[Soiltexture-commits] r75 - / pkg pkg/soiltexture pkg/soiltexture/R pkg/soiltexture/man

Wed Jan 25 17:49:36 CET 2012

Author: jmoeys
Date: 2012-01-25 17:49:36 +0100 (Wed, 25 Jan 2012)
New Revision: 75

Modified:
   SoilTexture_changelog.txt
   pkg/
   pkg/soiltexture/DESCRIPTION
   pkg/soiltexture/R/soiltexture.R
   pkg/soiltexture/man/TT.DJ.col.Rd
   pkg/soiltexture/man/TT.add.Rd
   pkg/soiltexture/man/TT.auto.set.Rd
   pkg/soiltexture/man/TT.axis.arrows.Rd
   pkg/soiltexture/man/TT.baseplot.Rd
   pkg/soiltexture/man/TT.blr.ps.lim.Rd
   pkg/soiltexture/man/TT.blr.tx.check.Rd
   pkg/soiltexture/man/TT.check.ps.lim.Rd
   pkg/soiltexture/man/TT.check.ps.lim.Xm.Rd
   pkg/soiltexture/man/TT.chemometrics.alr.Rd
   pkg/soiltexture/man/TT.classes.Rd
   pkg/soiltexture/man/TT.classes.tbl.Rd
   pkg/soiltexture/man/TT.col2hsv.Rd
   pkg/soiltexture/man/TT.contour.Rd
   pkg/soiltexture/man/TT.css2xy.Rd
   pkg/soiltexture/man/TT.data.test.Rd
   pkg/soiltexture/man/TT.data.test.X.Rd
   pkg/soiltexture/man/TT.dataset.Rd
   pkg/soiltexture/man/TT.deg2rad.Rd
   pkg/soiltexture/man/TT.dia2phi.Rd
   pkg/soiltexture/man/TT.edges.Rd
   pkg/soiltexture/man/TT.gen.op.set.Rd
   pkg/soiltexture/man/TT.geo.get.Rd
   pkg/soiltexture/man/TT.geo.set.Rd
   pkg/soiltexture/man/TT.get.Rd
   pkg/soiltexture/man/TT.grid.Rd
   pkg/soiltexture/man/TT.ifelse.Rd
   pkg/soiltexture/man/TT.image.Rd
   pkg/soiltexture/man/TT.iwd.Rd
   pkg/soiltexture/man/TT.kde2d.Rd
   pkg/soiltexture/man/TT.lines.Rd
   pkg/soiltexture/man/TT.locator.Rd
   pkg/soiltexture/man/TT.mahalanobis.Rd
   pkg/soiltexture/man/TT.normalise.sum.Rd
   pkg/soiltexture/man/TT.normalise.sum.X.Rd
   pkg/soiltexture/man/TT.par.op.set.Rd
   pkg/soiltexture/man/TT.phi2dia.Rd
   pkg/soiltexture/man/TT.plot.Rd
   pkg/soiltexture/man/TT.points.Rd
   pkg/soiltexture/man/TT.points.in.classes.Rd
   pkg/soiltexture/man/TT.polygon.area.Rd
   pkg/soiltexture/man/TT.polygon.centroids.Rd
   pkg/soiltexture/man/TT.set.Rd
   pkg/soiltexture/man/TT.str.Rd
   pkg/soiltexture/man/TT.switch.Rd
   pkg/soiltexture/man/TT.text.Rd
   pkg/soiltexture/man/TT.text.transf.Rd
   pkg/soiltexture/man/TT.text.transf.X.Rd
   pkg/soiltexture/man/TT.text.transf.Xm.Rd
   pkg/soiltexture/man/TT.ticks.Rd
   pkg/soiltexture/man/TT.ticks.lab.Rd
   pkg/soiltexture/man/TT.vertices.plot.Rd
   pkg/soiltexture/man/TT.vertices.tbl.Rd
   pkg/soiltexture/man/TT.xy.grid.Rd
   pkg/soiltexture/man/TT.xy2css.Rd
   pkg/soiltexture/man/soiltexture-package.Rd
   soiltexture_compile.R
Log:
Attempt to fix package dependence in the vignette (xtable)

Modified: SoilTexture_changelog.txt
===================================================================

--- SoilTexture_changelog.txt	2012-01-06 10:29:54 UTC (rev 74)
+++ SoilTexture_changelog.txt	2012-01-25 16:49:36 UTC (rev 75)
@@ -3,6 +3,10 @@
 Julien MOEYS
 -----------------------------------------------------------------------------------------
 
+o version 1.2.8 
+
+  20120125 New attempt to fix xtable package dependence in the vignette.
+
 o version 1.2.7 
 
   20120106  no visible change (fixed package dependance in vignette) + corrected TT.plot()


Property changes on: pkg
___________________________________________________________________
Modified: svn:ignore
   - soiltexture.Rcheck
soiltexture.Rcheck.zip
soiltexture_1.2.3.tar.gz
soiltexture_1.2.3_R_i486-pc-linux-gnu.tar.gz
soiltexture_1.2.4.tar.gz
soiltexture_1.2.4.zip
soiltexture_1.2.5.tar.gz
soiltexture_1.2.5.zip
soiltexture_1.2.6.tar.gz
soiltexture_1.2.6.zip
soiltexture_1.2.6_R_i486-pc-linux-gnu.tar.gz

   + soiltexture.Rcheck
soiltexture.Rcheck.zip
soiltexture_1.2.3.tar.gz
soiltexture_1.2.3_R_i486-pc-linux-gnu.tar.gz
soiltexture_1.2.4.tar.gz
soiltexture_1.2.4.zip
soiltexture_1.2.5.tar.gz
soiltexture_1.2.5.zip
soiltexture_1.2.6.tar.gz
soiltexture_1.2.6.zip
soiltexture_1.2.6_R_i486-pc-linux-gnu.tar.gz
soiltexture_1.2.8.tar.gz
soiltexture_1.2.8.zip


Modified: pkg/soiltexture/DESCRIPTION
===================================================================
--- pkg/soiltexture/DESCRIPTION	2012-01-06 10:29:54 UTC (rev 74)
+++ pkg/soiltexture/DESCRIPTION	2012-01-25 16:49:36 UTC (rev 75)
@@ -1,11 +1,11 @@
 Package: soiltexture
-Version: 1.2.7
-Date: 2012-01-06
+Version: 1.2.8
+Date: 2012-01-25
 Title: Functions for soil texture plot, classification and transformation
 Author: Julien MOEYS <jules_m78-soiltexture at yahoo.fr>, contributions from Wei Shangguan.
 Maintainer: Julien MOEYS <jules_m78-soiltexture at yahoo.fr> 
 Depends: R (>= 2.4.1), sp, MASS
-Suggests: drc, plotrix
+Suggests: drc, plotrix, xtable
 Description: "The Soil Texture Wizard" is a set of R functions designed to produce 
     texture triangles (also called texture plots, texture diagrams, texture ternary plots), 
     classify and transform soil textures data. These functions virtually allows to plot any 

