[spcopula-commits] r163 - in pkg: . R tests/Examples
noreply at r-forge.r-project.org
noreply at r-forge.r-project.org
Wed Feb 8 10:10:02 CET 2017
Author: ben_graeler
Date: 2017-02-08 10:10:02 +0100 (Wed, 08 Feb 2017)
New Revision: 163
Modified:
pkg/DESCRIPTION
pkg/R/spVineCopula.R
pkg/R/stCoVarVineCopula.R
pkg/R/stVineCopula.R
pkg/tests/Examples/spcopula-Ex.Rout.save
Log:
remove "estmate.variance" from fitCopula in spVines
Modified: pkg/DESCRIPTION
===================================================================
--- pkg/DESCRIPTION 2017-02-07 11:35:01 UTC (rev 162)
+++ pkg/DESCRIPTION 2017-02-08 09:10:02 UTC (rev 163)
@@ -2,7 +2,7 @@
Type: Package
Title: Copula Driven Analysis - Multivariate, Spatial, Spatio-Temporal
Version: 0.2-2
-Date: 2017-02-07
+Date: 2017-02-08
Authors at R: c(person("Benedikt", "Graeler", role = c("aut", "cre"),
email = "b.graeler at 52north.org"),
person("Marius", "Appel",role = "ctb"))
Modified: pkg/R/spVineCopula.R
===================================================================
--- pkg/R/spVineCopula.R 2017-02-07 11:35:01 UTC (rev 162)
+++ pkg/R/spVineCopula.R 2017-02-08 09:10:02 UTC (rev 163)
@@ -131,7 +131,7 @@
loglik <- dCopula(topCop,u0,log=TRUE)
} else {
cat("[Estimating a",ncol(u0),"dimensional copula at the top.]\n")
- vineCopFit <- fitCopula(copula at topCop, u0, method, estimate.variance)
+ vineCopFit <- fitCopula(copula at topCop, u0, method)
spVineCop <- spVineCopula(copula at spCop, vineCopFit at copula)
loglik <- vineCopFit at loglik
Modified: pkg/R/stCoVarVineCopula.R
===================================================================
--- pkg/R/stCoVarVineCopula.R 2017-02-07 11:35:01 UTC (rev 162)
+++ pkg/R/stCoVarVineCopula.R 2017-02-08 09:10:02 UTC (rev 163)
@@ -110,7 +110,7 @@
# cat("]\n")
#
# cat("[Estimating a",ncol(u0),"dimensional copula at the top.]\n")
-# vineCopFit <- fitCopula(copula at topCop, u0, method, estimate.variance)
+# vineCopFit <- fitCopula(copula at topCop, u0, method)
#
# stVineCop <- stVineCopula(copula at stCop, vineCopFit at copula)
# loglik <- vineCopFit at loglik
Modified: pkg/R/stVineCopula.R
===================================================================
--- pkg/R/stVineCopula.R 2017-02-07 11:35:01 UTC (rev 162)
+++ pkg/R/stVineCopula.R 2017-02-08 09:10:02 UTC (rev 163)
@@ -95,7 +95,7 @@
cat("]\n")
cat("[Estimating a",ncol(u0),"dimensional copula at the top.]\n")
- vineCopFit <- fitCopula(copula at topCop, u0, method, estimate.variance)
+ vineCopFit <- fitCopula(copula at topCop, u0, method)
stVineCop <- stVineCopula(copula at stCop, vineCopFit at copula)
loglik <- vineCopFit at loglik
Modified: pkg/tests/Examples/spcopula-Ex.Rout.save
===================================================================
--- pkg/tests/Examples/spcopula-Ex.Rout.save 2017-02-07 11:35:01 UTC (rev 162)
+++ pkg/tests/Examples/spcopula-Ex.Rout.save 2017-02-08 09:10:02 UTC (rev 163)
@@ -19,18 +19,6 @@
> source(file.path(R.home("share"), "R", "examples-header.R"))
> options(warn = 1)
> options(pager = "console")
-> base::assign(".ExTimings", "spcopula-Ex.timings", pos = 'CheckExEnv')
-> base::cat("name\tuser\tsystem\telapsed\n", file=base::get(".ExTimings", pos = 'CheckExEnv'))
-> base::assign(".format_ptime",
-+ function(x) {
-+ if(!is.na(x[4L])) x[1L] <- x[1L] + x[4L]
-+ if(!is.na(x[5L])) x[2L] <- x[2L] + x[5L]
-+ options(OutDec = '.')
