[Stacomir-commits] r173 - in pkg/stacomir: . R man
noreply at r-forge.r-project.org
noreply at r-forge.r-project.org
Sat Aug 20 22:12:58 CEST 2016
Author: briand
Date: 2016-08-20 22:12:58 +0200 (Sat, 20 Aug 2016)
New Revision: 173
Modified:
pkg/stacomir/NAMESPACE
pkg/stacomir/R/BilanMigration.r
pkg/stacomir/R/Bilan_carlot.r
pkg/stacomir/R/Bilan_poids_moyen.r
pkg/stacomir/R/Bilan_stades_pigm.r
pkg/stacomir/R/RefCheckBox.r
pkg/stacomir/R/stacomi.r
pkg/stacomir/man/BilanConditionEnv-class.Rd
pkg/stacomir/man/BilanEspeces-class.Rd
pkg/stacomir/man/BilanFonctionnementDC-class.Rd
pkg/stacomir/man/BilanFonctionnementDF-class.Rd
pkg/stacomir/man/BilanMigration-class.Rd
pkg/stacomir/man/BilanMigrationConditionEnv-class.Rd
pkg/stacomir/man/BilanMigrationInterAnnuelle-class.Rd
pkg/stacomir/man/BilanMigrationPar-class.Rd
pkg/stacomir/man/Bilan_carlot-class.Rd
pkg/stacomir/man/Bilan_poids_moyen-class.Rd
pkg/stacomir/man/Bilan_stades_pigm-class.Rd
pkg/stacomir/man/PasDeTemps-class.Rd
pkg/stacomir/man/PasDeTempsJournalier-class.Rd
pkg/stacomir/man/RefAnnee-class.Rd
pkg/stacomir/man/RefCheckBox-class.Rd
pkg/stacomir/man/RefChoix-class.Rd
pkg/stacomir/man/RefCoe-class.Rd
pkg/stacomir/man/RefDC-class.Rd
pkg/stacomir/man/RefDF-class.Rd
pkg/stacomir/man/RefHorodate-class.Rd
pkg/stacomir/man/RefListe-class.Rd
pkg/stacomir/man/RefPoidsMoyenPeche-class.Rd
pkg/stacomir/man/RefStades-class.Rd
pkg/stacomir/man/RefStationMesure-class.Rd
pkg/stacomir/man/RefTaxon-class.Rd
pkg/stacomir/man/RefTextBox-class.Rd
pkg/stacomir/man/Refpar-class.Rd
pkg/stacomir/man/Refparqual-class.Rd
pkg/stacomir/man/Refparquan-class.Rd
pkg/stacomir/man/Refperiode-class.Rd
pkg/stacomir/man/charge-BilanEspeces-method.Rd
pkg/stacomir/man/charge-RefAnnee-method.Rd
pkg/stacomir/man/charge-RefCheckBox-method.Rd
pkg/stacomir/man/charge-RefChoix-method.Rd
pkg/stacomir/man/charge-RefCoe-method.Rd
pkg/stacomir/man/charge-RefListe-method.Rd
pkg/stacomir/man/charge-RefMsg-method.Rd
pkg/stacomir/man/charge-RefStades-method.Rd
pkg/stacomir/man/charge-RefStationMesure-method.Rd
pkg/stacomir/man/charge-RefTextBox-method.Rd
pkg/stacomir/man/charge-Refpar-method.Rd
pkg/stacomir/man/charge-Refparqual-method.Rd
pkg/stacomir/man/charge-Refparquan-method.Rd
pkg/stacomir/man/charge_avec_filtre-RefMsg-method.Rd
pkg/stacomir/man/charge_avec_filtre-RefStades-method.Rd
pkg/stacomir/man/charge_avec_filtre-Refpar-method.Rd
pkg/stacomir/man/charge_avec_filtre-Refparqual-method.Rd
pkg/stacomir/man/charge_avec_filtre-Refparquan-method.Rd
pkg/stacomir/man/charge_complement-Refparqual-method.Rd
pkg/stacomir/man/choice-RefAnnee-method.Rd
pkg/stacomir/man/choice-RefCheckBox-method.Rd
pkg/stacomir/man/choice-RefListe-method.Rd
pkg/stacomir/man/choice-RefStades-method.Rd
pkg/stacomir/man/choice-RefStationMesure-method.Rd
pkg/stacomir/man/choice-RefTextBox-method.Rd
pkg/stacomir/man/choice-Refpar-method.Rd
pkg/stacomir/man/choice-Refparqual-method.Rd
pkg/stacomir/man/choice_c-BilanMigrationMult-method.Rd
pkg/stacomir/man/choice_c-PasDeTempsJournalier-method.Rd
pkg/stacomir/man/choice_c-RefStades-method.Rd
pkg/stacomir/man/choice_c-RefTaxon-method.Rd
pkg/stacomir/man/choicemult-RefStades-method.Rd
pkg/stacomir/man/choicemult-RefTaxon-method.Rd
pkg/stacomir/man/fundist.Rd
pkg/stacomir/man/interface_BilanEspeces.Rd
Log:
Modifying examples to test Rcheck. gWidget examples set to \dontrun{
Modified: pkg/stacomir/NAMESPACE
===================================================================
--- pkg/stacomir/NAMESPACE 2016-08-20 17:08:38 UTC (rev 172)
+++ pkg/stacomir/NAMESPACE 2016-08-20 20:12:58 UTC (rev 173)
@@ -48,6 +48,7 @@
exportMethods(setRefHorodate)
exportMethods(summary)
import(RColorBrewer)
+import(RODBC)
import(RPostgreSQL)
import(gWidgets)
import(gWidgetsRGtk2)
Modified: pkg/stacomir/R/BilanMigration.r
===================================================================
--- pkg/stacomir/R/BilanMigration.r 2016-08-20 17:08:38 UTC (rev 172)
+++ pkg/stacomir/R/BilanMigration.r 2016-08-20 20:12:58 UTC (rev 173)
@@ -48,7 +48,6 @@
#' \code{\linkS4class{BilanMigrationInterAnnuelle}}
#' \code{\linkS4class{BilanMigrationPar}}
#' @concept Bilan Object
-#' @examples
#' @export
setClass(Class="BilanMigration",
representation=
Modified: pkg/stacomir/R/Bilan_carlot.r