Modified: pkg/soiltexture/R/soiltexture.R
===================================================================
--- pkg/soiltexture/R/soiltexture.R	2012-01-06 10:29:54 UTC (rev 74)
+++ pkg/soiltexture/R/soiltexture.R	2012-01-25 16:49:36 UTC (rev 75)
@@ -4273,10 +4273,12 @@
 ###  See also TT.vertices.plot().
 
     class.sys       = "FAO50.TT", 
-    collapse        = ", " 
+    collapse        = NULL 
 ){  #
     TT.data <- TT.get( class.sys ) 
     #
+    if( is.null(collapse) ){ collapse = ", " }
+    #
     tbl <- do.call( 
         what    = "rbind", 
         args    = lapply( 
@@ -5772,7 +5774,7 @@
 ### OUTSIDE the texture triangle (i.e. that some texture values may 
 ### be negative).
 
- collapse=", ",
+ collapse=NULL,
 ### Single character string. If PiC.type = "t" and a sample lie 
 ### on the edge of 2 texture classes, then both will be outputed 
 ### in a single character string, separated by 'collapse'. Example of 
@@ -5811,6 +5813,8 @@
     #
     TT.data <- TT.get(class.sys) 
     #
+    if( is.null(collapse) ){ collapse = ", " } 
+    #
     geo <- TT.geo.get( 
         class.sys       = class.sys, 
         blr.clock       = NULL, 

Modified: pkg/soiltexture/man/TT.DJ.col.Rd
===================================================================
--- pkg/soiltexture/man/TT.DJ.col.Rd	2012-01-06 10:29:54 UTC (rev 74)
+++ pkg/soiltexture/man/TT.DJ.col.Rd	2012-01-25 16:49:36 UTC (rev 75)
@@ -1,24 +1,52 @@
-\name{TT.DJ.col}
-\alias{TT.DJ.col}
-\title{A function to obtaine a weight average 'mix' of different colors!}
-\description{A function to obtaine a weight average 'mix' of different colors!}
-\usage{
-TT.DJ.col(cl, w, gray.l = FALSE)
-}
-\arguments{
-  \item{cl}{
-}
-  \item{w}{
-}
-  \item{gray.l}{
-}
-}
+\name{TT.DJ.col}
 
+\alias{TT.DJ.col}
 
+\title{A function to obtaine a weight average 'mix' of different colors!}
 
-\author{Julien MOEYS <jules_m78-soiltexture at yahoo.fr>}
+\description{A function to obtaine a weight average 'mix' of different colors!}
 
+\usage{
 
+TT.DJ.col(cl,
 
+w,
 
+gray.l = FALSE)
 
+}
+
+\arguments{
+
+  \item{cl}{
+
+}
+
+  \item{w}{
+
+}
+
+  \item{gray.l}{
+
+}
+
+}
+
+
+
+
+
+
+
+\author{Julien MOEYS <jules_m78-soiltexture at yahoo.fr>, contributions from Wei Shangguan.}
+
+
+
+
+
+
+
+
+
+
+

Modified: pkg/soiltexture/man/TT.add.Rd
===================================================================
--- pkg/soiltexture/man/TT.add.Rd	2012-01-06 10:29:54 UTC (rev 74)
+++ pkg/soiltexture/man/TT.add.Rd	2012-01-25 16:49:36 UTC (rev 75)
@@ -1,27 +1,60 @@
-\name{TT.add}
-\alias{TT.add}
-\title{Function to add a new default package parameters. }
-\description{Function to add a new default package parameters. Mostly used 
-to add a new texture triangle definition.}
-\usage{
-TT.add(..., par.list = "TT.par", bkp.par.list = "TT.par.bkp", par.env = TT.env)
-}
-\arguments{
-  \item{\dots}{
-}
-  \item{par.list}{
-}
-  \item{bkp.par.list}{
-}
-  \item{par.env}{
-}
-}
+\name{TT.add}
 
+\alias{TT.add}
 
+\title{Function to add a new default package parameters. }
 
-\author{Julien MOEYS <jules_m78-soiltexture at yahoo.fr>}
+\description{Function to add a new default package parameters. Mostly used 
 
+to add a new texture triangle definition.}
 
+\usage{
 
+TT.add(...,
 
+par.list = "TT.par",
 
+bkp.par.list = "TT.par.bkp",
+
+par.env = TT.env)
+
+}
+
+\arguments{
+
+  \item{\dots}{
+
+}
+
+  \item{par.list}{
+
+}
+
+  \item{bkp.par.list}{
+
+}
+
+  \item{par.env}{
+
+}
+
+}
+
+
+
+
+
+
+
+\author{Julien MOEYS <jules_m78-soiltexture at yahoo.fr>, contributions from Wei Shangguan.}
+
+
+
+
+
+
+
+
+
+
+

Modified: pkg/soiltexture/man/TT.auto.set.Rd
===================================================================
--- pkg/soiltexture/man/TT.auto.set.Rd	2012-01-06 10:29:54 UTC (rev 74)
+++ pkg/soiltexture/man/TT.auto.set.Rd	2012-01-25 16:49:36 UTC (rev 75)
@@ -1,26 +1,58 @@
-\name{TT.auto.set}
-\alias{TT.auto.set}
-\title{Internal. Retrieve and set default values for parameters (par() or not), when NULL.}
-\description{Retrieve and set default values for parameters (par() or not), when NULL.}
-\usage{
-TT.auto.set(fun = sys.function(which = -1), assign.op = TRUE, p.env = parent.frame(), set.par = TRUE)
-}
-\arguments{
-  \item{fun}{
-}
-  \item{assign.op}{
-}
-  \item{p.env}{
-}
-  \item{set.par}{
-}
-}
+\name{TT.auto.set}
 
+\alias{TT.auto.set}
 
+\title{Internal. Retrieve and set default values for parameters (par() or not), when NULL.}
 
-\author{Julien MOEYS <jules_m78-soiltexture at yahoo.fr>}
+\description{Retrieve and set default values for parameters (par() or not), when NULL.}
 