-+ format(x[1L:3L], digits = 7L)
-+ },
-+ pos = 'CheckExEnv')
->
-> ### * </HEADER>
> library('spcopula')
Loading required package: copula
Loading required package: VineCopula
@@ -42,7 +30,6 @@
>
> flush(stderr()); flush(stdout())
>
-> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: EU_RB
> ### Title: Daily mean PM10 concentrations over Europe in June and July 2005
> ### Aliases: EU_RB
@@ -82,15 +69,12 @@
>
>
>
-> base::assign(".dptime", (proc.time() - get(".ptime", pos = "CheckExEnv")), pos = "CheckExEnv")
-> base::cat("EU_RB", base::get(".format_ptime", pos = 'CheckExEnv')(get(".dptime", pos = "CheckExEnv")), "\n", file=base::get(".ExTimings", pos = 'CheckExEnv'), append=TRUE, sep="\t")
> cleanEx()
> nameEx("EU_RB_2005")
> ### * EU_RB_2005
>
> flush(stderr()); flush(stdout())
>
-> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: EU_RB_2005
> ### Title: Daily mean PM10 concentrations over Europe in 2005 as used in
> ### the JSS manuscript
@@ -139,15 +123,12 @@
>
>
>
-> base::assign(".dptime", (proc.time() - get(".ptime", pos = "CheckExEnv")), pos = "CheckExEnv")
-> base::cat("EU_RB_2005", base::get(".format_ptime", pos = 'CheckExEnv')(get(".dptime", pos = "CheckExEnv")), "\n", file=base::get(".ExTimings", pos = 'CheckExEnv'), append=TRUE, sep="\t")
> cleanEx()
> nameEx("asCopula-class")
> ### * asCopula-class
>
> flush(stderr()); flush(stdout())
>
-> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: asCopula-class
> ### Title: Class '"asCopula"'
> ### Aliases: asCopula-class dduCopula,matrix,asCopula-method
@@ -177,15 +158,12 @@
>
>
>
-> base::assign(".dptime", (proc.time() - get(".ptime", pos = "CheckExEnv")), pos = "CheckExEnv")
-> base::cat("asCopula-class", base::get(".format_ptime", pos = 'CheckExEnv')(get(".dptime", pos = "CheckExEnv")), "\n", file=base::get(".ExTimings", pos = 'CheckExEnv'), append=TRUE, sep="\t")
> cleanEx()
> nameEx("asCopula")
> ### * asCopula
>
> flush(stderr()); flush(stdout())
>
-> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: asCopula
> ### Title: Constructor of an asymmetric copula with cubic and quadratic
> ### sections (Nelsen 2006).
@@ -226,8 +204,6 @@
>
>
>
-> base::assign(".dptime", (proc.time() - get(".ptime", pos = "CheckExEnv")), pos = "CheckExEnv")
-> base::cat("asCopula", base::get(".format_ptime", pos = 'CheckExEnv')(get(".dptime", pos = "CheckExEnv")), "\n", file=base::get(".ExTimings", pos = 'CheckExEnv'), append=TRUE, sep="\t")
> graphics::par(get("par.postscript", pos = 'CheckExEnv'))
> cleanEx()
> nameEx("bivTailDepFun")
@@ -235,7 +211,6 @@
>
> flush(stderr()); flush(stdout())
>
-> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: bivJointDepFun
> ### Title: Bivariate joint dependence functions
> ### Aliases: bivJointDepFun lowerBivJointDepFun upperBivJointDepFun
@@ -271,15 +246,12 @@
>
>
>
-> base::assign(".dptime", (proc.time() - get(".ptime", pos = "CheckExEnv")), pos = "CheckExEnv")
-> base::cat("bivTailDepFun", base::get(".format_ptime", pos = 'CheckExEnv')(get(".dptime", pos = "CheckExEnv")), "\n", file=base::get(".ExTimings", pos = 'CheckExEnv'), append=TRUE, sep="\t")
> cleanEx()
> nameEx("calcBins")
> ### * calcBins
>
> flush(stderr()); flush(stdout())
>
-> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: calcBins
> ### Title: A function calculating the spatial/spatio-temporal bins
> ### Aliases: calcBins calcBins-methods calcBins,Spatial-method
@@ -298,8 +270,6 @@
>
>
>
-> base::assign(".dptime", (proc.time() - get(".ptime", pos = "CheckExEnv")), pos = "CheckExEnv")
-> base::cat("calcBins", base::get(".format_ptime", pos = 'CheckExEnv')(get(".dptime", pos = "CheckExEnv")), "\n", file=base::get(".ExTimings", pos = 'CheckExEnv'), append=TRUE, sep="\t")
> cleanEx()
detaching 'package:sp'
@@ -309,7 +279,6 @@
>
> flush(stderr()); flush(stdout())
>
-> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: composeSpCopula
> ### Title: Composing a bivariate Spatial Copula
> ### Aliases: composeSpCopula
@@ -329,15 +298,12 @@
>
>
>
-> base::assign(".dptime", (proc.time() - get(".ptime", pos = "CheckExEnv")), pos = "CheckExEnv")
