[Soiltexture-commits] r73 - / pkg/soiltexture pkg/soiltexture/inst/doc
noreply at r-forge.r-project.org
noreply at r-forge.r-project.org
Fri Jan 6 11:02:28 CET 2012
Author: jmoeys
Date: 2012-01-06 11:02:28 +0100 (Fri, 06 Jan 2012)
New Revision: 73
Modified:
SoilTexture_changelog.txt
pkg/soiltexture/DESCRIPTION
pkg/soiltexture/inst/doc/soiltexture_vignette.Rnw
soiltexture_compile.R
Log:
Fixed package dependance in the vignette
Modified: SoilTexture_changelog.txt
===================================================================
--- SoilTexture_changelog.txt 2011-11-29 19:01:50 UTC (rev 72)
+++ SoilTexture_changelog.txt 2012-01-06 10:02:28 UTC (rev 73)
@@ -3,29 +3,37 @@
Julien MOEYS
-----------------------------------------------------------------------------------------
-20111112 Added the German (GDR) texture triangle for forest soils:
+o version 1.2.7
+
+ 20120106 no visible change (fixed package dependance in vignette)
+
+o version 1.2.6
+
+ 20111112 Added the German (GDR) texture triangle for forest soils:
"Standortserkundungsanweisung SEA 1974 (DE)"
-20111109 New attempt to fix problems while loading the Polish texture triangle
+o older versions
+
+ 20111109 New attempt to fix problems while loading the Polish texture triangle
under Mac/Darwin and freeBSD.
-20111101 Fixed a potential infinite loop problem in the texture transformation
+ 20111101 Fixed a potential infinite loop problem in the texture transformation
functions based on "drc"
-20111101 Improved handling / loading of the Polish triangle (is not working under
+ 20111101 Improved handling / loading of the Polish triangle (is not working under
Mac). Added the polih triangle to the vignette.
-20100610 New function TT.polygon.centroids() used for a smater calculation
+ 20100610 New function TT.polygon.centroids() used for a smater calculation
of the texture class centroid for better placement of the texture
classes labels (used by TT.classes(), itself used by TT.plot()).
-20100607 Added the Romanian texture triangle to the list of pre-defined texture
+ 20100607 Added the Romanian texture triangle to the list of pre-defined texture
triangles, and the Romanian language to the list of possible languages
for the texture triangle title and axis labels. many thanks to
Rosca Bogdan (Romanian Academy, Iasi Branch, Geography team) for providing
the code and translation.
-20100513 Accuracy problems detected in TT.points.in.classes() for texture data
+ 20100513 Accuracy problems detected in TT.points.in.classes() for texture data
located right on the boundary of the triangle (or some texture classes),
with some digits after the decimal: due to non-exact trigonometric
calculations (around 1E-15), these points may not be classified
@@ -39,104 +47,104 @@
No fix are planned in the close future to fix this error.
Thanks to Wei Shangguan (see below) for pointing this 'bug'.
-20100513 Added the ISSS (not to be confused with the 'Australian ISSS')
+ 20100513 Added the ISSS (not to be confused with the 'Australian ISSS')
texture triangle to the
list of pre-defined texture triangles. Many thanks to Wei Shangguan,
PhD from the School of geography of Beijing normal university
for providing the code of the triangle.
-20100416 Added the Canadian texture triangle to the list of pre-defined
+ 20100416 Added the Canadian texture triangle to the list of pre-defined
texture triangles.
-20100409 Created an r-forge page for the package and uploaded it to SCM
+ 20100409 Created an r-forge page for the package and uploaded it to SCM
http://r-forge.r-project.org/scm/?group_id=740
-20100409 Finished documenting the function TT.plot with inlinedocs. Package
+ 20100409 Finished documenting the function TT.plot with inlinedocs. Package
successfully compiled.