+\usage{
 
+TT.auto.set(fun = sys.function(which = -1),
 
+assign.op = TRUE,
 
+p.env = parent.frame(),
 
+set.par = TRUE)
+
+}
+
+\arguments{
+
+  \item{fun}{
+
+}
+
+  \item{assign.op}{
+
+}
+
+  \item{p.env}{
+
+}
+
+  \item{set.par}{
+
+}
+
+}
+
+
+
+
+
+
+
+\author{Julien MOEYS <jules_m78-soiltexture at yahoo.fr>, contributions from Wei Shangguan.}
+
+
+
+
+
+
+
+
+
+
+

Modified: pkg/soiltexture/man/TT.axis.arrows.Rd
===================================================================
--- pkg/soiltexture/man/TT.axis.arrows.Rd	2012-01-06 10:29:54 UTC (rev 74)
+++ pkg/soiltexture/man/TT.axis.arrows.Rd	2012-01-25 16:49:36 UTC (rev 75)
@@ -1,64 +1,172 @@
-\name{TT.axis.arrows}
-\alias{TT.axis.arrows}
-\title{Internal. Plot the axis' arrows of a texture triangle plot. }
-\description{Plot the axis' arrows of a texture triangle plot. }
-\usage{
-TT.axis.arrows(geo, css.lab = NULL, a.l = TT.get("arrows.lims"), a.h.s = TT.get("arrows.head.shift"), a.t.s = TT.get("arrows.text.shift"), a.t.s2 = TT.get("arrows.text.shift2"), a.b.s = TT.get("arrows.base.shift"), text.tol = NULL, text.sum = NULL, blr.clock = NULL, tlr.an = NULL, base.css.ps.lim = NULL, tri.sum.tst = FALSE, tri.pos.tst = FALSE, lwd.lab = NULL, arrows.lty = NULL, col.lab = NULL, font.lab = NULL, cex.lab = NULL, family.op = NULL, unit.ps = NULL, unit.tx = NULL, lang = NULL)
-}
-\arguments{
-  \item{geo}{
-}
-  \item{css.lab}{
-}
-  \item{a.l}{
-}
-  \item{a.h.s}{
-}
-  \item{a.t.s}{
-}
-  \item{a.t.s2}{
-}
-  \item{a.b.s}{
-}
-  \item{text.tol}{
-}
-  \item{text.sum}{
-}
-  \item{blr.clock}{
-}
-  \item{tlr.an}{
-}
-  \item{base.css.ps.lim}{
-}
-  \item{tri.sum.tst}{
-}
-  \item{tri.pos.tst}{
-}
-  \item{lwd.lab}{
-}
-  \item{arrows.lty}{
-}
-  \item{col.lab}{
-}
-  \item{font.lab}{
-}
-  \item{cex.lab}{
-}
-  \item{family.op}{
-}
-  \item{unit.ps}{
-}
-  \item{unit.tx}{
-}
-  \item{lang}{
-}
-}
+\name{TT.axis.arrows}
 
+\alias{TT.axis.arrows}
 
+\title{Internal. Plot the axis' arrows of a texture triangle plot. }
 
-\author{Julien MOEYS <jules_m78-soiltexture at yahoo.fr>}
+\description{Plot the axis' arrows of a texture triangle plot. }
 
+\usage{
 
+TT.axis.arrows(geo,
 
+css.lab = NULL,
 
+a.l = TT.get("arrows.lims"),
 
+a.h.s = TT.get("arrows.head.shift"),
+
+a.t.s = TT.get("arrows.text.shift"),
+
+a.t.s2 = TT.get("arrows.text.shift2"),
+
+a.b.s = TT.get("arrows.base.shift"),
+
+text.tol = NULL,
+
+text.sum = NULL,
+
+blr.clock = NULL,
+
+tlr.an = NULL,
+
+base.css.ps.lim = NULL,
+
+tri.sum.tst = FALSE,
+
+tri.pos.tst = FALSE,
+
+lwd.lab = NULL,
+
+arrows.lty = NULL,
+
+col.lab = NULL,
+
+font.lab = NULL,
+
+cex.lab = NULL,
+
+family.op = NULL,
+
+unit.ps = NULL,
+
+unit.tx = NULL,
+
+lang = NULL)
+
+}
+
+\arguments{
+
+  \item{geo}{
+
+}
+
+  \item{css.lab}{
+
+}
+
+  \item{a.l}{
+
+}
+
+  \item{a.h.s}{
+
+}
+
+  \item{a.t.s}{
+
+}
+
+  \item{a.t.s2}{
+
+}
+
+  \item{a.b.s}{
+
+}
+
+  \item{text.tol}{
+
+}
+
+  \item{text.sum}{
+
+}
+
+  \item{blr.clock}{
+
+}
+
+  \item{tlr.an}{
+
+}
+
+  \item{base.css.ps.lim}{
+
+}
+
+  \item{tri.sum.tst}{
+
+}
+
+  \item{tri.pos.tst}{
+
+}
+
+  \item{lwd.lab}{
+
+}
+
+  \item{arrows.lty}{
+
+}
+
+  \item{col.lab}{
+
+}
+
+  \item{font.lab}{
+
+}
+
+  \item{cex.lab}{
+
+}
+
+  \item{family.op}{
+
+}
+
+  \item{unit.ps}{
+
+}
+
+  \item{unit.tx}{
+
+}
+
+  \item{lang}{
+
+}
+
+}
+
+
+
+
+
+
+
+\author{Julien MOEYS <jules_m78-soiltexture at yahoo.fr>, contributions from Wei Shangguan.}
+
+
+
+
+
+
+
+
+
+
+

Modified: pkg/soiltexture/man/TT.baseplot.Rd
===================================================================
--- pkg/soiltexture/man/TT.baseplot.Rd	2012-01-06 10:29:54 UTC (rev 74)
+++ pkg/soiltexture/man/TT.baseplot.Rd	2012-01-25 16:49:36 UTC (rev 75)
@@ -1,62 +1,164 @@
-\name{TT.baseplot}
-\alias{TT.baseplot}
-\title{Internal. Create an empty plot scene for a texture triangle.}
-\description{Create an empty plot where a texture triangle can be drawn with 
-other secondary functions (frame, axis, ...). Also return the 
-'geo' parameters needed by these secondary functions.}
-\usage{
-TT.baseplot(geo = NULL, class.sys = "none", blr.clock = NULL, tlr.an = NULL, blr.tx = NULL, text.sum = NULL, base.css.ps.lim = NULL, tri.sum.tst = NULL, tri.pos.tst = NULL, text.tol = NULL, unit.ps = NULL, unit.tx = NULL, b.lim = NULL, l.lim = NULL, main = NULL, new.mar = NULL, bg = NULL, fg = NULL, col = NULL, cex.main = NULL, lang = NULL)
-}
-\arguments{
-  \item{geo}{
-}
-  \item{class.sys}{
-}
-  \item{blr.clock}{
-}
-  \item{tlr.an}{
-}
-  \item{blr.tx}{
-}
-  \item{text.sum}{
-}
-  \item{base.css.ps.lim}{
-}
-  \item{tri.sum.tst}{
-}
-  \item{tri.pos.tst}{
-}
-  \item{text.tol}{
-}
-  \item{unit.ps}{
-}
-  \item{unit.tx}{
-}
-  \item{b.lim}{
-}
-  \item{l.lim}{
-}
-  \item{main}{
-}
-  \item{new.mar}{
-}
-  \item{bg}{
-}
-  \item{fg}{
-}
-  \item{col}{
-}
-  \item{cex.main}{
-}
-  \item{lang}{
-}
-}
+\name{TT.baseplot}
 