-> base::cat("composeSpCopula", base::get(".format_ptime", pos = 'CheckExEnv')(get(".dptime", pos = "CheckExEnv")), "\n", file=base::get(".ExTimings", pos = 'CheckExEnv'), append=TRUE, sep="\t")
> cleanEx()
> nameEx("condCovariate")
> ### * condCovariate
>
> flush(stderr()); flush(stdout())
>
-> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: condCovariate
> ### Title: Conditioning of a Covariate
> ### Aliases: condCovariate
@@ -366,8 +332,6 @@
>
>
>
-> base::assign(".dptime", (proc.time() - get(".ptime", pos = "CheckExEnv")), pos = "CheckExEnv")
-> base::cat("condCovariate", base::get(".format_ptime", pos = 'CheckExEnv')(get(".dptime", pos = "CheckExEnv")), "\n", file=base::get(".ExTimings", pos = 'CheckExEnv'), append=TRUE, sep="\t")
> cleanEx()
detaching 'package:spacetime', 'package:sp'
@@ -377,7 +341,6 @@
>
> flush(stderr()); flush(stdout())
>
-> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: condSpVine
> ### Title: Conditions a spatial vine copula for conditional prediction
> ### Aliases: condSpVine
@@ -427,15 +390,12 @@
>
>
>
-> base::assign(".dptime", (proc.time() - get(".ptime", pos = "CheckExEnv")), pos = "CheckExEnv")
-> base::cat("condSpVine", base::get(".format_ptime", pos = 'CheckExEnv')(get(".dptime", pos = "CheckExEnv")), "\n", file=base::get(".ExTimings", pos = 'CheckExEnv'), append=TRUE, sep="\t")
> cleanEx()
> nameEx("condStCoVarVine")
> ### * condStCoVarVine
>
> flush(stderr()); flush(stdout())
>
-> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: condStCoVarVine
> ### Title: conditional distribution function of spatio-temporal covariate
> ### vine copula
@@ -473,15 +433,12 @@
>
>
>
-> base::assign(".dptime", (proc.time() - get(".ptime", pos = "CheckExEnv")), pos = "CheckExEnv")
-> base::cat("condStCoVarVine", base::get(".format_ptime", pos = 'CheckExEnv')(get(".dptime", pos = "CheckExEnv")), "\n", file=base::get(".ExTimings", pos = 'CheckExEnv'), append=TRUE, sep="\t")
> cleanEx()
> nameEx("condStVine")
> ### * condStVine
>
> flush(stderr()); flush(stdout())
>
-> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: condStVine
> ### Title: Conditions a spatio-temporal vine copula for conditional
> ### prediction
@@ -517,15 +474,12 @@
>
>
>
-> base::assign(".dptime", (proc.time() - get(".ptime", pos = "CheckExEnv")), pos = "CheckExEnv")
-> base::cat("condStVine", base::get(".format_ptime", pos = 'CheckExEnv')(get(".dptime", pos = "CheckExEnv")), "\n", file=base::get(".ExTimings", pos = 'CheckExEnv'), append=TRUE, sep="\t")
> cleanEx()
> nameEx("cqsCopula-class")
> ### * cqsCopula-class
>
> flush(stderr()); flush(stdout())
>
-> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: cqsCopula-class
> ### Title: Class '"cqsCopula"'
> ### Aliases: cqsCopula-class dduCopula,matrix,cqsCopula-method
@@ -555,15 +509,12 @@
>
>
>
-> base::assign(".dptime", (proc.time() - get(".ptime", pos = "CheckExEnv")), pos = "CheckExEnv")
-> base::cat("cqsCopula-class", base::get(".format_ptime", pos = 'CheckExEnv')(get(".dptime", pos = "CheckExEnv")), "\n", file=base::get(".ExTimings", pos = 'CheckExEnv'), append=TRUE, sep="\t")
> cleanEx()
> nameEx("cqsCopula")
> ### * cqsCopula
>
> flush(stderr()); flush(stdout())
>
-> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: cqsCopula
> ### Title: Constructor of a symmetric copula with cubic quadratic sections.
> ### Aliases: cqsCopula
@@ -603,8 +554,6 @@
>
>
>
-> base::assign(".dptime", (proc.time() - get(".ptime", pos = "CheckExEnv")), pos = "CheckExEnv")
-> base::cat("cqsCopula", base::get(".format_ptime", pos = 'CheckExEnv')(get(".dptime", pos = "CheckExEnv")), "\n", file=base::get(".ExTimings", pos = 'CheckExEnv'), append=TRUE, sep="\t")
> graphics::par(get("par.postscript", pos = 'CheckExEnv'))
> cleanEx()
> nameEx("criticalLevel")
@@ -612,7 +561,6 @@
>
> flush(stderr()); flush(stdout())
>
-> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: criticalLevel
> ### Title: Calculating the critical level for a given Kendall Return Period
> ### Aliases: criticalLevel
@@ -625,15 +573,12 @@
>
>
>
-> base::assign(".dptime", (proc.time() - get(".ptime", pos = "CheckExEnv")), pos = "CheckExEnv")
-> base::cat("criticalLevel", base::get(".format_ptime", pos = 'CheckExEnv')(get(".dptime", pos = "CheckExEnv")), "\n", file=base::get(".ExTimings", pos = 'CheckExEnv'), append=TRUE, sep="\t")