-20091221 The parameter 'fg' is now defunct, and replaced by 'col' that accepts
+ 20091221 The parameter 'fg' is now defunct, and replaced by 'col' that accepts
several values (while fg only accepts one). 'fg' still exists as an
option, but shouldn't produce any effect.
-20091119 Simplified some redundant code in TT.css2xy(), the function that
+ 20091119 Simplified some redundant code in TT.css2xy(), the function that
transforms clay silt sand data into x-y coordinates.
-20091118 Corrected a bug in the function TT.normalise.sum() (that couldn't
+ 20091118 Corrected a bug in the function TT.normalise.sum() (that couldn't
handle data.frames)
-20091014 Added the Belgian soil texture triangle to the list of pre-defined
+ 20091014 Added the Belgian soil texture triangle to the list of pre-defined
texture triangles (now 8).
-20091013 The TT.mahalanobis() function can now compute a grid of the Mahalanobis
+ 20091013 The TT.mahalanobis() function can now compute a grid of the Mahalanobis
distance on log-ratio trasnformation of soil texture data. New option
alr, default = FALSE, can be set to TRUE for alr transformation.
-20091013 Added TT.chemometrics.alr(), for additive log-ratio trasnformation of
+ 20091013 Added TT.chemometrics.alr(), for additive log-ratio trasnformation of
soil texture data. This is a copy of the alr() function in the chemometrics
package, with minor modifications for soil texture data. Used internally
in TT.mahalanobis().
-20091011 Added TT.normalise.sum(), that normalise the sum of the 3 texture classes
+ 20091011 Added TT.normalise.sum(), that normalise the sum of the 3 texture classes
to text.sum (100%).
-20091011 The options 'pow' and 'q.max.dist' are now set to 0.5 and 50 respectively.
+ 20091011 The options 'pow' and 'q.max.dist' are now set to 0.5 and 50 respectively.
This is a stronger smoothing than the previous values.
-20091011 TT.iwd() has now a 'q.max.dist' option user to determin 'max.dist' if this
+ 20091011 TT.iwd() has now a 'q.max.dist' option user to determin 'max.dist' if this
last is set to NULL. max.dist is the maximum euclidian distance, between
a grid point and a data point. If the distance between the grid point and
the data point is higher than max.dist, this point is not used to calculate
the iwd value. max.dist default value is
quantile( x = euclidian.distances, probs = q.max.dist )
-20091011 The option value 'z.type = "map"' is now deprecated in TT.plot(). Replaced
+ 20091011 The option value 'z.type = "map"' is now deprecated in TT.plot(). Replaced
by TT.iwd() and TT.image(), called outside TT.plot().
-20091011 TT.as.image() internal function deprecated. now inside TT.iwd()
+ 20091011 TT.as.image() internal function deprecated. now inside TT.iwd()
-20091011 TT.image.shade() internal function deprecated. now inside TT.iwd()
+ 20091011 TT.image.shade() internal function deprecated. now inside TT.iwd()
-20091011 TT.iwd.image() renamed to TT.iwd(). The function now output a list with
+ 20091011 TT.iwd.image() renamed to TT.iwd(). The function now output a list with
a x y grid and z value matrix, ready to be plotted by TT.image(). The
function is not plotting the image any more.
-20091011 TT.iwd() internal function is deprecated. The name will be attributed to
+ 20091011 TT.iwd() internal function is deprecated. The name will be attributed to
TT.iwd.image()
-20091010 TT.baseplot() now has a geo option.
+ 20091010 TT.baseplot() now has a geo option.
-20091010 TT.kde2d() function created. Wrapper for MASS function kde2d(), but
+ 20091010 TT.kde2d() function created. Wrapper for MASS function kde2d(), but
customized for texture triangles. Results can be displayed by
TT.contour(), TT.image(), contour() or image().
-20091010 TT.image() function created. Wrapped for image(), but customized
+ 20091010 TT.image() function created. Wrapped for image(), but customized
for texture triangles. Used to display x-y-z list data in the same
format as 'x' in contour() or image().
