[spcopula-commits] r151 - in pkg: . vignettes vignettes/figures

[noreply at r-forge.r-project.org]

Author: ben_graeler
Date: 2015-10-15 11:22:36 +0200 (Thu, 15 Oct 2015)
New Revision: 151

Added:
   pkg/vignettes/
   pkg/vignettes/bib_spcopula.bib
   pkg/vignettes/figures/
   pkg/vignettes/figures/BoxPlots.pdf
   pkg/vignettes/figures/FI00351_ts.pdf
   pkg/vignettes/figures/PM10_EMEP_correlation.pdf
   pkg/vignettes/figures/can_Vine.png
   pkg/vignettes/figures/condPredCDF.pdf
   pkg/vignettes/figures/copula_densities.pdf
   pkg/vignettes/figures/correlogram.pdf
   pkg/vignettes/figures/hist_PM10.pdf
   pkg/vignettes/figures/st-vine.png
   pkg/vignettes/spcopula.Rnw
Modified:
   pkg/DESCRIPTION
Log:
- added vignette

Modified: pkg/DESCRIPTION
===================================================================
--- pkg/DESCRIPTION	2015-08-18 12:48:14 UTC (rev 150)
+++ pkg/DESCRIPTION	2015-10-15 09:22:36 UTC (rev 151)
@@ -2,7 +2,7 @@
 Type: Package
 Title: Copula Driven Spatio-Temporal Analysis
 Version: 0.2-1
-Date: 2015-08-18
+Date: 2015-10-15
 Authors at R: c(person("Benedikt", "Graeler", role = c("aut", "cre"),
                     email = "ben.graeler at uni-muenster.de"),
              person("Marius", "Appel",role = "ctb"))