===================================================================
--- pkg/stacomir/R/Bilan_carlot.r 2016-08-20 17:08:38 UTC (rev 172)
+++ pkg/stacomir/R/Bilan_carlot.r 2016-08-20 20:12:58 UTC (rev 173)
@@ -22,7 +22,7 @@
#' \code{\linkS4class{BilanMigrationPar}}
#' @concept Bilan Object
#' @examples
-#' \donrun{
+#' \dontrun{
#' showClass("Bilan_carlot")
#' object=new("Bilan_carlot")
#' }
Modified: pkg/stacomir/R/Bilan_poids_moyen.r
===================================================================
--- pkg/stacomir/R/Bilan_poids_moyen.r 2016-08-20 17:08:38 UTC (rev 172)
+++ pkg/stacomir/R/Bilan_poids_moyen.r 2016-08-20 20:12:58 UTC (rev 173)
@@ -49,7 +49,7 @@
#' \code{\linkS4class{BilanMigrationPar}}
#' @concept Bilan Object
#' @examples
-#' \donrun{
+#' \dontrun{
#' showClass("Bilan_poids_moyen")
#' object=new("Bilan_poids_moyen")
#' }
Modified: pkg/stacomir/R/Bilan_stades_pigm.r
===================================================================
--- pkg/stacomir/R/Bilan_stades_pigm.r 2016-08-20 17:08:38 UTC (rev 172)
+++ pkg/stacomir/R/Bilan_stades_pigm.r 2016-08-20 20:12:58 UTC (rev 173)
@@ -404,7 +404,7 @@
#' regular scale (phicum)
#' @seealso \code{\linkS4class{Bilan_stades_pigm}}
#' @examples
-#' \donrun{
+#' \dontrun{
#' Vparm<-list()
#' # below param for briand et al.,2005 pigmentation function in glass eel
#' Vparm$pigment_stage$p1<-0.267 # parameters for gamma functions describing changes from stage to stage
Modified: pkg/stacomir/R/RefCheckBox.r
===================================================================
--- pkg/stacomir/R/RefCheckBox.r 2016-08-20 17:08:38 UTC (rev 172)
+++ pkg/stacomir/R/RefCheckBox.r 2016-08-20 20:12:58 UTC (rev 173)
@@ -52,7 +52,7 @@
#' group=ggroup(container=win,horizontal=FALSE)
#' choice(object)
#' dispose(win)
-#' '}
+#' }
setMethod("choice",signature=signature("RefCheckBox"),definition=function(object) {
hlist=function(h,...){
i=h$action
Modified: pkg/stacomir/R/stacomi.r
===================================================================
--- pkg/stacomir/R/stacomi.r 2016-08-20 17:08:38 UTC (rev 172)
+++ pkg/stacomir/R/stacomi.r 2016-08-20 20:12:58 UTC (rev 173)
@@ -196,6 +196,7 @@
#' @import sqldf
#' @import methods
#' @import stacomirtools
+#' @import RODBC
#' @importFrom intervals Intervals
#' @importFrom intervals closed<-
#' @importFrom intervals interval_overlap
Modified: pkg/stacomir/man/BilanConditionEnv-class.Rd
===================================================================
--- pkg/stacomir/man/BilanConditionEnv-class.Rd 2016-08-20 17:08:38 UTC (rev 172)
+++ pkg/stacomir/man/BilanConditionEnv-class.Rd 2016-08-20 20:12:58 UTC (rev 173)
@@ -15,11 +15,6 @@
stationMesure=new("RefStationMesure"), data=data.frame(),
requete=new("RequeteODBCwheredate"))}.
}
-\examples{
-
-showClass("BilanConditionEnv")
-
-}
\author{
cedric.briand"at"eptb-vilaine.fr
}
Modified: pkg/stacomir/man/BilanEspeces-class.Rd
===================================================================
--- pkg/stacomir/man/BilanEspeces-class.Rd 2016-08-20 17:08:38 UTC (rev 172)
+++ pkg/stacomir/man/BilanEspeces-class.Rd 2016-08-20 20:12:58 UTC (rev 173)
@@ -14,11 +14,6 @@
Objects can be created by calls of the form
\code{new("BilanEspeces", ...)}.
}
-\examples{
-
-showClass("BilanEspeces")
-
-}
\author{
Cedric Briand \email{cedric.briand"at"eptb-vilaine.fr}
}
Modified: pkg/stacomir/man/BilanFonctionnementDC-class.Rd
===================================================================
--- pkg/stacomir/man/BilanFonctionnementDC-class.Rd 2016-08-20 17:08:38 UTC (rev 172)
+++ pkg/stacomir/man/BilanFonctionnementDC-class.Rd 2016-08-20 20:12:58 UTC (rev 173)
@@ -14,11 +14,6 @@
Objects can be created by calls of the form
\code{new("BilanFonctionnementDC", ...)}.
}
-\examples{
-
-showClass("BilanFonctionnementDC")
-
-}
\author{
Cedric Briand \email{cedric.briand"at"eptb-vilaine.fr}
}
Modified: pkg/stacomir/man/BilanFonctionnementDF-class.Rd
===================================================================
--- pkg/stacomir/man/BilanFonctionnementDF-class.Rd 2016-08-20 17:08:38 UTC (rev 172)
+++ pkg/stacomir/man/BilanFonctionnementDF-class.Rd 2016-08-20 20:12:58 UTC (rev 173)
@@ -12,11 +12,6 @@
Objects can be created by calls of the form
\code{new("BilanFonctionnementDF")}.
