Rd
===================================================================
--- pkg/stacomir/man/charge-Bilan_carlot-method.Rd 2016-08-29 19:41:57 UTC (rev 185)
+++ pkg/stacomir/man/charge-Bilan_carlot-method.Rd 2016-09-01 18:46:27 UTC (rev 186)
@@ -8,12 +8,12 @@
\S4method{charge}{Bilan_carlot}(object, h)
}
\arguments{
-\item{object}{An object of class \code{\link{Bilan_carlot}}}
+\item{object}{An object of class \link{Bilan_carlot-class}}
\item{h}{a handler}
}
\value{
-Bilan_carlot with slots filled with user choice
+An object of class \link{Bilan_carlot-class} with slots filled with user choice
An object of the class
}
Added: pkg/stacomir/man/charge.Rd
===================================================================
--- pkg/stacomir/man/charge.Rd (rev 0)
+++ pkg/stacomir/man/charge.Rd 2016-09-01 18:46:27 UTC (rev 186)
@@ -0,0 +1,20 @@
+% Generated by roxygen2: do not edit by hand
+% Please edit documentation in R/create_generic.r
+\name{charge}
+\alias{charge}
+\title{Generic method to load referentials}
+\usage{
+charge(object, ...)
+}
+\arguments{
+\item{object}{Object}
+
+\item{...}{Additional parms}
+}
+\description{
+Generic method to load referentials
+}
+\author{
+cedric.briand
+}
+
Added: pkg/stacomir/man/charge_avec_filtre.Rd
===================================================================
--- pkg/stacomir/man/charge_avec_filtre.Rd (rev 0)
+++ pkg/stacomir/man/charge_avec_filtre.Rd 2016-09-01 18:46:27 UTC (rev 186)
@@ -0,0 +1,20 @@
+% Generated by roxygen2: do not edit by hand
+% Please edit documentation in R/create_generic.r
+\name{charge_avec_filtre}
+\alias{charge_avec_filtre}
+\title{Generic method to load referentials, with filters from the parent object in the database}
+\usage{
+charge_avec_filtre(object, ...)
+}
+\arguments{
+\item{object}{Object}
+
+\item{...}{Additional parms}
+}
+\description{
+Generic method to load referentials, with filters from the parent object in the database
+}
+\author{
+cedric.briand
+}
+
Added: pkg/stacomir/man/charge_complement.Rd
===================================================================
--- pkg/stacomir/man/charge_complement.Rd (rev 0)
+++ pkg/stacomir/man/charge_complement.Rd 2016-09-01 18:46:27 UTC (rev 186)
@@ -0,0 +1,20 @@
+% Generated by roxygen2: do not edit by hand
+% Please edit documentation in R/create_generic.r
+\name{charge_complement}
+\alias{charge_complement}
+\title{Generic method to load additional data}
+\usage{
+charge_complement(object, ...)
+}
+\arguments{
+\item{object}{Object}
+
+\item{...}{Additional parms}
+}
+\description{
+Generic method to load additional data
+}
+\author{
+cedric.briand
+}
+
Added: pkg/stacomir/man/choice.Rd
===================================================================
--- pkg/stacomir/man/choice.Rd (rev 0)
+++ pkg/stacomir/man/choice.Rd 2016-09-01 18:46:27 UTC (rev 186)
@@ -0,0 +1,20 @@
+% Generated by roxygen2: do not edit by hand
+% Please edit documentation in R/create_generic.r
+\name{choice}
+\alias{choice}
+\title{Generic method for choice (using the gwidget graphical interface)}
+\usage{
+choice(object, ...)
