[Soiltexture-commits] r10 - / pkg pkg/soiltexture pkg/soiltexture/R pkg/soiltexture/inst pkg/soiltexture/inst/doc pkg/soiltexture/inst/doc2 pkg/soiltexture/man
noreply at r-forge.r-project.org
noreply at r-forge.r-project.org
Thu May 13 19:47:49 CEST 2010
Author: jmoeys
Date: 2010-05-13 19:47:48 +0200 (Thu, 13 May 2010)
New Revision: 10
Added:
pkg/soiltexture/inst/doc2/
pkg/soiltexture/inst/doc2/.build.timestamp
pkg/soiltexture/inst/doc2/CC-By-SA-nonported-88x31.PNG
pkg/soiltexture/inst/doc2/Rplots.pdf
pkg/soiltexture/inst/doc2/julienmoeysmailaddress-322-24.png
pkg/soiltexture/inst/doc2/julienmoeysmailaddress-382-25.png
pkg/soiltexture/inst/doc2/soiltexture_vignette.Rnw
pkg/soiltexture/inst/doc2/soiltexture_vignette.bib
pkg/soiltexture/inst/doc2/soiltexture_vignette.bib.bak
pkg/soiltexture/inst/doc2/version.txt
Removed:
pkg/soiltexture/inst/doc/CC-By-SA-nonported-88x31.PNG
pkg/soiltexture/inst/doc/Rplots.pdf
pkg/soiltexture/inst/doc/julienmoeysmailaddress-322-24.png
pkg/soiltexture/inst/doc/julienmoeysmailaddress-382-25.png
pkg/soiltexture/inst/doc/soiltexture_vignette.R
pkg/soiltexture/inst/doc/soiltexture_vignette.Rnw
pkg/soiltexture/inst/doc/soiltexture_vignette.bib
pkg/soiltexture/inst/doc/soiltexture_vignette.bib.bak
pkg/soiltexture/inst/doc/version.txt
Modified:
pkg/soiltexture.Rcheck.zip
pkg/soiltexture/DESCRIPTION
pkg/soiltexture/R/soiltexture.r
pkg/soiltexture/man/TT.env.Rd
pkg/soiltexture/man/TT.points.in.classes.Rd
pkg/soiltexture/man/soiltexture-package.Rd
pkg/soiltexture_1.0.tar.gz
pkg/soiltexture_1.0.zip
soiltexture_vignette_compile.R
Log:
Modified: pkg/soiltexture/DESCRIPTION
===================================================================
--- pkg/soiltexture/DESCRIPTION 2010-04-23 13:25:34 UTC (rev 9)
+++ pkg/soiltexture/DESCRIPTION 2010-05-13 17:47:48 UTC (rev 10)
@@ -1,6 +1,6 @@
Package: soiltexture
Version: 1.0
-Date: 2010-04-23
+Date: 2010-05-13
Title: Functions for soil texture plot, classification and transformation
Author: Julien MOEYS <jules_m78-soiltexture at yahoo.fr>
Maintainer: Julien MOEYS <jules_m78-soiltexture at yahoo.fr>
Modified: pkg/soiltexture/R/soiltexture.r
===================================================================
--- pkg/soiltexture/R/soiltexture.r 2010-04-23 13:25:34 UTC (rev 9)
+++ pkg/soiltexture/R/soiltexture.r 2010-05-13 17:47:48 UTC (rev 10)
@@ -1,3 +1,5 @@
+# source( "C:/_RTOOLS/SWEAVE_WORK/SOIL_TEXTURES/rforge/pkg/soiltexture/R/soiltexture.r" )
+# source( "http://r-forge.r-project.org/scm/viewvc.php/*checkout*/pkg/soiltexture/R/soiltexture.r?root=soiltexture" )
# +-------------------------------------------------------------------------+
# | |
# | Julien MOEYS |
@@ -821,7 +823,7 @@
text.sum = 100
), #
#
- BE.TT = list( # Belgian TRIANGLE PARAMETERS :
+ "BE.TT" = list( # Belgian TRIANGLE PARAMETERS :
#
main = "Belgium (BE)",
#
@@ -867,7 +869,7 @@
text.sum = 100
), #
#
- CA.FR.TT = list( # Canadian TRIANGLE PARAMETERS : (added 2010-04-16)
+ "CA.FR.TT" = list( # Canadian TRIANGLE PARAMETERS : (added 2010-04-16)
#
main = "Canada (CA)",
#
@@ -924,7 +926,7 @@
text.sum = 100
), #