}
-\examples{
-
-showClass("BilanFonctionnementDF")
-
-}
\author{
Cedric Briand \email{cedric.briand"at"eptb-vilaine.fr}
}
Modified: pkg/stacomir/man/BilanMigration-class.Rd
===================================================================
--- pkg/stacomir/man/BilanMigration-class.Rd 2016-08-20 17:08:38 UTC (rev 172)
+++ pkg/stacomir/man/BilanMigration-class.Rd 2016-08-20 20:12:58 UTC (rev 173)
@@ -36,12 +36,6 @@
\item{:}{Object of class \code{"POSIXct"} : duration of the
analysis} }
}
-\examples{
-
-showClass("BilanMigration")
-bilanMigration= new("BilanMigration")
-
-}
\author{
Cedric Briand \email{cedric.briand"at"eptb-vilaine.fr}
}
Modified: pkg/stacomir/man/BilanMigrationConditionEnv-class.Rd
===================================================================
--- pkg/stacomir/man/BilanMigrationConditionEnv-class.Rd 2016-08-20 17:08:38 UTC (rev 172)
+++ pkg/stacomir/man/BilanMigrationConditionEnv-class.Rd 2016-08-20 20:12:58 UTC (rev 173)
@@ -19,11 +19,6 @@
\code{"BilanConditionEnv"} The environmental overview}\item{:}{Object of
class \code{"BilanConditionEnv"} The environmental overview} }
}
-\examples{
-
-showClass("BilanMigrationConditionEnv")
-
-}
\author{
Cedric Briand \email{cedric.briand"at"eptb-vilaine.fr}
}
Modified: pkg/stacomir/man/BilanMigrationInterAnnuelle-class.Rd
===================================================================
--- pkg/stacomir/man/BilanMigrationInterAnnuelle-class.Rd 2016-08-20 17:08:38 UTC (rev 172)
+++ pkg/stacomir/man/BilanMigrationInterAnnuelle-class.Rd 2016-08-20 20:12:58 UTC (rev 173)
@@ -20,11 +20,6 @@
\code{"BilanConditionEnv"} The environmental overview}\item{:}{Object of
class \code{"BilanConditionEnv"} The environmental overview} }
}
-\examples{
-
-showClass("BilanMigrationConditionEnv")
-
-}
\author{
Cedric Briand \email{cedric.briand"at"eptb-vilaine.fr}
}
Modified: pkg/stacomir/man/BilanMigrationPar-class.Rd
===================================================================
--- pkg/stacomir/man/BilanMigrationPar-class.Rd 2016-08-20 17:08:38 UTC (rev 172)
+++ pkg/stacomir/man/BilanMigrationPar-class.Rd 2016-08-20 20:12:58 UTC (rev 173)
@@ -47,11 +47,6 @@
\code{new("BilanMigrationPar", ...)}. they are loaded by the interface
using interface_BilanMigrationPar function.
}
-\examples{
-
-showClass("BilanMigrationPar")
-
-}
\author{
Cedric Briand \email{cedric.briand"at"eptb-vilaine.fr}
Modified: pkg/stacomir/man/Bilan_carlot-class.Rd
===================================================================
--- pkg/stacomir/man/Bilan_carlot-class.Rd 2016-08-20 17:08:38 UTC (rev 172)
+++ pkg/stacomir/man/Bilan_carlot-class.Rd 2016-08-20 20:12:58 UTC (rev 173)
@@ -17,11 +17,11 @@
\code{new("Bilan_carlot", ...)}
}
\examples{
-
+\dontrun{
showClass("Bilan_carlot")
object=new("Bilan_carlot")
-
}
+}
\author{
Cedric Briand \email{cedric.briand"at"eptb-vilaine.fr}
}
Modified: pkg/stacomir/man/Bilan_poids_moyen-class.Rd
===================================================================
--- pkg/stacomir/man/Bilan_poids_moyen-class.Rd 2016-08-20 17:08:38 UTC (rev 172)
+++ pkg/stacomir/man/Bilan_poids_moyen-class.Rd 2016-08-20 20:12:58 UTC (rev 173)
@@ -36,11 +36,11 @@
choose within a list, here do you want subsamples or not } }
}
\examples{
-
+ \dontrun{
showClass("Bilan_poids_moyen")
object=new("Bilan_poids_moyen")
-
}
+}
\author{
Cedric Briand \email{cedric.briand"at"eptb-vilaine.fr}
}
Modified: pkg/stacomir/man/Bilan_stades_pigm-class.Rd
===================================================================
--- pkg/stacomir/man/Bilan_stades_pigm-class.Rd 2016-08-20 17:08:38 UTC (rev 172)
+++ pkg/stacomir/man/Bilan_stades_pigm-class.Rd 2016-08-20 20:12:58 UTC (rev 173)
@@ -24,8 +24,7 @@
\code{new("Bilan_stades_pigm", ...)}.
}
\examples{
-
-showClass("Bilan_stades_pigm")
+#' showClass("Bilan_stades_pigm")
}
\author{
Cedric Briand \email{cedric.briand"at"eptb-vilaine.fr}
@@ -37,7 +36,6 @@
995-1009.