-20091010 TT.contour() function created. Wrapped for contour(), but customized
+ 20091010 TT.contour() function created. Wrapped for contour(), but customized
for texture triangles. Used to display x-y-z list data in the same
format as 'x' in contour() or image().
-20091010 TT.mahalanobis() function created. Wrapper for the function mahalanobis(),
+ 20091010 TT.mahalanobis() function created. Wrapper for the function mahalanobis(),
but customized for texture triangles. Results can be displayed by
TT.contour(), TT.image() [see above], contour() or image(). Calculates the
Mahalanobis distance for 2 of the 3 texture classes, on a regular x-y grid,
backtransformed into clay silt sand, used to calculate the Mahalanobis
distance.
-20091010 Added TT.xy.grid() that generates a regular grid on the
+ 20091010 Added TT.xy.grid() that generates a regular grid on the
x-y axis. Made after part of kde2d
-20091009 Modified TT.plot() function so it accepts an optionnal 'geo' option and an
+ 20091009 Modified TT.plot() function so it accepts an optionnal 'geo' option and an
'add' option that behaves like plot(add=TRUE) when non-null. This is intended
to allow overplotting a soil texture triangle over a background plotted by
another function (i.e. heat map, contour map etc.)
-20091009 Added TT.locator(). This function is equivalent to the locator() function,
+ 20091009 Added TT.locator(). This function is equivalent to the locator() function,
except that it returns clay silt sand coordinates instead.
-20091009 Added TT.xy2css() a function to convert x-y coordinates into clay silt sand.
+ 20091009 Added TT.xy2css() a function to convert x-y coordinates into clay silt sand.
-20091009 renamed TT.arrows() to TT.axis.arrows().
+ 20091009 renamed TT.arrows() to TT.axis.arrows().
Modified: pkg/soiltexture/DESCRIPTION
===================================================================
--- pkg/soiltexture/DESCRIPTION 2011-11-29 19:01:50 UTC (rev 72)
+++ pkg/soiltexture/DESCRIPTION 2012-01-06 10:02:28 UTC (rev 73)
@@ -1,6 +1,6 @@
Package: soiltexture
-Version: 1.2.6
-Date: 2011-11-17
+Version: 1.2.7
+Date: 2012-01-06
Title: Functions for soil texture plot, classification and transformation
Author: Julien MOEYS <jules_m78-soiltexture at yahoo.fr>, contributions from Wei Shangguan.
Maintainer: Julien MOEYS <jules_m78-soiltexture at yahoo.fr>
Modified: pkg/soiltexture/inst/doc/soiltexture_vignette.Rnw
===================================================================
--- pkg/soiltexture/inst/doc/soiltexture_vignette.Rnw 2011-11-29 19:01:50 UTC (rev 72)
+++ pkg/soiltexture/inst/doc/soiltexture_vignette.Rnw 2012-01-06 10:02:28 UTC (rev 73)
@@ -27,6 +27,7 @@
% \VignetteIndexEntry{The soil texture wizard: a tutorial}
% \VignetteDepends{soiltexture}
+% \VignetteDepends{xtable}
% \VignetteKeyword{soil}
% \VignetteKeyword{texture}
% \VignetteKeyword{plot}
Modified: soiltexture_compile.R
===================================================================
--- soiltexture_compile.R 2011-11-29 19:01:50 UTC (rev 72)
+++ soiltexture_compile.R 2012-01-06 10:02:28 UTC (rev 73)
@@ -2,7 +2,7 @@
pkg.dir <- "C:/_R_PACKAGES/soiltexture/pkg"
# pkg.dir <- "/home/jules/_WORK/R_PACKAGES/soiltexture/pkg"
pkg.name <- "soiltexture"
-pkg.version <- "1.2.6"
+pkg.version <- "1.2.7"
pkg.depends <- c("sp","MASS")
pkg.suggests <- c("drc","plotrix")
RVersion <- "R (>= 2.4.1)"
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