+\alias{TT.baseplot}
 
+\title{Internal. Create an empty plot scene for a texture triangle.}
 
-\author{Julien MOEYS <jules_m78-soiltexture at yahoo.fr>}
+\description{Create an empty plot where a texture triangle can be drawn with 
 
+other secondary functions (frame, axis, ...). Also return the 
 
+'geo' parameters needed by these secondary functions.}
 
+\usage{
 
+TT.baseplot(geo = NULL,
 
+class.sys = "none",
+
+blr.clock = NULL,
+
+tlr.an = NULL,
+
+blr.tx = NULL,
+
+text.sum = NULL,
+
+base.css.ps.lim = NULL,
+
+tri.sum.tst = NULL,
+
+tri.pos.tst = NULL,
+
+text.tol = NULL,
+
+unit.ps = NULL,
+
+unit.tx = NULL,
+
+b.lim = NULL,
+
+l.lim = NULL,
+
+main = NULL,
+
+new.mar = NULL,
+
+bg = NULL,
+
+fg = NULL,
+
+col = NULL,
+
+cex.main = NULL,
+
+lang = NULL)
+
+}
+
+\arguments{
+
+  \item{geo}{
+
+}
+
+  \item{class.sys}{
+
+}
+
+  \item{blr.clock}{
+
+}
+
+  \item{tlr.an}{
+
+}
+
+  \item{blr.tx}{
+
+}
+
+  \item{text.sum}{
+
+}
+
+  \item{base.css.ps.lim}{
+
+}
+
+  \item{tri.sum.tst}{
+
+}
+
+  \item{tri.pos.tst}{
+
+}
+
+  \item{text.tol}{
+
+}
+
+  \item{unit.ps}{
+
+}
+
+  \item{unit.tx}{
+
+}
+
+  \item{b.lim}{
+
+}
+
+  \item{l.lim}{
+
+}
+
+  \item{main}{
+
+}
+
+  \item{new.mar}{
+
+}
+
+  \item{bg}{
+
+}
+
+  \item{fg}{
+
+}
+
+  \item{col}{
+
+}
+
+  \item{cex.main}{
+
+}
+
+  \item{lang}{
+
+}
+
+}
+
+
+
+
+
+
+
+\author{Julien MOEYS <jules_m78-soiltexture at yahoo.fr>, contributions from Wei Shangguan.}
+
+
+
+
+
+
+
+
+
+
+

Modified: pkg/soiltexture/man/TT.blr.ps.lim.Rd
===================================================================
--- pkg/soiltexture/man/TT.blr.ps.lim.Rd	2012-01-06 10:29:54 UTC (rev 74)
+++ pkg/soiltexture/man/TT.blr.ps.lim.Rd	2012-01-25 16:49:36 UTC (rev 75)
@@ -1,22 +1,46 @@
-\name{TT.blr.ps.lim}
-\alias{TT.blr.ps.lim}
-\title{Internal. Create a tabular version of clay silt sand particle size limits. }
-\description{Create a tabular version of clay silt sand particle size limits. }
-\usage{
-TT.blr.ps.lim(blr.tx, css.ps.lim)
-}
-\arguments{
-  \item{blr.tx}{
-}
-  \item{css.ps.lim}{
-}
-}
+\name{TT.blr.ps.lim}
 
+\alias{TT.blr.ps.lim}
 
+\title{Internal. Create a tabular version of clay silt sand particle size limits. }
 
-\author{Julien MOEYS <jules_m78-soiltexture at yahoo.fr>}
+\description{Create a tabular version of clay silt sand particle size limits. }
 
+\usage{
 
+TT.blr.ps.lim(blr.tx,
 
+css.ps.lim)
 
+}
 
+\arguments{
+
+  \item{blr.tx}{
+
+}
+
+  \item{css.ps.lim}{
+
+}
+
+}
+
+
+
+
+
+
+
+\author{Julien MOEYS <jules_m78-soiltexture at yahoo.fr>, contributions from Wei Shangguan.}
+
+
+
+
+
+
+
+
+
+
+

Modified: pkg/soiltexture/man/TT.blr.tx.check.Rd
===================================================================
--- pkg/soiltexture/man/TT.blr.tx.check.Rd	2012-01-06 10:29:54 UTC (rev 74)
+++ pkg/soiltexture/man/TT.blr.tx.check.Rd	2012-01-25 16:49:36 UTC (rev 75)
@@ -1,23 +1,48 @@
-\name{TT.blr.tx.check}
-\alias{TT.blr.tx.check}
-\title{Internal. Check the consistency between blr.tx and css.names. }
-\description{Check the consistency between blr.tx and css.names. All values 
-in blr.tx should be found in css.names and vice-versa.}
-\usage{
-TT.blr.tx.check(blr.tx, css.names)
-}
-\arguments{
-  \item{blr.tx}{
-}
-  \item{css.names}{
-}
-}
+\name{TT.blr.tx.check}
 
+\alias{TT.blr.tx.check}
 
+\title{Internal. Check the consistency between blr.tx and css.names. }
 
-\author{Julien MOEYS <jules_m78-soiltexture at yahoo.fr>}
+\description{Check the consistency between blr.tx and css.names. All values 
 
+in blr.tx should be found in css.names and vice-versa.}
 
+\usage{
 
+TT.blr.tx.check(blr.tx,
 
+css.names)
 
+}
+
+\arguments{
+
+  \item{blr.tx}{
+
+}
+
+  \item{css.names}{
+
+}
+
+}
+
+
+
+
+
+
+
+\author{Julien MOEYS <jules_m78-soiltexture at yahoo.fr>, contributions from Wei Shangguan.}
+
+
+
+
+
+
+
+
+
+
+