\url{http://www3.interscience.wiley.com/journal/118686679/abstract}
\url{http://www.eptb-vilaine.fr/site/index.php/publications-scientifiques/46-publications-migrateurs/60-dynamique-de-population-et-de-migration-des-civelles-en-estuaire-de-vilaine.}
-\url{http://w3.eptb-vilaine.fr:8080/tracstacomi}
}
\seealso{
Other Bilan Classes \code{\linkS4class{Bilan_lot}}
Modified: pkg/stacomir/man/PasDeTemps-class.Rd
===================================================================
--- pkg/stacomir/man/PasDeTemps-class.Rd 2016-08-20 17:08:38 UTC (rev 172)
+++ pkg/stacomir/man/PasDeTemps-class.Rd 2016-08-20 20:12:58 UTC (rev 173)
@@ -23,11 +23,6 @@
current step }\item{:}{Object of class \code{"integer"} Number of the
current step } }
}
-\examples{
-
-showClass("PasDeTemps")
-
-}
\author{
cedric.briand"at"eptb-vilaine.fr
}
Modified: pkg/stacomir/man/PasDeTempsJournalier-class.Rd
===================================================================
--- pkg/stacomir/man/PasDeTempsJournalier-class.Rd 2016-08-20 17:08:38 UTC (rev 172)
+++ pkg/stacomir/man/PasDeTempsJournalier-class.Rd 2016-08-20 20:12:58 UTC (rev 173)
@@ -25,11 +25,6 @@
current step }\item{:}{Object of class \code{"integer"} Number of the
current step } }
}
-\examples{
-
-showClass("PasDeTempsJournalier")
-
-}
\author{
cedric.briand"at"eptb-vilaine.fr
}
Modified: pkg/stacomir/man/RefAnnee-class.Rd
===================================================================
--- pkg/stacomir/man/RefAnnee-class.Rd 2016-08-20 17:08:38 UTC (rev 172)
+++ pkg/stacomir/man/RefAnnee-class.Rd 2016-08-20 20:12:58 UTC (rev 173)
@@ -18,11 +18,6 @@
Objects can be created by calls of the form
\code{new("RefAnnee", data=data.frame(), annee_selectionnee=numeric())}.
}
-\examples{
-
-showClass("RefAnnee")
-
-}
\author{
cedric.briand"at"eptb-vilaine.fr
}
Modified: pkg/stacomir/man/RefCheckBox-class.Rd
===================================================================
--- pkg/stacomir/man/RefCheckBox-class.Rd 2016-08-20 17:08:38 UTC (rev 172)
+++ pkg/stacomir/man/RefCheckBox-class.Rd 2016-08-20 20:12:58 UTC (rev 173)
@@ -20,10 +20,6 @@
Objects can be created by calls of the form
\code{new("RefCheckBox", ...)}.
}
-\examples{
-
-showClass("RefCheckBox")
-}
\author{
Cedric Briand \email{cedric.briand"at"eptb-vilaine.fr}
Modified: pkg/stacomir/man/RefChoix-class.Rd
===================================================================
--- pkg/stacomir/man/RefChoix-class.Rd 2016-08-20 17:08:38 UTC (rev 172)
+++ pkg/stacomir/man/RefChoix-class.Rd 2016-08-20 20:12:58 UTC (rev 173)
@@ -22,11 +22,6 @@
\code{new("RefChoix", listechoice=character() ,label=character()
,selected=integer())}.
}
-\examples{
-
-showClass("RefChoix")
-
-}
\author{
cedric.briand"at"eptb-vilaine.fr
}
Modified: pkg/stacomir/man/RefCoe-class.Rd
===================================================================
--- pkg/stacomir/man/RefCoe-class.Rd 2016-08-20 17:08:38 UTC (rev 172)
+++ pkg/stacomir/man/RefCoe-class.Rd 2016-08-20 20:12:58 UTC (rev 173)
@@ -26,11 +26,6 @@
Objects can be created by calls of the form
\code{new("RefCoe")}.
}
-\examples{
-
-showClass("RefCoe")
-
-}
\author{
cedric.briand"at"eptb-vilaine.fr
}
Modified: pkg/stacomir/man/RefDC-class.Rd
===================================================================
--- pkg/stacomir/man/RefDC-class.Rd 2016-08-20 17:08:38 UTC (rev 172)
+++ pkg/stacomir/man/RefDC-class.Rd 2016-08-20 20:12:58 UTC (rev 173)
@@ -24,11 +24,6 @@
\code{new("RefDC", dc_selectionne=integer(), ouvrage=integer(),
data=data.frame())}.
}
-\examples{
-
-showClass("RefDC")
-
-}
\author{
cedric.briand"at"eptb-vilaine.fr
}
Modified: pkg/stacomir/man/RefDF-class.Rd
===================================================================
--- pkg/stacomir/man/RefDF-class.Rd 2016-08-20 17:08:38 UTC (rev 172)
+++ pkg/stacomir/man/RefDF-class.Rd 2016-08-20 20:12:58 UTC (rev 173)
@@ -20,11 +20,6 @@
\item{\code{data}}{Object of class \code{"data.frame"} Data concerning the fishway}
}}
-\examples{
-
-showClass("RefDF")
-
-}
\author{
cedric.briand"at"eptb-vilaine.fr
}
Modified: pkg/stacomir/man/RefHorodate-class.Rd
===================================================================
--- pkg/stacomir/man/RefHorodate-class.Rd 2016-08-20 17:08:38 UTC (rev 172)
+++ pkg/stacomir/man/RefHorodate-class.Rd 2016-08-20 20:12:58 UTC (rev 173)
@@ -16,10 +16,6 @@
Objects can be created by calls of the form
\code{new("RefHorodate", \dots{})}.