+}
+\arguments{
+\item{object}{Object}
+
+\item{...}{Additional parms}
+}
+\description{
+Generic method for choice (using the gwidget graphical interface)
+}
+\author{
+cedric.briand
+}
+
Modified: pkg/stacomir/man/choice_c-BilanMigration-method.Rd
===================================================================
--- pkg/stacomir/man/choice_c-BilanMigration-method.Rd 2016-08-29 19:41:57 UTC (rev 185)
+++ pkg/stacomir/man/choice_c-BilanMigration-method.Rd 2016-09-01 18:46:27 UTC (rev 186)
@@ -11,12 +11,12 @@
\arguments{
\item{object}{An object of class \link{BilanMigration-class}}
-\item{dc}{A numeric or integer, the code of the dc, coerced to integer,see \link{choice_c-RefDC-method}}
+\item{dc}{A numeric or integer, the code of the dc, coerced to integer,see \link{choice_c,RefDC-method}}
\item{taxons}{Either a species name in latin or the SANDRE code for species (ie 2038=Anguilla anguilla),
-these should match the ref.tr_taxon_tax referential table in the stacomi database, see \link{choice_c-RefTaxon-method}}
+these should match the ref.tr_taxon_tax referential table in the stacomi database, see \link{choice_c,RefTaxon-method}}
-\item{stades}{A stage code matching the ref.tr_stadedeveloppement_std table in the stacomi database see \link{choice_c-RefStades-method}}
+\item{stades}{A stage code matching the ref.tr_stadedeveloppement_std table in the stacomi database see \link{choice_c,RefStades-method}}
\item{datedebut}{The starting date as a character, formats like \code{\%Y-\%m-\%d} or \code{\%d-\%m-\%Y} can be used as input}
Added: pkg/stacomir/man/choice_c.Rd
===================================================================
--- pkg/stacomir/man/choice_c.Rd (rev 0)
+++ pkg/stacomir/man/choice_c.Rd 2016-09-01 18:46:27 UTC (rev 186)
@@ -0,0 +1,20 @@
+% Generated by roxygen2: do not edit by hand
+% Please edit documentation in R/create_generic.r
+\name{choice_c}
+\alias{choice_c}
+\title{Generic method for manual choice}
+\usage{
+choice_c(object, ...)
+}
+\arguments{
+\item{object}{Object}
+
+\item{...}{Additional parms}
+}
+\description{
+Generic method for manual choice
+}
+\author{
+cedric.briand
+}
+
Added: pkg/stacomir/man/choicemult.Rd
===================================================================
--- pkg/stacomir/man/choicemult.Rd (rev 0)
+++ pkg/stacomir/man/choicemult.Rd 2016-09-01 18:46:27 UTC (rev 186)
@@ -0,0 +1,20 @@
+% Generated by roxygen2: do not edit by hand
+% Please edit documentation in R/create_generic.r
+\name{choicemult}
+\alias{choicemult}
+\title{Generic method for multiple choice (using the gwidget graphical interface)}
+\usage{
+choicemult(object, ...)
+}
+\arguments{
+\item{object}{Object}
+
+\item{...}{Additional parms}
+}
+\description{
+Generic method for multiple choice (using the gwidget graphical interface)
+}
+\author{
+cedric.briand
+}
+
Modified: pkg/stacomir/man/connect-BilanMigration-method.Rd
===================================================================
--- pkg/stacomir/man/connect-BilanMigration-method.Rd 2016-08-29 19:41:57 UTC (rev 185)
+++ pkg/stacomir/man/connect-BilanMigration-method.Rd 2016-09-01 18:46:27 UTC (rev 186)
@@ -7,6 +7,9 @@
\usage{
\S4method{connect}{BilanMigration}(object, ...)
}
+\arguments{
+\item{object}{An object of class \link{BilanMigration-class}}
+}
\value{
BilanMigration with slot @data filled from the database
}
Added: pkg/stacomir/man/createmessage.Rd
===================================================================
--- pkg/stacomir/man/createmessage.Rd (rev 0)
+++ pkg/stacomir/man/createmessage.Rd 2016-09-01 18:46:27 UTC (rev 186)
@@ -0,0 +1,20 @@
+% Generated by roxygen2: do not edit by hand
+% Please edit documentation in R/create_generic.r
+\name{createmessage}
+\alias{createmessage}
+\title{Generic method to create messages}
+\usage{
+createmessage(object, ...)