Modified: pkg/soiltexture/man/TT.check.ps.lim.Rd
===================================================================
--- pkg/soiltexture/man/TT.check.ps.lim.Rd	2012-01-06 10:29:54 UTC (rev 74)
+++ pkg/soiltexture/man/TT.check.ps.lim.Rd	2012-01-25 16:49:36 UTC (rev 75)
@@ -1,24 +1,54 @@
-\name{TT.check.ps.lim}
-\alias{TT.check.ps.lim}
-\title{Internal. Check the consistency between 'base.ps.lim' and 'dat.ps.lim'. }
-\description{Check the consistency between 'base.ps.lim' and 'dat.ps.lim'. 
-5 tests performed.}
-\usage{
-TT.check.ps.lim(base.ps.lim, dat.ps.lim, ps.lim.length = c(4, 4))
-}
-\arguments{
-  \item{base.ps.lim}{
-}
-  \item{dat.ps.lim}{
-}
-  \item{ps.lim.length}{vector of 2 integers. Number of particle size classes + 1. c(base,dat)}
-}
+\name{TT.check.ps.lim}
 
+\alias{TT.check.ps.lim}
 
+\title{Internal. Check the consistency between 'base.ps.lim' and 'dat.ps.lim'. }
 
-\author{Julien MOEYS <jules_m78-soiltexture at yahoo.fr>}
+\description{Check the consistency between 'base.ps.lim' and 'dat.ps.lim'. 
 
+5 tests performed.}
 
+\usage{
 
+TT.check.ps.lim(base.ps.lim,
 
+dat.ps.lim,
 
+ps.lim.length = c(4,
+
+4))
+
+}
+
+\arguments{
+
+  \item{base.ps.lim}{
+
+}
+
+  \item{dat.ps.lim}{
+
+}
+
+  \item{ps.lim.length}{vector of 2 integers. Number of particle size classes + 1. c(base,dat)}
+
+}
+
+
+
+
+
+
+
+\author{Julien MOEYS <jules_m78-soiltexture at yahoo.fr>, contributions from Wei Shangguan.}
+
+
+
+
+
+
+
+
+
+
+

Modified: pkg/soiltexture/man/TT.check.ps.lim.Xm.Rd
===================================================================
--- pkg/soiltexture/man/TT.check.ps.lim.Xm.Rd	2012-01-06 10:29:54 UTC (rev 74)
+++ pkg/soiltexture/man/TT.check.ps.lim.Xm.Rd	2012-01-25 16:49:36 UTC (rev 75)
@@ -1,25 +1,56 @@
-\name{TT.check.ps.lim.Xm}
-\alias{TT.check.ps.lim.Xm}
-\title{Internal. Check the consistency between 'base.ps.lim' and 'dat.ps.lim'. }
-\description{Check the consistency between 'base.ps.lim' and 'dat.ps.lim'. 
-4 tests performed.}
-\usage{
-TT.check.ps.lim.Xm(base.ps.lim, dat.ps.lim, ps.lim.length = c(4, 4))
-}
-\arguments{
-  \item{base.ps.lim}{
-}
-  \item{dat.ps.lim}{
-}
-  \item{ps.lim.length}{vector of 2 integers. Number of particle size classes + 1. c(base,dat)}
-}
+\name{TT.check.ps.lim.Xm}
 
+\alias{TT.check.ps.lim.Xm}
 
+\title{Internal. Check the consistency between 'base.ps.lim' and 'dat.ps.lim'. }
 
-\author{Wei Shangguan
-Julien MOEYS <jules_m78-soiltexture at yahoo.fr>}
+\description{Check the consistency between 'base.ps.lim' and 'dat.ps.lim'. 
 
+4 tests performed.}
 
+\usage{
 
+TT.check.ps.lim.Xm(base.ps.lim,
 
+dat.ps.lim,
 
+ps.lim.length = c(4,
+
+4))
+
+}
+
+\arguments{
+
+  \item{base.ps.lim}{
+
+}
+
+  \item{dat.ps.lim}{
+
+}
+
+  \item{ps.lim.length}{vector of 2 integers. Number of particle size classes + 1. c(base,dat)}
+
+}
+
+
+
+
+
+
+
+\author{Wei Shangguan
+
+Julien MOEYS <jules_m78-soiltexture at yahoo.fr>, contributions from Wei Shangguan.}
+
+
+
+
+
+
+
+
+
+
+

Modified: pkg/soiltexture/man/TT.chemometrics.alr.Rd
===================================================================
--- pkg/soiltexture/man/TT.chemometrics.alr.Rd	2012-01-06 10:29:54 UTC (rev 74)
+++ pkg/soiltexture/man/TT.chemometrics.alr.Rd	2012-01-25 16:49:36 UTC (rev 75)
@@ -1,34 +1,72 @@
-\name{TT.chemometrics.alr}
-\alias{TT.chemometrics.alr}
-\title{Compute the additive log-ratio transformation of compositional data.}
-\description{Function that compute the additive 
-log-ratio transformation of compositional data (here texture 
-data). This a a copy-paste-and-rename of the alr function provided 
-by the package chemometrics: P. Filzmoser and K. Varmuza (2008). 
-chemometrics: Multivariate Statistical Analysis in Chemometrics. 
-R package version 0.4.
-The function has been modified so it returns NA when a value 
-is below or equal to zero (this happens when using a regular 
-grid of texture data, for practical reasons).
-The function has also been modified so it uses column name
-rather than column index.}
-\usage{
-TT.chemometrics.alr(X, divisorvar, css.names)
-}
-\arguments{
-  \item{X}{
-}
-  \item{divisorvar}{
-}
-  \item{css.names}{
-}
-}
+\name{TT.chemometrics.alr}
 
+\alias{TT.chemometrics.alr}
 
+\title{Compute the additive log-ratio transformation of compositional data.}
 
-\author{Julien MOEYS <jules_m78-soiltexture at yahoo.fr>}
+\description{Function that compute the additive 
 
+log-ratio transformation of compositional data (here texture 
 
+data). This a a copy-paste-and-rename of the alr function provided 
 
+by the package chemometrics: P. Filzmoser and K. Varmuza (2008). 
 
+chemometrics: Multivariate Statistical Analysis in Chemometrics. 
 