> cleanEx()
> nameEx("criticalPair")
> ### * criticalPair
>
> flush(stderr()); flush(stdout())
>
-> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: criticalPair
> ### Title: Calculate Critical Pairs
> ### Aliases: criticalPair
@@ -647,15 +592,12 @@
>
>
>
-> base::assign(".dptime", (proc.time() - get(".ptime", pos = "CheckExEnv")), pos = "CheckExEnv")
-> base::cat("criticalPair", base::get(".format_ptime", pos = 'CheckExEnv')(get(".dptime", pos = "CheckExEnv")), "\n", file=base::get(".ExTimings", pos = 'CheckExEnv'), append=TRUE, sep="\t")
> cleanEx()
> nameEx("criticalTriple")
> ### * criticalTriple
>
> flush(stderr()); flush(stdout())
>
-> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: criticalTriple
> ### Title: calculate critical triples
> ### Aliases: criticalTriple
@@ -672,15 +614,12 @@
>
>
>
-> base::assign(".dptime", (proc.time() - get(".ptime", pos = "CheckExEnv")), pos = "CheckExEnv")
-> base::cat("criticalTriple", base::get(".format_ptime", pos = 'CheckExEnv')(get(".dptime", pos = "CheckExEnv")), "\n", file=base::get(".ExTimings", pos = 'CheckExEnv'), append=TRUE, sep="\t")
> cleanEx()
> nameEx("dduCopula")
> ### * dduCopula
>
> flush(stderr()); flush(stdout())
>
-> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: dduCopula
> ### Title: partial derivatives of copulas
> ### Aliases: dduCopula ddvCopula
@@ -718,15 +657,12 @@
>
>
>
-> base::assign(".dptime", (proc.time() - get(".ptime", pos = "CheckExEnv")), pos = "CheckExEnv")
-> base::cat("dduCopula", base::get(".format_ptime", pos = 'CheckExEnv')(get(".dptime", pos = "CheckExEnv")), "\n", file=base::get(".ExTimings", pos = 'CheckExEnv'), append=TRUE, sep="\t")
> cleanEx()
> nameEx("dependencePlot")
> ### * dependencePlot
>
> flush(stderr()); flush(stdout())
>
-> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: dependencePlot
> ### Title: Kernel smoothed scatter plot
> ### Aliases: dependencePlot
@@ -738,15 +674,12 @@
>
>
>
-> base::assign(".dptime", (proc.time() - get(".ptime", pos = "CheckExEnv")), pos = "CheckExEnv")
-> base::cat("dependencePlot", base::get(".format_ptime", pos = 'CheckExEnv')(get(".dptime", pos = "CheckExEnv")), "\n", file=base::get(".ExTimings", pos = 'CheckExEnv'), append=TRUE, sep="\t")
> cleanEx()
> nameEx("empSurCopula-class")
> ### * empSurCopula-class
>
> flush(stderr()); flush(stdout())
>
-> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: empSurCopula-class
> ### Title: Class '"empiricalCopula"'
> ### Aliases: empSurCopula-class
@@ -772,15 +705,12 @@
>
>
>
-> base::assign(".dptime", (proc.time() - get(".ptime", pos = "CheckExEnv")), pos = "CheckExEnv")
-> base::cat("empSurCopula-class", base::get(".format_ptime", pos = 'CheckExEnv')(get(".dptime", pos = "CheckExEnv")), "\n", file=base::get(".ExTimings", pos = 'CheckExEnv'), append=TRUE, sep="\t")
> cleanEx()
> nameEx("empSurCopula")
> ### * empSurCopula
>
> flush(stderr()); flush(stdout())
>
-> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: empSurCopula
> ### Title: Constructor of an empirical survival copula class
> ### Aliases: empSurCopula
@@ -832,15 +762,12 @@
>
>
>
-> base::assign(".dptime", (proc.time() - get(".ptime", pos = "CheckExEnv")), pos = "CheckExEnv")
-> base::cat("empSurCopula", base::get(".format_ptime", pos = 'CheckExEnv')(get(".dptime", pos = "CheckExEnv")), "\n", file=base::get(".ExTimings", pos = 'CheckExEnv'), append=TRUE, sep="\t")
> cleanEx()
> nameEx("empiricalCopula-class")
> ### * empiricalCopula-class
>
> flush(stderr()); flush(stdout())
>
-> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: empiricalCopula-class
> ### Title: Class '"empiricalCopula"'
> ### Aliases: empiricalCopula-class
@@ -866,15 +793,12 @@
>
>
>
-> base::assign(".dptime", (proc.time() - get(".ptime", pos = "CheckExEnv")), pos = "CheckExEnv")
-> base::cat("empiricalCopula-class", base::get(".format_ptime", pos = 'CheckExEnv')(get(".dptime", pos = "CheckExEnv")), "\n", file=base::get(".ExTimings", pos = 'CheckExEnv'), append=TRUE, sep="\t")
> cleanEx()
> nameEx("empiricalCopula")
> ### * empiricalCopula
>
> flush(stderr()); flush(stdout())
>
-> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: empiricalCopula
> ### Title: Constructor of an empirical copula class
> ### Aliases: empiricalCopula
@@ -926,15 +850,12 @@
>
>
>
-> base::assign(".dptime", (proc.time() - get(".ptime", pos = "CheckExEnv")), pos = "CheckExEnv")
-> base::cat("empiricalCopula", base::get(".format_ptime", pos = 'CheckExEnv')(get(".dptime", pos = "CheckExEnv")), "\n", file=base::get(".ExTimings", pos = 'CheckExEnv'), append=TRUE, sep="\t")
> cleanEx()
> nameEx("fitCorFun")
> ### * fitCorFun
>
> flush(stderr()); flush(stdout())
>
-> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: fitCorFun
> ### Title: Automated fitting of a correlation function to the correlogram
> ### Aliases: fitCorFun
@@ -980,15 +901,12 @@
>
>
>
-> base::assign(".dptime", (proc.time() - get(".ptime", pos = "CheckExEnv")), pos = "CheckExEnv")
-> base::cat("fitCorFun", base::get(".format_ptime", pos = 'CheckExEnv')(get(".dptime", pos = "CheckExEnv")), "\n", file=base::get(".ExTimings", pos = 'CheckExEnv'), append=TRUE, sep="\t")
> cleanEx()
> nameEx("fitSpCopula")
> ### * fitSpCopula
>
> flush(stderr()); flush(stdout())
>
-> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: fitSpCopula
> ### Title: Spatial Copula Fitting
> ### Aliases: fitSpCopula
@@ -1155,8 +1073,6 @@
>
>
>
-> base::assign(".dptime", (proc.time() - get(".ptime", pos = "CheckExEnv")), pos = "CheckExEnv")
-> base::cat("fitSpCopula", base::get(".format_ptime", pos = 'CheckExEnv')(get(".dptime", pos = "CheckExEnv")), "\n", file=base::get(".ExTimings", pos = 'CheckExEnv'), append=TRUE, sep="\t")
> cleanEx()
detaching 'package:sp'
@@ -1166,7 +1082,6 @@
>
> flush(stderr()); flush(stdout())
>
-> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: genEmpCop
> ### Title: Generate an empirical copula
> ### Aliases: genEmpCop genEmpSurCop
@@ -1187,15 +1102,12 @@
>
>
>
-> base::assign(".dptime", (proc.time() - get(".ptime", pos = "CheckExEnv")), pos = "CheckExEnv")
-> base::cat("genEmpCop", base::get(".format_ptime", pos = 'CheckExEnv')(get(".dptime", pos = "CheckExEnv")), "\n", file=base::get(".ExTimings", pos = 'CheckExEnv'), append=TRUE, sep="\t")
> cleanEx()
> nameEx("genEmpKenFun")
> ### * genEmpKenFun
>
> flush(stderr()); flush(stdout())
>
-> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: genEmpKenFun
> ### Title: Generates an empirical Kendall distribution function
> ### Aliases: genEmpKenFun
@@ -1209,15 +1121,12 @@
>
>
>
-> base::assign(".dptime", (proc.time() - get(".ptime", pos = "CheckExEnv")), pos = "CheckExEnv")
-> base::cat("genEmpKenFun", base::get(".format_ptime", pos = 'CheckExEnv')(get(".dptime", pos = "CheckExEnv")), "\n", file=base::get(".ExTimings", pos = 'CheckExEnv'), append=TRUE, sep="\t")
> cleanEx()
> nameEx("genInvKenFun")
> ### * genInvKenFun
>
> flush(stderr()); flush(stdout())
>
-> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: genInvKenFun
> ### Title: Generate the inverse Kendall distribution function
> ### Aliases: genInvKenFun
@@ -1235,15 +1144,12 @@
>
>
>
-> base::assign(".dptime", (proc.time() - get(".ptime", pos = "CheckExEnv")), pos = "CheckExEnv")
-> base::cat("genInvKenFun", base::get(".format_ptime", pos = 'CheckExEnv')(get(".dptime", pos = "CheckExEnv")), "\n", file=base::get(".ExTimings", pos = 'CheckExEnv'), append=TRUE, sep="\t")
> cleanEx()
> nameEx("getKendallDistr")
> ### * getKendallDistr
>
> flush(stderr()); flush(stdout())
>
-> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: getKendallDistr
> ### Title: Retrieving the Kendall Distribution function for a given copula
> ### Aliases: getKendallDistr getKendallDistr,claytonCopula-method
@@ -1261,15 +1167,12 @@
>
>
>
-> base::assign(".dptime", (proc.time() - get(".ptime", pos = "CheckExEnv")), pos = "CheckExEnv")
-> base::cat("getKendallDistr", base::get(".format_ptime", pos = 'CheckExEnv')(get(".dptime", pos = "CheckExEnv")), "\n", file=base::get(".ExTimings", pos = 'CheckExEnv'), append=TRUE, sep="\t")
> cleanEx()
> nameEx("getNeighbours")
> ### * getNeighbours
>
> flush(stderr()); flush(stdout())
>
-> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: getNeighbours
> ### Title: Creating Local Neighbourhoods