}
-\examples{
-showClass("RefHorodate")
-
-}
\author{
Cedric Briand \email{cedric.briand"at"eptb-vilaine.fr}
}
Modified: pkg/stacomir/man/RefListe-class.Rd
===================================================================
--- pkg/stacomir/man/RefListe-class.Rd 2016-08-20 17:08:38 UTC (rev 172)
+++ pkg/stacomir/man/RefListe-class.Rd 2016-08-20 20:12:58 UTC (rev 173)
@@ -21,11 +21,6 @@
of class \code{"character"}} \item{list("label")}{Object of class
\code{"character"}}\item{:}{Object of class \code{"character"}} }
}
-\examples{
-
-showClass("RefListe")
-
-}
\author{
cedric.briand"at"eptb-vilaine.fr
}
Modified: pkg/stacomir/man/RefPoidsMoyenPeche-class.Rd
===================================================================
--- pkg/stacomir/man/RefPoidsMoyenPeche-class.Rd 2016-08-20 17:08:38 UTC (rev 172)
+++ pkg/stacomir/man/RefPoidsMoyenPeche-class.Rd 2016-08-20 20:12:58 UTC (rev 173)
@@ -18,11 +18,6 @@
\item{list("datefin")}{Object of class \code{"POSIXlt"} ~ Ending
year}\item{:}{Object of class \code{"POSIXlt"} ~ Ending year} }
}
-\examples{
-
-showClass("RefPoidsMoyenPeche")
-
-}
\author{
cedric.briand"at"eptb-vilaine.fr
}
Modified: pkg/stacomir/man/RefStades-class.Rd
===================================================================
--- pkg/stacomir/man/RefStades-class.Rd 2016-08-20 17:08:38 UTC (rev 172)
+++ pkg/stacomir/man/RefStades-class.Rd 2016-08-20 20:12:58 UTC (rev 173)
@@ -14,11 +14,6 @@
available in the database}\item{:}{Object of class \code{"data.frame"} ~ The
phases available in the database} }
}
-\examples{
-
-showClass("RefStades")
-
-}
\author{
cedric.briand"at"eptb-vilaine.fr
}
Modified: pkg/stacomir/man/RefStationMesure-class.Rd
===================================================================
--- pkg/stacomir/man/RefStationMesure-class.Rd 2016-08-20 17:08:38 UTC (rev 172)
+++ pkg/stacomir/man/RefStationMesure-class.Rd 2016-08-20 20:12:58 UTC (rev 173)
@@ -17,10 +17,6 @@
Objects can be created by calls of the form
\code{new("RefStationMesure", ...)}.
}
-\examples{
-
-showClass("RefStationMesure")
-}
\author{
cedric.briand"at"eptb-vilaine.fr
}
Modified: pkg/stacomir/man/RefTaxon-class.Rd
===================================================================
--- pkg/stacomir/man/RefTaxon-class.Rd 2016-08-20 17:08:38 UTC (rev 172)
+++ pkg/stacomir/man/RefTaxon-class.Rd 2016-08-20 20:12:58 UTC (rev 173)
@@ -17,10 +17,6 @@
Objects can be created by calls of the form
\code{new("RefTaxon", ...)}.
}
-\examples{
-
-showClass("RefTaxon")
-}
\author{
cedric.briand"at"eptb-vilaine.fr
}
@@ -41,5 +37,4 @@
\code{\linkS4class{RefStationMesure}}
\code{\linkS4class{RefTaxon}}
}
-\keyword{classes}
Modified: pkg/stacomir/man/RefTextBox-class.Rd
===================================================================
--- pkg/stacomir/man/RefTextBox-class.Rd 2016-08-20 17:08:38 UTC (rev 172)
+++ pkg/stacomir/man/RefTextBox-class.Rd 2016-08-20 20:12:58 UTC (rev 173)
@@ -16,9 +16,6 @@
\item{\code{checked}}{a vector}
}}
-\examples{
-object=new("RefTextBox")
-}
\author{
cedric.briand"at"eptb-vilaine.fr
}
Modified: pkg/stacomir/man/Refpar-class.Rd
===================================================================
--- pkg/stacomir/man/Refpar-class.Rd 2016-08-20 17:08:38 UTC (rev 172)
+++ pkg/stacomir/man/Refpar-class.Rd 2016-08-20 20:12:58 UTC (rev 173)
@@ -19,11 +19,6 @@
database}\item{:}{Object of class \code{"data.frame"} ~ All the parameters
stored in the database} }
}
-\examples{
-
-showClass("Refpar")
-
-}
\author{
cedric.briand"at"eptb-vilaine.fr
}
Modified: pkg/stacomir/man/Refparqual-class.Rd
===================================================================
--- pkg/stacomir/man/Refparqual-class.Rd 2016-08-20 17:08:38 UTC (rev 172)
+++ pkg/stacomir/man/Refparqual-class.Rd 2016-08-20 20:12:58 UTC (rev 173)
@@ -22,10 +22,6 @@
parameters }\item{:}{Object of class \code{"data.frame"} Qualitatives
parameters } }
}
-\examples{
-
-showClass("Refparqual")
-}
\author{
cedric.briand"at"eptb-vilaine.fr
}
Modified: pkg/stacomir/man/Refparquan-class.Rd
===================================================================
--- pkg/stacomir/man/Refparquan-class.Rd 2016-08-20 17:08:38 UTC (rev 172)
+++ pkg/stacomir/man/Refparquan-class.Rd 2016-08-20 20:12:58 UTC (rev 173)
@@ -15,11 +15,6 @@
parameters }\item{:}{Object of class \code{"data.frame"} ~ Quantitative
parameters } }
}
-\examples{
-
-showClass("Refparquan")
-
-}
\author{
cedric.briand"at"eptb-vilaine.fr
}
Modified: pkg/stacomir/man/Refperiode-class.Rd
===================================================================
--- pkg/stacomir/man/Refperiode-class.Rd 2016-08-20 17:08:38 UTC (rev 172)
+++ pkg/stacomir/man/Refperiode-class.Rd 2016-08-20 20:12:58 UTC (rev 173)
@@ -19,11 +19,6 @@
Objects can be created by calls of the form
\code{new("Refperiode", ...)}.