+R package version 0.4.
+
+The function has been modified so it returns NA when a value 
+
+is below or equal to zero (this happens when using a regular 
+
+grid of texture data, for practical reasons).
+
+The function has also been modified so it uses column name
+
+rather than column index.}
+
+\usage{
+
+TT.chemometrics.alr(X,
+
+divisorvar,
+
+css.names)
+
+}
+
+\arguments{
+
+  \item{X}{
+
+}
+
+  \item{divisorvar}{
+
+}
+
+  \item{css.names}{
+
+}
+
+}
+
+
+
+
+
+
+
+\author{Julien MOEYS <jules_m78-soiltexture at yahoo.fr>, contributions from Wei Shangguan.}
+
+
+
+
+
+
+
+
+
+
+

Modified: pkg/soiltexture/man/TT.classes.Rd
===================================================================
--- pkg/soiltexture/man/TT.classes.Rd	2012-01-06 10:29:54 UTC (rev 74)
+++ pkg/soiltexture/man/TT.classes.Rd	2012-01-25 16:49:36 UTC (rev 75)
@@ -1,75 +1,202 @@
-\name{TT.classes}
-\alias{TT.classes}
-\title{Plot the texture classes polygons in a texture triangle plot.}
-\description{Plot the texture classes ploygons in an existing texture 
-triangle plot. Draw the polygons and the labels inside each 
-polygons.}
-\usage{
-TT.classes(geo, class.sys, tri.css.ps.lim = NULL, css.transf = NULL, text.transf.fun = NULL, trsf.add.opt1 = NULL, trsf.add.opt2 = NULL, text.tol = NULL, text.sum = NULL, base.css.ps.lim = NULL, blr.tx = NULL, blr.clock = NULL, tri.sum.tst = NULL, tri.pos.tst = NULL, bg = NULL, class.lab.col = NULL, class.p.bg.col = NULL, class.p.bg.hue = NULL, class.line.col = NULL, class.lty = NULL, class.lab.show = NULL, cex.lab = NULL, font.lab = NULL, family.op = NULL, lwd.axis = NULL, col.axis = NULL, new.centroid = TRUE)
-}
-\arguments{
-  \item{geo}{
-}
-  \item{class.sys}{
-}
-  \item{tri.css.ps.lim}{
-}
-  \item{css.transf}{
-}
-  \item{text.transf.fun}{
-}
-  \item{trsf.add.opt1}{
-}
-  \item{trsf.add.opt2}{
-}
-  \item{text.tol}{
-}
-  \item{text.sum}{
-}
-  \item{base.css.ps.lim}{
-}
-  \item{blr.tx}{
-}
-  \item{blr.clock}{
-}
-  \item{tri.sum.tst}{
-}
-  \item{tri.pos.tst}{
-}
-  \item{bg}{
-}
-  \item{class.lab.col}{
-}
-  \item{class.p.bg.col}{
-}
-  \item{class.p.bg.hue}{
-}
-  \item{class.line.col}{
-}
-  \item{class.lty}{
-}
-  \item{class.lab.show}{
-}
-  \item{cex.lab}{
-}
-  \item{font.lab}{
-}
-  \item{family.op}{
-}
-  \item{lwd.axis}{
-}
-  \item{col.axis}{
-}
-  \item{new.centroid}{Single logical. If TRUE (default) the new method (Paul Bourke) 
-is used to calculate the centroid. If FALSE the centroid is 
-taken as the mean x and y coordinates of the vertices.}
-}
+\name{TT.classes}
 
+\alias{TT.classes}
 
+\title{Plot the texture classes polygons in a texture triangle plot.}
 
-\author{Julien MOEYS <jules_m78-soiltexture at yahoo.fr>}
+\description{Plot the texture classes ploygons in an existing texture 
 
+triangle plot. Draw the polygons and the labels inside each 
 
+polygons.}
 
+\usage{
 
+TT.classes(geo,
 
+class.sys,
+
+tri.css.ps.lim = NULL,
+
+css.transf = NULL,
+
+text.transf.fun = NULL,
+
+trsf.add.opt1 = NULL,
+
+trsf.add.opt2 = NULL,
+
+text.tol = NULL,
+
+text.sum = NULL,
+
+base.css.ps.lim = NULL,
+
+blr.tx = NULL,
+
+blr.clock = NULL,
+
+tri.sum.tst = NULL,
+
+tri.pos.tst = NULL,
+
+bg = NULL,
+
+class.lab.col = NULL,
+
+class.p.bg.col = NULL,
+
+class.p.bg.hue = NULL,
+
+class.line.col = NULL,
+
+class.lty = NULL,
+
+class.lab.show = NULL,
+
+cex.lab = NULL,
+
+font.lab = NULL,
+
+family.op = NULL,
+
+lwd.axis = NULL,
+
+col.axis = NULL,
+
+new.centroid = TRUE)
+
+}
+
+\arguments{
+
+  \item{geo}{
+
+}
+
+  \item{class.sys}{
+
+}
+
+  \item{tri.css.ps.lim}{
+
+}
+
+  \item{css.transf}{
+
+}
+
+  \item{text.transf.fun}{
+
+}
+
+  \item{trsf.add.opt1}{
+
+}
+
+  \item{trsf.add.opt2}{
+
+}
+
+  \item{text.tol}{
+
+}
+
+  \item{text.sum}{
+
+}
+
+  \item{base.css.ps.lim}{
+
+}
+
+  \item{blr.tx}{
+
+}
+
+  \item{blr.clock}{
+
+}
+
+  \item{tri.sum.tst}{
+
+}
+
+  \item{tri.pos.tst}{
+
+}
+
+  \item{bg}{
+
+}
+
+  \item{class.lab.col}{
+
+}
+
+  \item{class.p.bg.col}{
+
+}
+
+  \item{class.p.bg.hue}{
+
+}
+
+  \item{class.line.col}{
+
+}
+
+  \item{class.lty}{
+
+}
+
+  \item{class.lab.show}{
+
+}
+
+  \item{cex.lab}{
+
+}
+
+  \item{font.lab}{
+
+}
+
+  \item{family.op}{
+
+}
+
+  \item{lwd.axis}{
+
+}
+
+  \item{col.axis}{
+
+}
+
+  \item{new.centroid}{Single logical. If TRUE (default) the new method (Paul Bourke) 
+
+is used to calculate the centroid. If FALSE the centroid is 
+
+taken as the mean x and y coordinates of the vertices.}
+
+}
+
+
+
+
+
+
+
+\author{Julien MOEYS <jules_m78-soiltexture at yahoo.fr>, contributions from Wei Shangguan.}
+
+
+
+
+
+
+
+
+
+
+

Modified: pkg/soiltexture/man/TT.classes.tbl.Rd
===================================================================
--- pkg/soiltexture/man/TT.classes.tbl.Rd	2012-01-06 10:29:54 UTC (rev 74)
+++ pkg/soiltexture/man/TT.classes.tbl.Rd	2012-01-25 16:49:36 UTC (rev 75)
@@ -1,26 +1,54 @@
-\name{TT.classes.tbl}
-\alias{TT.classes.tbl}
-\title{Returns the table of classes of a texture classification system.}
-\description{Returns the table of classes of a texture classification system. 
-Returns the classes abbreviations, names and the vertices numbers 
-that defines each class. Use TT.vertices.tbl() to retrieve the 
-clay silt sand coordinates of the triangle classes vertices. 
- See also TT.vertices.plot().}
-\usage{
-TT.classes.tbl(class.sys = "FAO50.TT", collapse = ", ")
-}
-\arguments{
-  \item{class.sys}{
-}
-  \item{collapse}{
-}
-}
+\name{TT.classes.tbl}
 
+\alias{TT.classes.tbl}
 
+\title{Returns the table of classes of a texture classification system.}
 
-\author{Julien MOEYS <jules_m78-soiltexture at yahoo.fr>}
+\description{Returns the table of classes of a texture classification system. 
 