#
- CA.EN.TT = list( # Canadian TRIANGLE PARAMETERS : (added 2010-04-16)
+ "CA.EN.TT" = list( # Canadian TRIANGLE PARAMETERS : (added 2010-04-16)
#
main = "Canada (CA)",
#
@@ -979,6 +981,60 @@
unit.tx = quote(bold('%')),
#
text.sum = 100
+ ), #
+ #
+ "ISSS.TT" = list( # ISSS Triangle parameters
+ # by Wei Shangguan, School of geography, Beijing normal university
+ # and after Verheye, W., and J. Ameryckx. 1984. Mineral fractions
+ # and classificaton of soil texture. Pedologie, 2, 215-225.
+ main = "ISSS",
+ #
+ # The list below specify the CSS coordinates of the different POINTS
+ # that are used to draw soil texture classes. One points can be
+ # used by several classes :
+ # = P01 P02 P03 P04 P05 P06 P07 P08 P09 P10 P11 P12
+ # = P13 P14 P15 P16 P17 P18
+ "tt.points" = data.frame(
+ "CLAY" = c( 1.000, 0.450, 0.450, 0.450, 0.250, 0.250, 0.250, 0.250, 0.150, 0.150, 0.150, 0.150,
+ 0.050, 0.000, 0.000, 0.000, 0.000, 0.000),
+ #
+ "SILT" = c( 0.000, 0.000, 0.450, 0.550, 0.000, 0.200, 0.450, 0.750, 0.000, 0.200, 0.450, 0.850,
+ 0.000, 0.000, 0.150, 0.350, 0.450, 1.000),
+ #
+ "SAND" = c( 0.000, 0.550, 0.100, 0.000, 0.750, 0.550, 0.300, 0.000, 0.850, 0.650, 0.400, 0.000,
+ 0.950, 1.000, 0.850, 0.650, 0.550, 0.000)
+ ), #
+ #
+ # Abreviations; Names of the texture cl; Points marking the class limits (points specified above)
+ "tt.polygons" = list(
+ "HCl" = list( "name" = "heavy clay", "points" = c(01,02,03,04) ),
+ "SaCl" = list( "name" = "sandy clay", "points" = c(02,05,06) ),
+ "LCl" = list( "name" = "light clay", "points" = c(02,06,07,03) ),
+ "SiCl" = list( "name" = "silty clay", "points" = c(03,07,08,04) ),
+ "SaClLo" = list( "name" = "sandy clay loam", "points" = c(05,09,10,06) ),
+ "ClLo" = list( "name" = "clay loam", "points" = c(06,10,11,07) ),
+ "SiClLo" = list( "name" = "silty clay loam", "points" = c(07,11,12,08) ),
+ "LoSa" = list( "name" = "loamy sand", "points" = c(09,13,15) ),
+ "Sa" = list( "name" = "sand", "points" = c(13,14,15) ),
+ "SaLo" = list( "name" = "sandy loam", "points" = c(09,15,16,10) ),
+ "Lo" = list( "name" = "loam", "points" = c(10,16,17,11) ),
+ "SiLo" = list( "name" = "silt loam", "points" = c(11,17,18,12) )
+ ), #
+ #
+ # Triangle specific parameters for triangle geometry / appearance
+ # See general parameters above for detailed description of them
+ blr.clock = rep(T,3),
+ tlr.an = c(60,60,60),
+ #
+ blr.tx = c("SAND","CLAY","SILT"),
+ #
+ base.css.ps.lim = c(0,2,20,2000),
+ tri.css.ps.lim = c(0,2,20,2000),
+ #
+ unit.ps = quote(bold(mu) * bold('m')),
+ unit.tx = quote(bold('%')),
+ #
+ text.sum = 100
) #
#
# +-------------------------------------------------------------------------+
@@ -4913,7 +4969,8 @@
text.tol = NULL,
tri.sum.tst = NULL,
tri.pos.tst = NULL,
- collapse = ", "
+ collapse = ", ",
+ texture2xy = TRUE
){ #
if( is.null( class.sys ) ){ class.sys <- TT.get("class.sys") }
#
@@ -4992,29 +5049,44 @@
) #
} #
#
- classes.points.xy <- TT.css2xy(
- tri.data = TT.data$"tt.points" * text.sum,
- geo = geo,
- #
- css.names = css.names,
- text.tol = text.tol,
+ # Operate trigonometric transformation of the values into
+ # the x-y pland, or just used 2 texture values?