> ### Aliases: getNeighbours
@@ -1288,8 +1191,6 @@
>
>
>
-> base::assign(".dptime", (proc.time() - get(".ptime", pos = "CheckExEnv")), pos = "CheckExEnv")
-> base::cat("getNeighbours", base::get(".format_ptime", pos = 'CheckExEnv')(get(".dptime", pos = "CheckExEnv")), "\n", file=base::get(".ExTimings", pos = 'CheckExEnv'), append=TRUE, sep="\t")
> cleanEx()
detaching 'package:sp'
@@ -1299,7 +1200,6 @@
>
> flush(stderr()); flush(stdout())
>
-> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: getStNeighbours
> ### Title: Creating Local Spatio-Temporal Neighbourhoods
> ### Aliases: getStNeighbours
@@ -1326,8 +1226,6 @@
>
>
>
-> base::assign(".dptime", (proc.time() - get(".ptime", pos = "CheckExEnv")), pos = "CheckExEnv")
-> base::cat("getStNeighbours", base::get(".format_ptime", pos = 'CheckExEnv')(get(".dptime", pos = "CheckExEnv")), "\n", file=base::get(".ExTimings", pos = 'CheckExEnv'), append=TRUE, sep="\t")
> cleanEx()
detaching 'package:spacetime', 'package:sp'
@@ -1337,7 +1235,6 @@
>
> flush(stderr()); flush(stdout())
>
-> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: hkCopula-class
> ### Title: Class '"hkCopula"'
> ### Aliases: hkCopula-class
@@ -1363,15 +1260,12 @@
>
>
>
-> base::assign(".dptime", (proc.time() - get(".ptime", pos = "CheckExEnv")), pos = "CheckExEnv")
-> base::cat("hkCopula-class", base::get(".format_ptime", pos = 'CheckExEnv')(get(".dptime", pos = "CheckExEnv")), "\n", file=base::get(".ExTimings", pos = 'CheckExEnv'), append=TRUE, sep="\t")
> cleanEx()
> nameEx("hkCopula")
> ### * hkCopula
>
> flush(stderr()); flush(stdout())
>
-> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: hkCopula
> ### Title: Constructor of a hierarchical Kendall copula
> ### Aliases: hkCopula
@@ -1417,15 +1311,12 @@
>
>
>
-> base::assign(".dptime", (proc.time() - get(".ptime", pos = "CheckExEnv")), pos = "CheckExEnv")
-> base::cat("hkCopula", base::get(".format_ptime", pos = 'CheckExEnv')(get(".dptime", pos = "CheckExEnv")), "\n", file=base::get(".ExTimings", pos = 'CheckExEnv'), append=TRUE, sep="\t")
> cleanEx()
> nameEx("kendallDistribution")
> ### * kendallDistribution
>
> flush(stderr()); flush(stdout())
>
-> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: kendallDistribution
> ### Title: The Kendall distribution
> ### Aliases: kendallDistribution kendallDistribution,claytonCopula-method
@@ -1444,15 +1335,12 @@
>
>
>
-> base::assign(".dptime", (proc.time() - get(".ptime", pos = "CheckExEnv")), pos = "CheckExEnv")
-> base::cat("kendallDistribution", base::get(".format_ptime", pos = 'CheckExEnv')(get(".dptime", pos = "CheckExEnv")), "\n", file=base::get(".ExTimings", pos = 'CheckExEnv'), append=TRUE, sep="\t")
> cleanEx()
> nameEx("kendallRP")
> ### * kendallRP
>
> flush(stderr()); flush(stdout())
>
-> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: kendallRP
> ### Title: calculating the Kendall Return Period
> ### Aliases: kendallRP
@@ -1465,15 +1353,12 @@
>
>
>
-> base::assign(".dptime", (proc.time() - get(".ptime", pos = "CheckExEnv")), pos = "CheckExEnv")
-> base::cat("kendallRP", base::get(".format_ptime", pos = 'CheckExEnv')(get(".dptime", pos = "CheckExEnv")), "\n", file=base::get(".ExTimings", pos = 'CheckExEnv'), append=TRUE, sep="\t")
> cleanEx()
> nameEx("loglikByCopulasLags")
> ### * loglikByCopulasLags
>
> flush(stderr()); flush(stdout())
>
-> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: loglikByCopulasLags
> ### Title: Log-likelihoods by copula family and spatial lag class
> ### Aliases: loglikByCopulasLags
@@ -1641,8 +1526,6 @@
>
>
>
-> base::assign(".dptime", (proc.time() - get(".ptime", pos = "CheckExEnv")), pos = "CheckExEnv")
-> base::cat("loglikByCopulasLags", base::get(".format_ptime", pos = 'CheckExEnv')(get(".dptime", pos = "CheckExEnv")), "\n", file=base::get(".ExTimings", pos = 'CheckExEnv'), append=TRUE, sep="\t")
> cleanEx()
detaching 'package:sp'
@@ -1652,7 +1535,6 @@
>
> flush(stderr()); flush(stdout())
>
-> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: loglikByCopulasStLags
> ### Title: Log-likelihoods by copula family and spatio-temporal lag class
> ### Aliases: loglikByCopulasStLags
@@ -1820,8 +1702,6 @@
>
>
>