+Returns the classes abbreviations, names and the vertices numbers 
 
+that defines each class. Use TT.vertices.tbl() to retrieve the 
 
+clay silt sand coordinates of the triangle classes vertices. 
 
+See also TT.vertices.plot().}
 
+\usage{
+
+TT.classes.tbl(class.sys = "FAO50.TT",
+
+collapse = NULL)
+
+}
+
+\arguments{
+
+  \item{class.sys}{
+
+}
+
+  \item{collapse}{
+
+}
+
+}
+
+
+
+
+
+
+
+\author{Julien MOEYS <jules_m78-soiltexture at yahoo.fr>, contributions from Wei Shangguan.}
+
+
+
+
+
+
+
+
+
+
+

Modified: pkg/soiltexture/man/TT.col2hsv.Rd
===================================================================
--- pkg/soiltexture/man/TT.col2hsv.Rd	2012-01-06 10:29:54 UTC (rev 74)
+++ pkg/soiltexture/man/TT.col2hsv.Rd	2012-01-25 16:49:36 UTC (rev 75)
@@ -1,20 +1,40 @@
-\name{TT.col2hsv}
-\alias{TT.col2hsv}
-\title{Convert any colors to hsv. }
-\description{Convert any colors to hsv. Wrapper around rgb2hsv() and col2rgb(). }
-\usage{
-TT.col2hsv(col)
-}
-\arguments{
-  \item{col}{
-}
-}
+\name{TT.col2hsv}
 
+\alias{TT.col2hsv}
 
+\title{Convert any colors to hsv. }
 
-\author{Julien MOEYS <jules_m78-soiltexture at yahoo.fr>}
+\description{Convert any colors to hsv. Wrapper around rgb2hsv() and col2rgb(). }
 
+\usage{
 
+TT.col2hsv(col)
 
+}
 
+\arguments{
 
+  \item{col}{
+
+}
+
+}
+
+
+
+
+
+
+
+\author{Julien MOEYS <jules_m78-soiltexture at yahoo.fr>, contributions from Wei Shangguan.}
+
+
+
+
+
+
+
+
+
+
+

Modified: pkg/soiltexture/man/TT.contour.Rd
===================================================================
--- pkg/soiltexture/man/TT.contour.Rd	2012-01-06 10:29:54 UTC (rev 74)
+++ pkg/soiltexture/man/TT.contour.Rd	2012-01-25 16:49:36 UTC (rev 75)
@@ -1,93 +1,256 @@
-\name{TT.contour}
-\alias{TT.contour}
-\title{Wrapper for the contour() function adapted to texture triangles.}
-\description{A wrapper for the contour() function 
-adapted to texture triangles (plot preparation).
-designed to plot the results of TT.mahalanobis() or 
-TT.kde2d(), before or after plot.}
-\usage{
-TT.contour(geo, x, add = FALSE, tri.sum.tst = NULL, tri.pos.tst = NULL, text.tol = NULL, unit.ps = NULL, unit.tx = NULL, b.lim = NULL, l.lim = NULL, main = NULL, new.mar = NULL, bg = NULL, fg = NULL, col = NULL, cex.main = NULL, lang = NULL, nlevels = 10, levels = NA, labels = NULL, xlim = NA, ylim = NA, zlim = NA, labcex = 1, drawlabels = TRUE, method = "flattest", axes = TRUE, frame.plot = NA, lty = NA, lwd = NA, blr.clock = NULL, tlr.an = NULL, blr.tx = NULL, text.sum = NULL, base.css.ps.lim = NULL, ...)
-}
-\arguments{
-  \item{geo}{
-}
-  \item{x}{
-}
-  \item{add}{
-}
-  \item{tri.sum.tst}{
-}
-  \item{tri.pos.tst}{
-}
-  \item{text.tol}{
-}
-  \item{unit.ps}{
-}
-  \item{unit.tx}{
-}
-  \item{b.lim}{
-}
-  \item{l.lim}{
-}
-  \item{main}{
-}
-  \item{new.mar}{
-}
-  \item{bg}{
-}
-  \item{fg}{
-}
-  \item{col}{
-}
-  \item{cex.main}{
-}
-  \item{lang}{
-}
-  \item{nlevels}{
-}
-  \item{levels}{
-}
-  \item{labels}{
-}
-  \item{xlim}{
-}
-  \item{ylim}{
-}
-  \item{zlim}{
-}
-  \item{labcex}{
-}
-  \item{drawlabels}{
-}
-  \item{method}{
-}
-  \item{axes}{
-}
-  \item{frame.plot}{
-}
-  \item{lty}{
-}
-  \item{lwd}{
-}
-  \item{blr.clock}{
-}
-  \item{tlr.an}{
-}
-  \item{blr.tx}{
-}
-  \item{text.sum}{
-}
-  \item{base.css.ps.lim}{
-}
-  \item{\dots}{
-}
-}
+\name{TT.contour}
 
+\alias{TT.contour}
 
+\title{Wrapper for the contour() function adapted to texture triangles.}
 
-\author{Julien MOEYS <jules_m78-soiltexture at yahoo.fr>}
+\description{A wrapper for the contour() function 
 
+adapted to texture triangles (plot preparation).
 