+ if( texture2xy )
+ { #
+ classes.points.xy <- TT.css2xy(
+ tri.data = TT.data$"tt.points" * text.sum,
+ geo = geo,
+ #
+ css.names = css.names,
+ text.tol = text.tol,
+ #
+ tri.sum.tst = tri.sum.tst,
+ tri.pos.tst = tri.pos.tst,
+ set.par = FALSE
+ ) #
#
- tri.sum.tst = tri.sum.tst,
- tri.pos.tst = tri.pos.tst,
- set.par = FALSE
- ) #
- #
- data.points.xy <- TT.css2xy(
- tri.data = tri.data,
- geo = geo,
- #
- css.names = css.names,
- text.tol = text.tol,
+ data.points.xy <- TT.css2xy(
+ tri.data = tri.data,
+ geo = geo,
+ #
+ css.names = css.names,
+ text.tol = text.tol,
+ #
+ tri.sum.tst = tri.sum.tst,
+ tri.pos.tst = tri.pos.tst,
+ set.par = FALSE
+ ) #
+ }else{
+ classes.points.xy <- data.frame(
+ "xpos" = TT.data$"tt.points"[,"SILT"] * text.sum,
+ "ypos" = TT.data$"tt.points"[,"CLAY"] * text.sum
+ ) #
#
- tri.sum.tst = tri.sum.tst,
- tri.pos.tst = tri.pos.tst,
- set.par = FALSE
- ) #
+ data.points.xy <- data.frame(
+ "xpos" = tri.data[,css.names[2]],
+ "ypos" = tri.data[,css.names[1]]
+ ) #
+ } #
#
# Vectorisable and custom wrapper for point.in.polygon():
points.in.class <- function(
@@ -5032,7 +5104,8 @@
point.x = data.points.xy$"xpos",
point.y = data.points.xy$"ypos",
pol.x = xpol,
- pol.y = ypol
+ pol.y = ypol,
+ mode.checked = TRUE
) #
#
return( PiP.res )
Deleted: pkg/soiltexture/inst/doc/CC-By-SA-nonported-88x31.PNG
===================================================================
(Binary files differ)
Deleted: pkg/soiltexture/inst/doc/Rplots.pdf
===================================================================
--- pkg/soiltexture/inst/doc/Rplots.pdf 2010-04-23 13:25:34 UTC (rev 9)
+++ pkg/soiltexture/inst/doc/Rplots.pdf 2010-05-13 17:47:48 UTC (rev 10)
@@ -1,33185 +0,0 @@
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-331.47 89.33 m 192.40 330.20 l S
-291.73 89.33 m 172.53 295.79 l S
-252.00 89.33 m 152.67 261.38 l S
-212.27 89.33 m 132.80 226.97 l S
-172.53 89.33 m 112.93 192.56 l S
-132.80 89.33 m 93.07 158.15 l S
-93.07 89.33 m 73.20 123.74 l S
-73.20 123.74 m 430.80 123.74 l S
-93.07 158.15 m 410.93 158.15 l S