}
-\examples{
-
-showClass("Refperiode")
-new("Refperiode")
-}
\seealso{
Other Referential.objects: \code{\link{RefAnnee-class}},
\code{\link{RefCheckBox-class}},
Modified: pkg/stacomir/man/charge-BilanEspeces-method.Rd
===================================================================
--- pkg/stacomir/man/charge-BilanEspeces-method.Rd 2016-08-20 17:08:38 UTC (rev 172)
+++ pkg/stacomir/man/charge-BilanEspeces-method.Rd 2016-08-20 20:12:58 UTC (rev 173)
@@ -15,9 +15,6 @@
charge method for BilanEspeces
verifies the content of objects and calls the connect method
}
-\examples{
-bilanEspeces=new("BilanEspeces")
-}
\author{
Cedric Briand \email{cedric.briand"at"eptb-vilaine.fr}
}
Modified: pkg/stacomir/man/charge-RefAnnee-method.Rd
===================================================================
--- pkg/stacomir/man/charge-RefAnnee-method.Rd 2016-08-20 17:08:38 UTC (rev 172)
+++ pkg/stacomir/man/charge-RefAnnee-method.Rd 2016-08-20 20:12:58 UTC (rev 173)
@@ -17,11 +17,14 @@
Selects year avalaible in the t_operation_ope table
}
\examples{
- object=new("RefAnnee")
+
+\dontrun{
+object=new("RefAnnee")
charge(object)
validObject( annee)
showMethods("charge")
}
+}
\author{
Cedric Briand \email{cedric.briand"at"eptb-vilaine.fr}
}
Modified: pkg/stacomir/man/charge-RefCheckBox-method.Rd
===================================================================
--- pkg/stacomir/man/charge-RefCheckBox-method.Rd 2016-08-20 17:08:38 UTC (rev 172)
+++ pkg/stacomir/man/charge-RefCheckBox-method.Rd 2016-08-20 20:12:58 UTC (rev 173)
@@ -14,9 +14,11 @@
Loading method for ReCheckBox referential objects
}
\examples{
+\dontrun{
object=new("RefCheckBox")
charge(object,title="essai",labels=c("par1","par2","par3"),checked=c(TRUE,TRUE,TRUE))
}
+}
\author{
Cedric Briand \email{cedric.briand"at"eptb-vilaine.fr}
}
Modified: pkg/stacomir/man/charge-RefChoix-method.Rd
===================================================================
--- pkg/stacomir/man/charge-RefChoix-method.Rd 2016-08-20 17:08:38 UTC (rev 172)
+++ pkg/stacomir/man/charge-RefChoix-method.Rd 2016-08-20 20:12:58 UTC (rev 173)
@@ -20,11 +20,14 @@
\description{
Loading method for Rechoice referential objects
}
+\examples{
+\dontrun{
+object=new("RefChoix")
+charge(object,vecteur=c("oui","non"),label="essai",selected=as.integer(1))
+}
+}
\author{
Cedric Briand \email{cedric.briand"at"eptb-vilaine.fr}
-#' @examples
- object=new("RefChoix")
-charge(object,vecteur=c("oui","non"),label="essai",selected=as.integer(1))
}
\seealso{
Other Referential.objects: \code{\link{RefAnnee-class}},
Modified: pkg/stacomir/man/charge-RefCoe-method.Rd
===================================================================
--- pkg/stacomir/man/charge-RefCoe-method.Rd 2016-08-20 17:08:38 UTC (rev 172)
+++ pkg/stacomir/man/charge-RefCoe-method.Rd 2016-08-20 20:12:58 UTC (rev 173)
@@ -14,11 +14,13 @@
The slots datedebut and datefin have to be filled before using charge
}
\examples{
+\dontrun{
object<- new("RefCoe")
object at datedebut<-strptime("01/01/1996",format="\%d/\%m/\%Y")
object at datefin<-strptime("01/01/1997",format="\%d/\%m/\%Y")
charge(object)
}
+}
\author{
Cedric Briand \email{cedric.briand"at"eptb-vilaine.fr}
}
Modified: pkg/stacomir/man/charge-RefListe-method.Rd
===================================================================
--- pkg/stacomir/man/charge-RefListe-method.Rd 2016-08-20 17:08:38 UTC (rev 172)
+++ pkg/stacomir/man/charge-RefListe-method.Rd 2016-08-20 20:12:58 UTC (rev 173)
@@ -14,9 +14,11 @@
Loading method for Refliste referential objects
}
\examples{
+\dontrun{
object=new("RefListe")
charge(object)
}
+}
\author{
Cedric Briand \email{cedric.briand"at"eptb-vilaine.fr}
}
Modified: pkg/stacomir/man/charge-RefMsg-method.Rd
===================================================================
--- pkg/stacomir/man/charge-RefMsg-method.Rd 2016-08-20 17:08:38 UTC (rev 172)
+++ pkg/stacomir/man/charge-RefMsg-method.Rd 2016-08-20 20:12:58 UTC (rev 173)
@@ -14,9 +14,11 @@
loads the common table ts_messager_msr
}
\examples{
+\dontrun{
object=new("RefMsg")
charge(object)
}
+}
\author{
Cedric Briand \email{cedric.briand"at"eptb-vilaine.fr}
}
Modified: pkg/stacomir/man/charge-RefStades-method.Rd
===================================================================
--- pkg/stacomir/man/charge-RefStades-method.Rd 2016-08-20 17:08:38 UTC (rev 172)
+++ pkg/stacomir/man/charge-RefStades-method.Rd 2016-08-20 20:12:58 UTC (rev 173)
@@ -14,9 +14,11 @@
Loading method for RefStades referential objects
}
\examples{
+\dontrun{
object=new("RefStades")
charge(object)
}
+}
\author{
Cedric Briand \email{cedric.briand"at"eptb-vilaine.fr}
}
Modified: pkg/stacomir/man/charge-RefStationMesure-method.Rd
===================================================================
--- pkg/stacomir/man/charge-RefStationMesure-method.Rd 2016-08-20 17:08:38 UTC (rev 172)
+++ pkg/stacomir/man/charge-RefStationMesure-method.Rd 2016-08-20 20:12:58 UTC (rev 173)
@@ -14,9 +14,11 @@
Loading method for RefStationMesure referential object
}
\examples{
+\dontrun{