+}
+\arguments{
+\item{object}{Object}
+
+\item{...}{Additional parms}
+}
+\description{
+Generic method to create messages
+}
+\author{
+cedric.briand
+}
+
Modified: pkg/stacomir/man/funBilanMigrationAnnuel.Rd
===================================================================
--- pkg/stacomir/man/funBilanMigrationAnnuel.Rd 2016-08-29 19:41:57 UTC (rev 185)
+++ pkg/stacomir/man/funBilanMigrationAnnuel.Rd 2016-09-01 18:46:27 UTC (rev 186)
@@ -10,6 +10,9 @@
\arguments{
\item{bilanMigration}{an object of class \code{\linkS4class{BilanMigration}}}
}
+\value{
+A dataframe with column effectif, comprising the sum of bilanMigration counts
+}
\description{
this functions performs the sum over the year attention this function does
not count subsamples.
Modified: pkg/stacomir/man/funtable.Rd
===================================================================
--- pkg/stacomir/man/funtable.Rd 2016-08-29 19:41:57 UTC (rev 185)
+++ pkg/stacomir/man/funtable.Rd 2016-09-01 18:46:27 UTC (rev 186)
@@ -4,7 +4,7 @@
\alias{funtable}
\title{function to print and save statistics in .csv and .html formats for BilanMigration and BilanMigrationMult class}
\usage{
-funtable(tableau, time.sequence, taxon, stade, DC, resum)
+funtable(tableau, time.sequence, taxon, stade, DC, resum, silent)
}
\arguments{
\item{tableau}{A table with the following columns : No.pas,debut_pas,fin_pas,
@@ -20,6 +20,8 @@
\item{DC}{The counting device}
\item{resum}{A summary table generated by funstat}
+
+\item{silent}{If TRUE, all messages turned off (except warnings and errors)}
}
\description{
function to print and save statistics in .csv and .html formats for BilanMigration and BilanMigrationMult class
Added: pkg/stacomir/man/getvalue.Rd
===================================================================
--- pkg/stacomir/man/getvalue.Rd (rev 0)
+++ pkg/stacomir/man/getvalue.Rd 2016-09-01 18:46:27 UTC (rev 186)
@@ -0,0 +1,20 @@
+% Generated by roxygen2: do not edit by hand
+% Please edit documentation in R/create_generic.r
+\name{getvalue}
+\alias{getvalue}
+\title{Generic method getvalue}
+\usage{
+getvalue(object, ...)
+}
+\arguments{
+\item{object}{Object}
+
+\item{...}{Additional parms}
+}
+\description{
+Generic method getvalue
+}
+\author{
+cedric.briand
+}
+
Deleted: pkg/stacomir/man/hBilanLots.Rd
===================================================================
--- pkg/stacomir/man/hBilanLots.Rd 2016-08-29 19:41:57 UTC (rev 185)
+++ pkg/stacomir/man/hBilanLots.Rd 2016-09-01 18:46:27 UTC (rev 186)
@@ -1,12 +0,0 @@
-% Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/stacomi.r
-\name{hBilanLots}
-\alias{hBilanLots}
-\title{handler function used by the main interface}
-\usage{
-hBilanLots(h, ...)
-}
-\description{
-handler function used by the main interface
-}
-
Added: pkg/stacomir/man/hBilan_carlot.Rd
===================================================================
--- pkg/stacomir/man/hBilan_carlot.Rd (rev 0)
+++ pkg/stacomir/man/hBilan_carlot.Rd 2016-09-01 18:46:27 UTC (rev 186)
@@ -0,0 +1,12 @@
+% Generated by roxygen2: do not edit by hand
+% Please edit documentation in R/stacomi.r
+\name{hBilan_carlot}
+\alias{hBilan_carlot}
+\title{handler function used by the main interface}
+\usage{
+hBilan_carlot(h, ...)