Added: pkg/vignettes/bib_spcopula.bib
===================================================================
--- pkg/vignettes/bib_spcopula.bib	                        (rev 0)
+++ pkg/vignettes/bib_spcopula.bib	2015-10-15 09:22:36 UTC (rev 151)
@@ -0,0 +1,328 @@
+% This file was created with JabRef 2.10.
+% Encoding: Cp1252
+
+
+ at Manual{RCoreTeam2013,
+  Title                    = {\proglang{R}: A Language and Environment for Statistical Computing},
+
+  Address                  = {Vienna, Austria},
+  Author                   = {{\proglang{R} Core Team}},
+  Organization             = {\proglang{R} Foundation for Statistical Computing},
+  Year                     = {2013},
+
+  Url                      = {http://www.R-project.org/}
+}
+
+ at Article{Aas2009,
+  Title                    = {Pair-Copula Constructions of Multiple Dependence},
+  Author                   = {Kjersti Aas and Claudia Czado and Arnoldo Frigessi and Henrik Bakken},
+  Journal                  = {Insurance: Mathematics and Economics},
+  Year                     = {2009},
+  Pages                    = {182--198},
+  Volume                   = {44},
+
+  Doi                      = {10.1016/j.insmatheco.2007.02.001}
+}
+
+ at Article{Bardossy2011,
+  Title                    = {Interpolation of Groundwater Quality Parameters with Some Values Below the Detection Limit},
+  Author                   = {B{\'a}rdossy, A.},
+  Journal                  = {Hydrology and Earth System Sciences},
+  Year                     = {2011},
+  Number                   = {9},
+  Pages                    = {2763--2775},
+  Volume                   = {15},
+
+  Doi                      = {10.5194/hess-15-2763-2011}
+}
+
+ at Article{Bardossy2006,
+  Title                    = {Copula-Based Geostatistical Models for Groundwater Quality Parameters},
+  Author                   = {Andr{\'a}s B{\'a}rdossy},
+  Journal                  = {Water Resources Research},
+  Year                     = {2006},
+  Number                   = {11},
+  Pages                    = {W11416},
+  Volume                   = {42},
+
+  Doi                      = {10.1029/2005WR004754}
+}
+
+ at Article{Bardossy2008,
+  Title                    = {Geostatistical Interpolation Using Copulas},
+  Author                   = {Andr{\'a}s B{\'a}rdossy and Jing Li},
+  Journal                  = {Water Resources Research},
+  Year                     = {2008},
+  Number                   = {7},
+  Pages                    = {W07412},
+  Volume                   = {44},
+
+  Doi                      = {10.1029/2007WR006115},
+  Issue                    = {W07412}
+}
+
+ at Article{Bardossy2009,
+  Title                    = {Copula Based Multisite Model for Daily Precipitation Simulation},
+  Author                   = {B{\'a}rdossy, A. and Pegram, G. G. S.},
+  Journal                  = {Hydrology and Earth System Sciences},
+  Year                     = {2009},
+  Number                   = {12},
+  Pages                    = {2299--2314},
+  Volume                   = {13},
+
+  __markedentry            = {[b_grae02:]},
+  Doi                      = {10.5194/hess-13-2299-2009}
+}
+
+ at Article{Bedford2002,
+  Title                    = {Vines -- a New Graphical Model for Dependent Random Variables},
+  Author                   = {Tim Bedford and Roger M. Cooke},
+  Journal                  = {The Annals of Statistics},
+  Year                     = {2002},
+  Number                   = {4},
+  Pages                    = {1031--1068},
+  Volume                   = {30},
+
+  __markedentry            = {[b_grae02:]},
+  Doi                      = {10.1214/aos/1031689016},
+  Issue                    = {4}
+}
+
+ at Book{Cressie2011,
+  Title                    = {Statistics for Spatio-Temporal Data},
+  Author                   = {Cressie, Noel and Wikle, Christopher K},
+  Publisher                = {John Wiley \& Sons},
+  Year                     = {2011}
+}
+
+ at Article{Czado2012,
+  Title                    = {Maximum Likelihood Estimation of Mixed C-Vines with Application to Exchange Rates},
+  Author                   = {C Czado and U Schepsmeier and A Min},
+  Journal                  = {Statistical Modelling},
+  Year                     = {2012},
+  Number                   = {3},
+  Pages                    = {229--255},
+  Volume                   = {12},
+
+  __markedentry            = {[b_grae02:]},
+  Doi                      = {10.1177/1471082X1101200302}
+}
+
+ at Article{Dissmann2013,
+  Title                    = {Selecting and Estimating Regular Vine Copulae and Application to Financial Returns},
+  Author                   = {J F Dissmann and E C Brechmann and C Czado and D Kurowicka},
+  Journal                  = {Computational Statistics \& Data Analysis},
+  Year                     = {2013},
+  Number                   = {1},
+  Pages                    = {52 -- 69},
+  Volume                   = {59},
+
+  __markedentry            = {[b_grae02:]},
+  Doi                      = {10.1016/j.csda.2012.08.010}
+}
+
+ at Book{EMEP2005,
+  Title                    = {Transboundary Particulate Matter in Europe Status Report 4/2007.},
+  Author                   = {EMEP},
+  Publisher                = {Norwegian Institute for Air Research (EMEP Report 4/2007)},
+  Year                     = {2007},
+
+  Address                  = {Kjeller},
+
+  Owner                    = {b_grae02},
+  Timestamp                = {2014.02.03},
+  Url                      = {http://www.nilu.no/projects/ccc/reports/emep4-2007.pdf}
+}
+
+ at PhdThesis{Gomez-Hernandez1991,
+  Title                    = {A Stochastic Approach to the Simulation of Block Conductivity Fields Conditioned upon Data Measured at a Smaller Scale},
+  Author                   = {G{\'o}mez-Hern{\'a}ndez, J.},
+  School                   = {Stanford University},
+  Year                     = {1991},
+
+  Address                  = {Stanford, CA},
+
+  Owner                    = {b_grae02},
+  Timestamp                = {2013.05.27}
+}
+
+ at Article{Graler2014,
+  Title                    = {Modelling Skewed Spatial Random Fields Through the Spatial Vine Copula},
+  Author                   = {Benedikt Gr{\"a}ler},
+  Journal                  = {Spatial Statistics},
+  Year                     = {2014},
+  Note                     = {available online, in pess},
+
+  Doi                      = {10.1016/j.spasta.2014.01.001},
+  ISSN                     = {2211-6753}
+}
+
+ at TechReport{Graler2012,
+  Title                    = {Spatio-Temporal Analysis and Interpolation of {PM10} Measurements in {Europe}},
+  Author                   = {Benedikt Gr{\"a}ler and Lydia E. Gerharz and Edzer J. Pebesma},