object=new("RefStationMesure")
charge(object)
}
+}
\author{
Cedric Briand \email{cedric.briand"at"eptb-vilaine.fr}
}
Modified: pkg/stacomir/man/charge-RefTextBox-method.Rd
===================================================================
--- pkg/stacomir/man/charge-RefTextBox-method.Rd 2016-08-20 17:08:38 UTC (rev 172)
+++ pkg/stacomir/man/charge-RefTextBox-method.Rd 2016-08-20 20:12:58 UTC (rev 173)
@@ -14,9 +14,11 @@
Loading method for ReTextBox referential objects
}
\examples{
+\dontrun{
object=new("RefTextBox")
charge(object,title="un titre",label="20")
}
+}
\author{
Cedric Briand \email{cedric.briand"at"eptb-vilaine.fr}
}
Modified: pkg/stacomir/man/charge-Refpar-method.Rd
===================================================================
--- pkg/stacomir/man/charge-Refpar-method.Rd 2016-08-20 17:08:38 UTC (rev 172)
+++ pkg/stacomir/man/charge-Refpar-method.Rd 2016-08-20 20:12:58 UTC (rev 173)
@@ -14,9 +14,11 @@
Loading method for Repar referential objects
}
\examples{
+\dontrun{
object=new("Refpar")
charge(object)
}
+}
\author{
Cedric Briand \email{cedric.briand"at"eptb-vilaine.fr}
}
Modified: pkg/stacomir/man/charge-Refparqual-method.Rd
===================================================================
--- pkg/stacomir/man/charge-Refparqual-method.Rd 2016-08-20 17:08:38 UTC (rev 172)
+++ pkg/stacomir/man/charge-Refparqual-method.Rd 2016-08-20 20:12:58 UTC (rev 173)
@@ -14,9 +14,11 @@
Loading method for Reparqual referential objects
}
\examples{
+\dontrun{
object=new("Refparqual")
charge(object)
}
+}
\author{
Cedric Briand \email{cedric.briand"at"eptb-vilaine.fr}
}
Modified: pkg/stacomir/man/charge-Refparquan-method.Rd
===================================================================
--- pkg/stacomir/man/charge-Refparquan-method.Rd 2016-08-20 17:08:38 UTC (rev 172)
+++ pkg/stacomir/man/charge-Refparquan-method.Rd 2016-08-20 20:12:58 UTC (rev 173)
@@ -14,9 +14,11 @@
Loading method for Reparquan referential objects
}
\examples{
+\dontrun{
object=new("Refparquan")
charge(object)
}
+}
\author{
Cedric Briand \email{cedric.briand"at"eptb-vilaine.fr}
}
Modified: pkg/stacomir/man/charge_avec_filtre-RefMsg-method.Rd
===================================================================
--- pkg/stacomir/man/charge_avec_filtre-RefMsg-method.Rd 2016-08-20 17:08:38 UTC (rev 172)
+++ pkg/stacomir/man/charge_avec_filtre-RefMsg-method.Rd 2016-08-20 20:12:58 UTC (rev 173)
@@ -14,9 +14,11 @@
searching ref.ts_messagerlang_mrl for the lines corresponding to lang
}
\examples{
+\dontrun{
object=new("RefMsg")
charge_avec_filtre(object,lang='French')
}
+}
\author{
Cedric Briand \email{cedric.briand"at"eptb-vilaine.fr}
}
Modified: pkg/stacomir/man/charge_avec_filtre-RefStades-method.Rd
===================================================================
--- pkg/stacomir/man/charge_avec_filtre-RefStades-method.Rd 2016-08-20 17:08:38 UTC (rev 172)
+++ pkg/stacomir/man/charge_avec_filtre-RefStades-method.Rd 2016-08-20 20:12:58 UTC (rev 173)
@@ -15,11 +15,13 @@
Loading method for RefStades referential objects searching only those stages existing for a DC and a Taxon
}
\examples{
+\dontrun{
dc_selectionne=6
taxon_selectionne=2038
object=new("RefStades")
charge_avec_filtre(object,dc_selectionne,taxon_selectionne)
}
+}
\author{
Cedric Briand \email{cedric.briand"at"eptb-vilaine.fr}
}
Modified: pkg/stacomir/man/charge_avec_filtre-Refpar-method.Rd
===================================================================
--- pkg/stacomir/man/charge_avec_filtre-Refpar-method.Rd 2016-08-20 17:08:38 UTC (rev 172)
+++ pkg/stacomir/man/charge_avec_filtre-Refpar-method.Rd 2016-08-20 20:12:58 UTC (rev 173)
@@ -15,9 +15,11 @@
Loading method for Repar referential objects searching only those parameters existing for a DC, a Taxon, and a stade
}
\examples{
+\dontrun{
object=new("Refpar")
charge_avec_filtre(object,dc_selectionne=6,taxon_selectionne=2038,stade_selectionne="CIV")
}
+}
\author{
Cedric Briand \email{cedric.briand"at"eptb-vilaine.fr}
}
Modified: pkg/stacomir/man/charge_avec_filtre-Refparqual-method.Rd
===================================================================
--- pkg/stacomir/man/charge_avec_filtre-Refparqual-method.Rd 2016-08-20 17:08:38 UTC (rev 172)
+++ pkg/stacomir/man/charge_avec_filtre-Refparqual-method.Rd 2016-08-20 20:12:58 UTC (rev 173)
@@ -15,12 +15,14 @@
Loading method for Reparqual referential objects searching only those parameters existing for a DC, a Taxon, and a stade
}
\examples{
+\dontrun{
dc_selectionne=6
taxon_selectionne=2038
stade_selectionne="AGJ"
object=new("Refparqual")
charge_avec_filtre(object,dc_selectionne,taxon_selectionne,stade_selectionne)
}
+}
\author{
Cedric Briand \email{cedric.briand"at"eptb-vilaine.fr}
}
Modified: pkg/stacomir/man/charge_avec_filtre-Refparquan-method.Rd
===================================================================
--- pkg/stacomir/man/charge_avec_filtre-Refparquan-method.Rd 2016-08-20 17:08:38 UTC (rev 172)
+++ pkg/stacomir/man/charge_avec_filtre-Refparquan-method.Rd 2016-08-20 20:12:58 UTC (rev 173)