+}
+\description{
+handler function used by the main interface
+}
+
Deleted: pkg/stacomir/man/hbilanMigrationgraph.Rd
===================================================================
--- pkg/stacomir/man/hbilanMigrationgraph.Rd 2016-08-29 19:41:57 UTC (rev 185)
+++ pkg/stacomir/man/hbilanMigrationgraph.Rd 2016-09-01 18:46:27 UTC (rev 186)
@@ -1,25 +0,0 @@
-% Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/BilanMigration.r
-\name{hbilanMigrationgraph}
-\alias{hbilanMigrationgraph}
-\title{handler hBilanMigrationgraph
-calls the fungraph for BilanMigration and allows the saving of daily and monthly counts in the database}
-\usage{
-hbilanMigrationgraph(h, ...)
-}
-\arguments{
-\item{h}{a handler}
-
-\item{...}{Additional parameters}
-}
-\description{
-handler hBilanMigrationgraph
-calls the fungraph for BilanMigration and allows the saving of daily and monthly counts in the database
-}
-\note{
-pb if other than daily value, the time steps have been constrained to daily values for this plot
-}
-\author{
-Cedric Briand \email{cedric.briand"at"eptb-vilaine.fr}
-}
-
Added: pkg/stacomir/man/hbilanMigrationwrite.Rd
===================================================================
--- pkg/stacomir/man/hbilanMigrationwrite.Rd (rev 0)
+++ pkg/stacomir/man/hbilanMigrationwrite.Rd 2016-09-01 18:46:27 UTC (rev 186)
@@ -0,0 +1,22 @@
+% Generated by roxygen2: do not edit by hand
+% Please edit documentation in R/BilanMigration.r
+\name{hbilanMigrationwrite}
+\alias{hbilanMigrationwrite}
+\title{handler hBilanMigrationwrite
+Allows the saving of daily and monthly counts in the database, this method is also called from hbilanMigrationgraph}
+\usage{
+hbilanMigrationwrite(h, ...)
+}
+\arguments{
+\item{h}{a handler}
+
+\item{...}{Additional parameters}
+}
+\description{
+handler hBilanMigrationwrite
+Allows the saving of daily and monthly counts in the database, this method is also called from hbilanMigrationgraph
+}
+\author{
+Cedric Briand \email{cedric.briand"at"eptb-vilaine.fr}
+}
+
Modified: pkg/stacomir/man/mygtkProgressBar.Rd
===================================================================
--- pkg/stacomir/man/mygtkProgressBar.Rd 2016-08-29 19:41:57 UTC (rev 185)
+++ pkg/stacomir/man/mygtkProgressBar.Rd 2016-09-01 18:46:27 UTC (rev 186)
@@ -20,7 +20,7 @@
\item{pulse}{Do you want the widget to pulse}
}
\value{
-nothing but progress_bar and dialog gwidgets are assigned to .globalEnv
+nothing but progress_bar and dialog gwidgets are assigned to .GlobalEnv
}
\description{
Progress bar using a gtkdialog, the progress bar is assigned in .GlobalEnv
Added: pkg/stacomir/man/out.Rd
===================================================================
--- pkg/stacomir/man/out.Rd (rev 0)
+++ pkg/stacomir/man/out.Rd 2016-09-01 18:46:27 UTC (rev 186)
@@ -0,0 +1,20 @@
+% Generated by roxygen2: do not edit by hand
+% Please edit documentation in R/create_generic.r
+\name{out}
+\alias{out}
+\title{Generic method getvalue}
+\usage{
+out(object, ...)