-112.93 192.56 m 391.07 192.56 l S
-132.80 226.97 m 371.20 226.97 l S
-152.67 261.38 m 351.33 261.38 l S
-172.53 295.79 m 331.47 295.79 l S
-192.40 330.20 m 311.60 330.20 l S
-212.27 364.61 m 291.73 364.61 l S
-232.13 399.02 m 271.87 399.02 l S
-271.87 399.02 m 93.07 89.33 l S
-291.73 364.61 m 132.80 89.33 l S
-311.60 330.20 m 172.53 89.33 l S
-331.47 295.79 m 212.27 89.33 l S
-351.33 261.38 m 252.00 89.33 l S
-371.20 226.97 m 291.73 89.33 l S
-391.07 192.56 m 331.47 89.33 l S
-410.93 158.15 m 371.20 89.33 l S
-430.80 123.74 m 410.93 89.33 l S
-0.349 0.349 0.349 RG
-172.53 295.79 m
-252.00 433.43 l
-331.47 295.79 l
-172.53 295.79 l
-S
-BT
-0.349 0.349 0.349 rg
-/F3 1 Tf 18.00 0.00 0.00 18.00 240.50 335.21 Tm (VF) Tj
-ET
-122.87 209.77 m
-172.53 295.79 l
-331.47 295.79 l
-381.13 209.77 l
-122.87 209.77 l
-S
-BT
-/F3 1 Tf 18.00 0.00 0.00 18.00 246.50 246.32 Tm (F) Tj
-ET
-89.09 151.27 m
-122.87 209.77 l
-321.53 209.77 l
-391.07 89.33 l
-192.40 89.33 l
-156.64 151.27 l
-89.09 151.27 l
-S
-BT
-/F3 1 Tf 18.00 0.00 0.00 18.00 204.77 143.66 Tm (M) Tj
-ET
-391.07 89.33 m
-321.53 209.77 l
-381.13 209.77 l
-450.67 89.33 l
-391.07 89.33 l
-S
-BT
-/F3 1 Tf 18.00 0.00 0.00 18.00 373.10 143.09 Tm (MF) Tj
-ET
-53.33 89.33 m
-89.09 151.27 l
-156.64 151.27 l
-192.40 89.33 l
-53.33 89.33 l
-S
-BT
-/F3 1 Tf 18.00 0.00 0.00 18.00 116.37 113.84 Tm (C) Tj
-ET
-0.000 0.000 0.000 RG
-410.93 89.33 m 415.90 80.73 l S
-371.20 89.33 m 376.17 80.73 l S
-331.47 89.33 m 336.43 80.73 l S
-291.73 89.33 m 296.70 80.73 l S
-252.00 89.33 m 256.97 80.73 l S
-212.27 89.33 m 217.23 80.73 l S
-172.53 89.33 m 177.50 80.73 l S
-132.80 89.33 m 137.77 80.73 l S
-93.07 89.33 m 98.03 80.73 l S
-73.20 123.74 m 63.27 123.74 l S
-93.07 158.15 m 83.13 158.15 l S
-112.93 192.56 m 103.00 192.56 l S
-132.80 226.97 m 122.87 226.97 l S
-152.67 261.38 m 142.73 261.38 l S
-172.53 295.79 m 162.60 295.79 l S
-192.40 330.20 m 182.47 330.20 l S
-212.27 364.61 m 202.33 364.61 l S
-232.13 399.02 m 222.20 399.02 l S
-271.87 399.02 m 276.83 407.63 l S
-291.73 364.61 m 296.70 373.22 l S
-311.60 330.20 m 316.57 338.81 l S