+designed to plot the results of TT.mahalanobis() or 
 
+TT.kde2d(), before or after plot.}
 
+\usage{
 
+TT.contour(geo,
+
+x,
+
+add = FALSE,
+
+tri.sum.tst = NULL,
+
+tri.pos.tst = NULL,
+
+text.tol = NULL,
+
+unit.ps = NULL,
+
+unit.tx = NULL,
+
+b.lim = NULL,
+
+l.lim = NULL,
+
+main = NULL,
+
+new.mar = NULL,
+
+bg = NULL,
+
+fg = NULL,
+
+col = NULL,
+
+cex.main = NULL,
+
+lang = NULL,
+
+nlevels = 10,
+
+levels = NA,
+
+labels = NULL,
+
+xlim = NA,
+
+ylim = NA,
+
+zlim = NA,
+
+labcex = 1,
+
+drawlabels = TRUE,
+
+method = "flattest",
+
+axes = TRUE,
+
+frame.plot = NA,
+
+lty = NA,
+
+lwd = NA,
+
+blr.clock = NULL,
+
+tlr.an = NULL,
+
+blr.tx = NULL,
+
+text.sum = NULL,
+
+base.css.ps.lim = NULL,
+
+...)
+
+}
+
+\arguments{
+
+  \item{geo}{
+
+}
+
+  \item{x}{
+
+}
+
+  \item{add}{
+
+}
+
+  \item{tri.sum.tst}{
+
+}
+
+  \item{tri.pos.tst}{
+
+}
+
+  \item{text.tol}{
+
+}
+
+  \item{unit.ps}{
+
+}
+
+  \item{unit.tx}{
+
+}
+
+  \item{b.lim}{
+
+}
+
+  \item{l.lim}{
+
+}
+
+  \item{main}{
+
+}
+
+  \item{new.mar}{
+
+}
+
+  \item{bg}{
+
+}
+
+  \item{fg}{
+
+}
+
+  \item{col}{
+
+}
+
+  \item{cex.main}{
+
+}
+
+  \item{lang}{
+
+}
+
+  \item{nlevels}{
+
+}
+
+  \item{levels}{
+
+}
+
+  \item{labels}{
+
+}
+
+  \item{xlim}{
+
+}
+
+  \item{ylim}{
+
+}
+
+  \item{zlim}{
+
+}
+
+  \item{labcex}{
+
+}
+
+  \item{drawlabels}{
+
+}
+
+  \item{method}{
+
+}
+
+  \item{axes}{
+
+}
+
+  \item{frame.plot}{
+
+}
+
+  \item{lty}{
+
+}
+
+  \item{lwd}{
+
+}
+
+  \item{blr.clock}{
+
+}
+
+  \item{tlr.an}{
+
+}
+
+  \item{blr.tx}{
+
+}
+
+  \item{text.sum}{
+
+}
+
+  \item{base.css.ps.lim}{
+
+}
+
+  \item{\dots}{
+
+}
+
+}
+
+
+
+
+
+
+
+\author{Julien MOEYS <jules_m78-soiltexture at yahoo.fr>, contributions from Wei Shangguan.}
+
+
+
+
+
+
+
+
+
+
+

Modified: pkg/soiltexture/man/TT.css2xy.Rd
===================================================================
--- pkg/soiltexture/man/TT.css2xy.Rd	2012-01-06 10:29:54 UTC (rev 74)
+++ pkg/soiltexture/man/TT.css2xy.Rd	2012-01-25 16:49:36 UTC (rev 75)
@@ -1,37 +1,90 @@
-\name{TT.css2xy}
-\alias{TT.css2xy}
-\title{Converts texture data (3 classes) into x-y coordinates. }
-\description{Converts texture data (3 classes) into x-y coordinates. This 
-function is the 'heart' of most soiltexture plot functions.}
-\usage{
-TT.css2xy(tri.data, geo, css.names = NULL, text.tol = NULL, tri.sum.tst = NULL, tri.pos.tst = NULL, set.par = FALSE, text.sum = NULL, blr.clock = NULL)
-}
-\arguments{
-  \item{tri.data}{
-}
-  \item{geo}{
-}
-  \item{css.names}{
-}
-  \item{text.tol}{
-}
-  \item{tri.sum.tst}{
-}
-  \item{tri.pos.tst}{
-}
-  \item{set.par}{
-}
-  \item{text.sum}{
-}
-  \item{blr.clock}{
-}
-}
+\name{TT.css2xy}
 
+\alias{TT.css2xy}
 
+\title{Converts texture data (3 classes) into x-y coordinates. }
 
-\author{Julien MOEYS <jules_m78-soiltexture at yahoo.fr>}
+\description{Converts texture data (3 classes) into x-y coordinates. This 
 
+function is the 'heart' of most soiltexture plot functions.}
 
+\usage{
 
+TT.css2xy(tri.data,
 
+geo,
 
+css.names = NULL,
+
+text.tol = NULL,
+
+tri.sum.tst = NULL,
+
+tri.pos.tst = NULL,
+
+set.par = FALSE,
+
+text.sum = NULL,
+
+blr.clock = NULL)
+
+}
+
+\arguments{
+
+  \item{tri.data}{
+
+}
+
+  \item{geo}{
+
+}
+
+  \item{css.names}{
+
+}
+
+  \item{text.tol}{
+
+}
+
+  \item{tri.sum.tst}{
+
+}
+
+  \item{tri.pos.tst}{
+
+}
+
+  \item{set.par}{
+
+}
+
+  \item{text.sum}{
+
+}
+
+  \item{blr.clock}{
+
+}
+
+}
+
+
+
+
+
+
+
+\author{Julien MOEYS <jules_m78-soiltexture at yahoo.fr>, contributions from Wei Shangguan.}
+
+
+
+
+
+
+
+
+
+
+

Modified: pkg/soiltexture/man/TT.data.test.Rd
===================================================================
--- pkg/soiltexture/man/TT.data.test.Rd	2012-01-06 10:29:54 UTC (rev 74)
+++ pkg/soiltexture/man/TT.data.test.Rd	2012-01-25 16:49:36 UTC (rev 75)
@@ -1,36 +1,82 @@
-\name{TT.data.test}
-\alias{TT.data.test}
-\title{Test the validity of some soil texture data table (3 particle size classes). }
-\description{Test the validity of some soil texture data table. (1) Test that 
-it is a data.frame or matrix, (2) Test that column names contains 
-'css.names', (3) Test that there are no missing values, (4) that 
-all values are >= 0, (5) That the sum of the 3 particle size classes 
-is >= 'text.sum'*(1-'text.tol') or <= 'text.sum'*(1+'text.tol'). 
-'tri.data' may contain other variables than the 3 textuer classes 
-(ignored).}
-\usage{
-TT.data.test(tri.data, css.names = NULL, text.sum = NULL, text.tol = NULL, tri.sum.tst = NULL, tri.pos.tst = NULL)
-}
-\arguments{
-  \item{tri.data}{
-}
-  \item{css.names}{
-}
-  \item{text.sum}{
-}
-  \item{text.tol}{
-}
[TRUNCATED]

To get the complete diff run:
    svnlook diff /svnroot/soiltexture -r 75