+  Institution              = {ETC/ACM},
+  Year                     = {2012},
+
+  Owner                    = {b_grae02},
+  Timestamp                = {2013.04.17},
+  Url                      = {http://acm.eionet.europa.eu/reports/ETCACM_TP_2011_10_spatio-temp_AQinterpolation}
+}
+
+ at InCollection{Graler2012a,
+  Title                    = {Modelling Dependence in Space and Time with Vine Copulas},
+  Author                   = {Benedikt Gr\"aler and Edzer J. Pebesma},
+  Booktitle                = {Expanded Abstract Collection from Ninth International Geostatistics Congress, Oslo, Norway June 11 -- 15, 2012},
+  Publisher                = {International Geostatistics Congress},
+  Year                     = {2012},
+
+  Owner                    = {b_grae02},
+  Timestamp                = {2013.05.07},
+  Url                      = {http://geostats2012.nr.no/1742830.html}
+}
+
+ at Book{Joe1997,
+  Title                    = {Multivariate Models and Dependence Concepts},
+  Author                   = {H Joe},
+  Publisher                = {Chapman and Hall},
+  Year                     = {1997},
+
+  __markedentry            = {[b_grae02:]},
+  Owner                    = {b_grae02},
+  Timestamp                = {2013.04.17}
+}
+
+ at Article{Kazianka2011,
+  Title                    = {{Bayes}ian Spatial Modeling and Interpolation Using Copulas},
+  Author                   = {Hannes Kazianka and Jürgen Pilz},
+  Journal                  = {Computers \& Geosciences },
+  Year                     = {2011},
+  Number                   = {3},
+  Pages                    = {310--319},
+  Volume                   = {37},
+
+  Doi                      = {10.1016/j.cageo.2010.06.005},
+  ISSN                     = {0098-3004},
+  Keywords                 = {Copula}
+}
+
+ at Article{Kazianka2010,
+  Title                    = {Copula-Based Geostatistical Modeling of Continuous and Discrete Data Including Covariates},
+  Author                   = {Hannes Kazianka and J{\"u}rgen Pilz},
+  Journal                  = {Stochastic Environmental Research and Risk Assessment},
+  Year                     = {2010},
+  Number                   = {5},
+  Pages                    = {661--673},
+  Volume                   = {24},
+
+  __markedentry            = {[b_grae02:]},
+  Doi                      = {10.1007/s00477-009-0353-8},
+  Owner                    = {b_grae02},
+  Timestamp                = {2013.04.17}
+}
+
+ at Article{Kojadinovic2010a,
+  Title                    = {Modeling Multivariate Distributions with Continuous Margins Using the {copula} {R} Package},
+  Author                   = {Ivan Kojadinovic and Jun Yan},
+  Journal                  = {Journal of Statistical Software},
+  Year                     = {2010},
+  Number                   = {9},
+  Pages                    = {1--20},
+  Volume                   = {34},
+
+  Url                      = {http://www.jstatsoft.org/v34/i09}
+}
+
+ at Book{Nelsen2006,
+  Title                    = {An Introduction to Copulas},
+  Author                   = {Roger B. Nelsen},
+  Publisher                = {Springer-Verlag},
+  Year                     = {2006},
+
+  Address                  = {New York},
+  Edition                  = {Second},
+
+  __markedentry            = {[b_grae02:]},
+  Owner                    = {b_grae02},
+  Timestamp                = {2013.04.17}
+}
+
+ at Article{Pebesma2012,
+  Title                    = {\pkg{spacetime}: Spatio-Temporal Data in \proglang{R}},
+  Author                   = {Edzer Pebesma},
+  Journal                  = {Journal of Statistical Software},
+  Year                     = {2012},
+  Number                   = {7},
+  Pages                    = {1--30},
+  Volume                   = {51},
+
+  Url                      = {http://www.jstatsoft.org/v51/i07/}
+}
+
+ at Article{Pebesma2005,
+  Title                    = {Classes and Methods for Spatial Data in \proglang{R}},
+  Author                   = {Edzer J. Pebesma and Roger S. Bivand},
+  Journal                  = {\proglang{R} News},
+  Year                     = {2005},
+
+  Month                    = {November},
+  Number                   = {2},
+  Pages                    = {9--13},
+  Volume                   = {5},
+
+  Url                      = {http://CRAN.R-project.org/doc/Rnews/}
+}
+
+ at Manual{Schepsmeier2013,
+  Title                    = {\pkg{VineCopula}: Statistical Inference of Vine Copulas},
+  Author                   = {Ulf Schepsmeier and Jakob Stoeber and Eike Christian Brechmann},
+  Note                     = {\proglang{R}~package version 1.1-2},
+  Year                     = {2013}
+}
+
+ at Article{Sklar1959,
+  Title                    = {Fonctions de r\'epartition \'a n dimensions et leurs marges},
+  Author                   = {A. Sklar},
+  Journal                  = {Publ. Inst. Statist. Univ. Paris},
+  Year                     = {1959},
+  Pages                    = {229 -- 231},
+  Volume                   = {8},
+
+  __markedentry            = {[b_grae02:]},
+  Owner                    = {b_grae02},
+  Timestamp                = {2013.04.17}
+}
+
+ at Article{Stephenson2002,
+  Title                    = {evd: Extreme Value Distributions},
+  Author                   = {A. G. Stephenson},
+  Journal                  = {\proglang{R} News},
+  Year                     = {2002},
+
+  Month                    = {June},
+  Number                   = {2},
+  Pages                    = {31--32},
+  Volume                   = {2},
+
+  Url                      = {http://CRAN.R-project.org/doc/Rnews/}
+}
+
+ at Article{Yan2007,
+  Title                    = {Enjoy the Joy of Copulas: With a Package \pkg{copula}},
+  Author                   = {Jun Yan},
+  Journal                  = {Journal of Statistical Software},
+  Year                     = {2007},
+
+  Month                    = {10},
+  Number                   = {4},
+  Pages                    = {1--21},
+  Volume                   = {21},
+
+  Accepted                 = {2007-09-11},
+  Bibdate                  = {2007-09-11},
+  Coden                    = {JSSOBK},
+  Day                      = {8},
+  ISSN                     = {1548-7660},
+  Submitted                = {2006-12-02},
+  Url                      = {http://www.jstatsoft.org/v21/i04}
+}
+

Added: pkg/vignettes/figures/BoxPlots.pdf
===================================================================
--- pkg/vignettes/figures/BoxPlots.pdf	                        (rev 0)
+++ pkg/vignettes/figures/BoxPlots.pdf	2015-10-15 09:22:36 UTC (rev 151)
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To get the complete diff run:
    svnlook diff /svnroot/spcopula -r 151