-331.47 295.79 m 336.43 304.40 l S
-351.33 261.38 m 356.30 269.99 l S
-371.20 226.97 m 376.17 235.58 l S
-391.07 192.56 m 396.03 201.17 l S
-410.93 158.15 m 415.90 166.76 l S
-430.80 123.74 m 435.77 132.35 l S
-BT
-0.000 0.000 0.000 rg
-/F3 1 Tf 9.00 -15.59 15.59 9.00 410.48 77.69 Tm (10) Tj
-ET
-BT
-/F3 1 Tf 9.00 -15.59 15.59 9.00 370.74 77.69 Tm (20) Tj
-ET
-BT
-/F3 1 Tf 9.00 -15.59 15.59 9.00 331.01 77.69 Tm (30) Tj
-ET
-BT
-/F3 1 Tf 9.00 -15.59 15.59 9.00 291.28 77.69 Tm (40) Tj
-ET
-BT
-/F3 1 Tf 9.00 -15.59 15.59 9.00 251.54 77.69 Tm (50) Tj
-ET
-BT
-/F3 1 Tf 9.00 -15.59 15.59 9.00 211.81 77.69 Tm (60) Tj
-ET
-BT
-/F3 1 Tf 9.00 -15.59 15.59 9.00 172.08 77.69 Tm (70) Tj
-ET
-BT
-/F3 1 Tf 9.00 -15.59 15.59 9.00 132.34 77.69 Tm (80) Tj
-ET
-BT
-/F3 1 Tf 9.00 -15.59 15.59 9.00 92.61 77.69 Tm (90) Tj
-ET
-BT
-/F3 1 Tf 18.00 0.00 0.00 18.00 43.33 117.52 Tm (10) Tj
-ET
-BT
-/F3 1 Tf 18.00 0.00 0.00 18.00 63.19 151.93 Tm (20) Tj
-ET
-BT
-/F3 1 Tf 18.00 0.00 0.00 18.00 83.06 186.34 Tm (30) Tj
-ET
-BT
-/F3 1 Tf 18.00 0.00 0.00 18.00 102.93 220.75 Tm (40) Tj
-ET
-BT
-/F3 1 Tf 18.00 0.00 0.00 18.00 122.79 255.16 Tm (50) Tj
-ET
-BT
-/F3 1 Tf 18.00 0.00 0.00 18.00 142.66 289.57 Tm (60) Tj
-ET
-BT
-/F3 1 Tf 18.00 0.00 0.00 18.00 162.53 323.98 Tm (70) Tj
-ET
-BT
-/F3 1 Tf 18.00 0.00 0.00 18.00 182.39 358.39 Tm (80) Tj
-ET
-BT
-/F3 1 Tf 18.00 0.00 0.00 18.00 202.26 392.81 Tm (90) Tj
-ET
-BT
-/F3 1 Tf 9.00 15.59 -15.59 9.00 282.18 404.45 Tm (10) Tj
-ET
-BT
-/F3 1 Tf 9.00 15.59 -15.59 9.00 302.05 370.04 Tm (20) Tj
-ET
-BT
-/F3 1 Tf 9.00 15.59 -15.59 9.00 321.92 335.63 Tm (30) Tj
-ET
-BT
-/F3 1 Tf 9.00 15.59 -15.59 9.00 341.78 301.22 Tm (40) Tj
-ET
-BT
-/F3 1 Tf 9.00 15.59 -15.59 9.00 361.65 266.81 Tm (50) Tj
-ET
-BT
-/F3 1 Tf 9.00 15.59 -15.59 9.00 381.52 232.40 Tm (60) Tj
-ET
-BT
-/F3 1 Tf 9.00 15.59 -15.59 9.00 401.38 197.99 Tm (70) Tj
-ET
-BT
-/F3 1 Tf 9.00 15.59 -15.59 9.00 421.25 163.58 Tm (80) Tj
-ET
-BT
[TRUNCATED]
To get the complete diff run:
svnlook diff /svnroot/soiltexture -r 10
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