-> base::assign(".dptime", (proc.time() - get(".ptime", pos = "CheckExEnv")), pos = "CheckExEnv")
-> base::cat("loglikByCopulasStLags", base::get(".format_ptime", pos = 'CheckExEnv')(get(".dptime", pos = "CheckExEnv")), "\n", file=base::get(".ExTimings", pos = 'CheckExEnv'), append=TRUE, sep="\t")
> cleanEx()
detaching 'package:sp'
@@ -1831,7 +1711,6 @@
>
> flush(stderr()); flush(stdout())
>
-> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: mixtureCopula-class
> ### Title: Class '"mixtureCopula"'
> ### Aliases: mixtureCopula-class dduCopula,ANY,mixtureCopula-method
@@ -1860,15 +1739,12 @@
>
>
>
-> base::assign(".dptime", (proc.time() - get(".ptime", pos = "CheckExEnv")), pos = "CheckExEnv")
-> base::cat("mixtureCopula-class", base::get(".format_ptime", pos = 'CheckExEnv')(get(".dptime", pos = "CheckExEnv")), "\n", file=base::get(".ExTimings", pos = 'CheckExEnv'), append=TRUE, sep="\t")
> cleanEx()
> nameEx("mixtureCopula")
> ### * mixtureCopula
>
> flush(stderr()); flush(stdout())
>
-> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: mixtureCopula
> ### Title: Constructor of a mixture copula
> ### Aliases: mixtureCopula
@@ -1908,8 +1784,6 @@
> curve(kenCop, main="Kendall function", asp=1)
>
>
-> base::assign(".dptime", (proc.time() - get(".ptime", pos = "CheckExEnv")), pos = "CheckExEnv")
-> base::cat("mixtureCopula", base::get(".format_ptime", pos = 'CheckExEnv')(get(".dptime", pos = "CheckExEnv")), "\n", file=base::get(".ExTimings", pos = 'CheckExEnv'), append=TRUE, sep="\t")
> graphics::par(get("par.postscript", pos = 'CheckExEnv'))
> cleanEx()
> nameEx("neighbourhood-class")
@@ -1917,7 +1791,6 @@
>
> flush(stderr()); flush(stdout())
>
-> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: neighbourhood-class
> ### Title: Class 'neighbourhood'
> ### Aliases: neighbourhood-class names,neighbourhood-method
@@ -1937,8 +1810,6 @@
>
>
>
-> base::assign(".dptime", (proc.time() - get(".ptime", pos = "CheckExEnv")), pos = "CheckExEnv")
-> base::cat("neighbourhood-class", base::get(".format_ptime", pos = 'CheckExEnv')(get(".dptime", pos = "CheckExEnv")), "\n", file=base::get(".ExTimings", pos = 'CheckExEnv'), append=TRUE, sep="\t")
> cleanEx()
detaching 'package:sp'
@@ -1948,7 +1819,6 @@
>
> flush(stderr()); flush(stdout())
>
-> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: neighbourhood
> ### Title: Constructor of the 'neighbourhood' class.
> ### Aliases: neighbourhood
@@ -1975,8 +1845,6 @@
>
>
>
-> base::assign(".dptime", (proc.time() - get(".ptime", pos = "CheckExEnv")), pos = "CheckExEnv")
-> base::cat("neighbourhood", base::get(".format_ptime", pos = 'CheckExEnv')(get(".dptime", pos = "CheckExEnv")), "\n", file=base::get(".ExTimings", pos = 'CheckExEnv'), append=TRUE, sep="\t")
> cleanEx()
detaching 'package:sp'
@@ -1986,7 +1854,6 @@
>
> flush(stderr()); flush(stdout())
>
-> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: qCopula_u
> ### Title: The inverse of a bivariate copula given u or v
> ### Aliases: qCopula_u qCopula_u,copula-method qCopula_v
@@ -2007,15 +1874,12 @@
>
>
>
-> base::assign(".dptime", (proc.time() - get(".ptime", pos = "CheckExEnv")), pos = "CheckExEnv")
-> base::cat("qCopula_u", base::get(".format_ptime", pos = 'CheckExEnv')(get(".dptime", pos = "CheckExEnv")), "\n", file=base::get(".ExTimings", pos = 'CheckExEnv'), append=TRUE, sep="\t")
> cleanEx()
> nameEx("rCopula_y")
> ### * rCopula_y
>
> flush(stderr()); flush(stdout())
>
-> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: rCopula_y
> ### Title: Sampling from a given contour level
> ### Aliases: rCopula_y rCopula_y-methods rCopula_y,ANY-method
@@ -2029,15 +1893,12 @@
>
>
>
-> base::assign(".dptime", (proc.time() - get(".ptime", pos = "CheckExEnv")), pos = "CheckExEnv")
-> base::cat("rCopula_y", base::get(".format_ptime", pos = 'CheckExEnv')(get(".dptime", pos = "CheckExEnv")), "\n", file=base::get(".ExTimings", pos = 'CheckExEnv'), append=TRUE, sep="\t")
> cleanEx()
> nameEx("rankTransform")
> ### * rankTransform
>
> flush(stderr()); flush(stdout())
>
-> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: rankTransform
> ### Title: rank order transformation of margins