@@ -15,11 +15,13 @@
Loading method for Reparquan referential objects searching only those parameters existing for a DC, a Taxon, and a stade
}
\examples{
+\dontrun{
dc_selectionne=6
taxon_selectionne=2038
stade_selectionne="AGJ"
object=new("Refparquan")
- charge_avec_filtre(object,dc_selectionne,taxon_selectionne,stade_selectionne)
+ charge_avec_filtre(object,dc_selectionne,taxon_selectionne,stade_selectionne)
+}
}
\author{
Cedric Briand \email{cedric.briand"at"eptb-vilaine.fr}
Modified: pkg/stacomir/man/charge_complement-Refparqual-method.Rd
===================================================================
--- pkg/stacomir/man/charge_complement-Refparqual-method.Rd 2016-08-20 17:08:38 UTC (rev 172)
+++ pkg/stacomir/man/charge_complement-Refparqual-method.Rd 2016-08-20 20:12:58 UTC (rev 173)
@@ -18,12 +18,14 @@
et permet de lancer une requete pour obtenir un complement, ici les valeurs possibles d'un parametre qualitatif
}
\examples{
+\dontrun{
dc_selectionne=6
taxon_selectionne=2038
stade_selectionne="AGJ"
object=new("Refparqual")
object<-charge(object)
- charge_complement(object)
+ charge_complement(object)
+}
}
\author{
Cedric Briand \email{cedric.briand"at"eptb-vilaine.fr}
Modified: pkg/stacomir/man/choice-RefAnnee-method.Rd
===================================================================
--- pkg/stacomir/man/choice-RefAnnee-method.Rd 2016-08-20 17:08:38 UTC (rev 172)
+++ pkg/stacomir/man/choice-RefAnnee-method.Rd 2016-08-20 20:12:58 UTC (rev 173)
@@ -22,13 +22,16 @@
Allows the selection of year and the assignment in environment envir_stacomi
}
\examples{
- object=new("RefAnnee")
+
+\dontrun{
+object=new("RefAnnee")
object<-charge(object)
win=gwindow(title="test refAnnee")
group=ggroup(container=win,horizontal=FALSE)
choice(object,nomassign="refAnnee",funoutlabel="essai",titleFrame="essai RefAnnee",preselect=1)
dispose(win)
}
+}
\author{
Cedric Briand \email{cedric.briand"at"eptb-vilaine.fr}
}
Modified: pkg/stacomir/man/choice-RefCheckBox-method.Rd
===================================================================
--- pkg/stacomir/man/choice-RefCheckBox-method.Rd 2016-08-20 17:08:38 UTC (rev 172)
+++ pkg/stacomir/man/choice-RefCheckBox-method.Rd 2016-08-20 20:12:58 UTC (rev 173)
@@ -11,6 +11,7 @@
Choice method for ReCheckBox referential objects
}
\examples{
+\dontrun{
object=new("RefCheckBox")
object<- charge(object,title="essai",labels=c("par1","par2","par3"),checked=c(TRUE,TRUE,TRUE))
win=gwindow(title="test RefCheckBox")
@@ -18,6 +19,7 @@
choice(object)
dispose(win)
}
+}
\author{
Cedric Briand \email{cedric.briand"at"eptb-vilaine.fr}
}
Modified: pkg/stacomir/man/choice-RefListe-method.Rd
===================================================================
--- pkg/stacomir/man/choice-RefListe-method.Rd 2016-08-20 17:08:38 UTC (rev 172)
+++ pkg/stacomir/man/choice-RefListe-method.Rd 2016-08-20 20:12:58 UTC (rev 173)
@@ -15,12 +15,14 @@
}
\examples{
+\dontrun{
object=new("RefListe")
win=gwindow()
group=ggroup(container=win,horizontal=FALSE)
object<-charge(object)
choice(object)
}
+}
\author{
Cedric Briand \email{cedric.briand"at"eptb-vilaine.fr}
}
Modified: pkg/stacomir/man/choice-RefStades-method.Rd
===================================================================
--- pkg/stacomir/man/choice-RefStades-method.Rd 2016-08-20 17:08:38 UTC (rev 172)
+++ pkg/stacomir/man/choice-RefStades-method.Rd 2016-08-20 20:12:58 UTC (rev 173)
@@ -14,14 +14,16 @@
the method tests if the load is called from within a "bilan" object, and loads par, parqual, or parquan objects accordingly
}
\examples{
+\dontrun{
object=new("RefStades")
win=gwindow()
group=ggroup(container=win,horizontal=FALSE)
object<-charge(object)
bilanMigrationPar=new(BilanMigrationPar)
-# objectBilan=bilan_taille # pour autre test
+objectBilan=bilan_taille # for another test
choice(object,objectBilan=bilanMigrationPar)
}
+}
\author{
Cedric Briand \email{cedric.briand"at"eptb-vilaine.fr}
}
Modified: pkg/stacomir/man/choice-RefStationMesure-method.Rd
===================================================================
--- pkg/stacomir/man/choice-RefStationMesure-method.Rd 2016-08-20 17:08:38 UTC (rev 172)
+++ pkg/stacomir/man/choice-RefStationMesure-method.Rd 2016-08-20 20:12:58 UTC (rev 173)
@@ -13,12 +13,14 @@
}
\examples{
+\dontrun{
object=new("RefStationMesure")
win=gwindow()
group=ggroup(container=win,horizontal=FALSE)
object<-charge(object)
choice(object)
}
+}
\author{
Cedric Briand \email{cedric.briand"at"eptb-vilaine.fr}
}
Modified: pkg/stacomir/man/choice-RefTextBox-method.Rd
===================================================================
--- pkg/stacomir/man/choice-RefTextBox-method.Rd 2016-08-20 17:08:38 UTC (rev 172)
+++ pkg/stacomir/man/choice-RefTextBox-method.Rd 2016-08-20 20:12:58 UTC (rev 173)
@@ -11,6 +11,7 @@
Choice method for ReTextBox referential objects
}
\examples{
+\dontrun{
object=new("RefTextBox")
[TRUNCATED]
To get the complete diff run:
svnlook diff /svnroot/stacomir -r 173
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