+}
+\arguments{
+\item{object}{Object}
+
+\item{...}{Additional parms}
+}
+\description{
+Generic method getvalue
+}
+\author{
+cedric.briand
+}
+
Added: pkg/stacomir/man/plot-BilanMigration-ANY-method.Rd
===================================================================
--- pkg/stacomir/man/plot-BilanMigration-ANY-method.Rd (rev 0)
+++ pkg/stacomir/man/plot-BilanMigration-ANY-method.Rd 2016-09-01 18:46:27 UTC (rev 186)
@@ -0,0 +1,32 @@
+% Generated by roxygen2: do not edit by hand
+% Please edit documentation in R/BilanMigration.r
+\docType{methods}
+\name{plot,BilanMigration,ANY-method}
+\alias{plot,BilanMigration,ANY-method}
+\title{Plots of various type for BilanMigration}
+\usage{
+\S4method{plot}{BilanMigration,ANY}(x, y, plot.type = "standard",
+ silent = FALSE, ...)
+}
+\arguments{
+\item{x}{An object of class BilanMigrationMult}
+
+\item{y}{From the formals but missing}
+
+\item{plot.type}{One of "standard","step","multiple". Defaut to \code{standard} the standard BilanMigration with dc and operation displayed, can also be \code{step} or
+\code{multiple}}
+
+\item{...}{Additional arguments, see \code{plot}, \code{plot.default} and \code{par}}
+}
+\description{
+\itemize{
+ \item{plot.type="standard"}{calls \code{\link{fungraph}} and \code{\link{fungraph_civelle}} functions to plot as many "bilanmigration"
+ as needed, the function will test for the existence of data for one dc, one taxa, and one stage}
+ \item{plot.type="step"}{creates Cumulated graphs for BilanMigrationMult. Data are summed per day for different dc taxa and stages}
+ \item{plot.type="multiple"}{Method to overlay graphs for BilanMigrationMult (multiple dc/taxa/stage in the same plot)}
+}
+}
+\author{
+Cedric Briand \email{cedric.briand"at"eptb-vilaine.fr}
+}
+
Modified: pkg/stacomir/man/plot-BilanMigrationMult-ANY-method.Rd
===================================================================
--- pkg/stacomir/man/plot-BilanMigrationMult-ANY-method.Rd 2016-08-29 19:41:57 UTC (rev 185)
+++ pkg/stacomir/man/plot-BilanMigrationMult-ANY-method.Rd 2016-09-01 18:46:27 UTC (rev 186)
@@ -3,7 +3,7 @@
\docType{methods}
\name{plot,BilanMigrationMult,ANY-method}
\alias{plot,BilanMigrationMult,ANY-method}
-\title{Main plot method}
+\title{Plots of various type for BilanMigrationMult}
\usage{
\S4method{plot}{BilanMigrationMult,ANY}(x, y, plot.type = "standard",
silent = FALSE, ...)
Added: pkg/stacomir/man/plot.Rd
===================================================================
--- pkg/stacomir/man/plot.Rd (rev 0)
+++ pkg/stacomir/man/plot.Rd 2016-09-01 18:46:27 UTC (rev 186)
@@ -0,0 +1,20 @@
+% Generated by roxygen2: do not edit by hand
+% Please edit documentation in R/create_generic.r
+\name{plot}
+\alias{plot}
+\title{Generic method for plot}
+\usage{
+plot(x, y, ...)
+}
+\arguments{
+\item{...}{Additional parms}
+
+\item{object}{Object}
+}
+\description{
+Generic method for plot
+}
+\author{
+cedric.briand
+}
+
Added: pkg/stacomir/man/supprime.Rd
===================================================================
--- pkg/stacomir/man/supprime.Rd (rev 0)
+++ pkg/stacomir/man/supprime.Rd 2016-09-01 18:46:27 UTC (rev 186)
@@ -0,0 +1,20 @@
+% Generated by roxygen2: do not edit by hand
+% Please edit documentation in R/create_generic.r
+\name{supprime}
+\alias{supprime}
+\title{Generic method to delete entires from the database}
+\usage{
+supprime(object, ...)
+}
+\arguments{
+\item{object}{Object}
+
+\item{...}{Additional parms}
+}
+\description{
+Generic method to delete entires from the database
+}
+\author{
+cedric.briand
+}
+
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