> ### Aliases: rankTransform
@@ -2054,15 +1915,12 @@
>
>
>
-> base::assign(".dptime", (proc.time() - get(".ptime", pos = "CheckExEnv")), pos = "CheckExEnv")
-> base::cat("rankTransform", base::get(".format_ptime", pos = 'CheckExEnv')(get(".dptime", pos = "CheckExEnv")), "\n", file=base::get(".ExTimings", pos = 'CheckExEnv'), append=TRUE, sep="\t")
> cleanEx()
> nameEx("reduceNeighbours")
> ### * reduceNeighbours
>
> flush(stderr()); flush(stdout())
>
-> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: reduceNeighbours
> ### Title: Selecting the strongest correlated neighbours
> ### Aliases: reduceNeighbours
@@ -2108,8 +1966,6 @@
>
>
>
-> base::assign(".dptime", (proc.time() - get(".ptime", pos = "CheckExEnv")), pos = "CheckExEnv")
-> base::cat("reduceNeighbours", base::get(".format_ptime", pos = 'CheckExEnv')(get(".dptime", pos = "CheckExEnv")), "\n", file=base::get(".ExTimings", pos = 'CheckExEnv'), append=TRUE, sep="\t")
> cleanEx()
detaching 'package:spacetime', 'package:sp'
@@ -2119,7 +1975,6 @@
>
> flush(stderr()); flush(stdout())
>
-> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: simulatedTriples
> ### Title: annual extreme rainfall triples
> ### Aliases: triples
@@ -2136,15 +1991,12 @@
>
>
>
-> base::assign(".dptime", (proc.time() - get(".ptime", pos = "CheckExEnv")), pos = "CheckExEnv")
-> base::cat("simulatedTriples", base::get(".format_ptime", pos = 'CheckExEnv')(get(".dptime", pos = "CheckExEnv")), "\n", file=base::get(".ExTimings", pos = 'CheckExEnv'), append=TRUE, sep="\t")
> cleanEx()
> nameEx("spCopDemo")
> ### * spCopDemo
>
> flush(stderr()); flush(stdout())
>
-> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: spCopDemo
> ### Title: workspace produced in 'demo(spCopula)'
> ### Aliases: lokliktau bestFitTau bins calcKTauLin calcKTauPol dataSet
@@ -2159,15 +2011,12 @@
>
>
>
-> base::assign(".dptime", (proc.time() - get(".ptime", pos = "CheckExEnv")), pos = "CheckExEnv")
-> base::cat("spCopDemo", base::get(".format_ptime", pos = 'CheckExEnv')(get(".dptime", pos = "CheckExEnv")), "\n", file=base::get(".ExTimings", pos = 'CheckExEnv'), append=TRUE, sep="\t")
> cleanEx()
> nameEx("spCopPredict")
> ### * spCopPredict
>
> flush(stderr()); flush(stdout())
>
-> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: spCopPredict
> ### Title: spatial prediction based on a spatial vine copula
> ### Aliases: spCopPredict
@@ -2258,8 +2107,6 @@
>
>
>
-> base::assign(".dptime", (proc.time() - get(".ptime", pos = "CheckExEnv")), pos = "CheckExEnv")
-> base::cat("spCopPredict", base::get(".format_ptime", pos = 'CheckExEnv')(get(".dptime", pos = "CheckExEnv")), "\n", file=base::get(".ExTimings", pos = 'CheckExEnv'), append=TRUE, sep="\t")
> cleanEx()
detaching 'package:sp'
@@ -2269,7 +2116,6 @@
>
> flush(stderr()); flush(stdout())
>
-> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: spCopula-class
> ### Title: Class '"spCopula"'
> ### Aliases: spCopula-class dduCopula,matrix,spCopula-method
@@ -2316,15 +2162,12 @@
>
>
>
-> base::assign(".dptime", (proc.time() - get(".ptime", pos = "CheckExEnv")), pos = "CheckExEnv")
-> base::cat("spCopula-class", base::get(".format_ptime", pos = 'CheckExEnv')(get(".dptime", pos = "CheckExEnv")), "\n", file=base::get(".ExTimings", pos = 'CheckExEnv'), append=TRUE, sep="\t")
> cleanEx()
> nameEx("spCopula")
> ### * spCopula
>
> flush(stderr()); flush(stdout())
>
-> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: spCopula
> ### Title: Spatial Copula
> ### Aliases: spCopula
@@ -2358,15 +2201,12 @@
>
>
>
-> base::assign(".dptime", (proc.time() - get(".ptime", pos = "CheckExEnv")), pos = "CheckExEnv")
-> base::cat("spCopula", base::get(".format_ptime", pos = 'CheckExEnv')(get(".dptime", pos = "CheckExEnv")), "\n", file=base::get(".ExTimings", pos = 'CheckExEnv'), append=TRUE, sep="\t")
> cleanEx()
> nameEx("spGaussCopPredict")
> ### * spGaussCopPredict
>
> flush(stderr()); flush(stdout())
>
-> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: spGaussCopPredict
> ### Title: spatial prediction using a Gaussian Copula
[TRUNCATED]
To get the complete diff run:
svnlook diff /svnroot/spcopula -r 163
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