[Seqinr-forum] pbil.univ-lyon1.fr:5558 cannot be opened

[Jean Lobry]

Dear Super-Simon,

many thanks for handling this. Everything seems OK on my
side but I'm very far away from New Zealand !

@David : is it OK for you now ?

Best,

JLO

Le 12/12/2017 à 11:42, Simon Penel a écrit :
> Hello,
> 
> the seqinr server is running now.
> Let me know if you encounter any trouble...
> 
> all the best
> Simon
> 
> 
> Le 12/12/2017 à 10:19, Simon Penel a écrit :
>> Hello,
>>
>> the seqinr server is currently down for maintenance, it will be 
>> restarted later today.
>> We are sorry for the inconvenience it is causing you.
>>
>> all the best
>>
>> Simon
>>
>>
>>
>>
>> Le 12/12/2017 à 09:56, Eme, David a écrit :
>>>
>>> Dear seqinr user,
>>>
>>>
>>> I used to extract sequences using seqinr functions regularly but 
>>> today I received the following message when choosing the bank:
>>>
>>> choosebank("Genbank", verbose="TRUE")
>>>
>>> Error in socketConnection(host = host, port = port, server = server, 
>>> blocking = blocking,  :
>>>   cannot open the connection
>>> In addition: Warning message:
>>> In socketConnection(host = host, port = port, server = server, 
>>> blocking = blocking,  :
>>>   pbil.univ-lyon1.fr:5558 cannot be opened
>>> Error in choosebank("genbank") :
>>>   I wasn't able to open the socket connection:
>>>    o Check that your are connected to the internet.
>>>    o Check that port 5558 is not closed by a firewall.
>>>    o Try to increase timeout value (current is 5 seconds).
>>>
>>> Here my sessionInfo()
>>> R version 3.2.0 (2015-04-16)
>>> Platform: i386-w64-mingw32/i386 (32-bit)
>>> Running under: Windows 7 (build 7601) Service Pack 1
>>>
>>> locale:
>>> [1] LC_COLLATE=French_France.1252 LC_CTYPE=French_France.1252 
>>> LC_MONETARY=French_France.1252
>>> [4] LC_NUMERIC=C  LC_TIME=French_France.1252
>>>
>>> attached base packages:
>>> [1] stats     graphics  grDevices utils     datasets methods  base
>>>
>>> other attached packages:
>>> [1] seqinr_3.3-6
>>>
>>> loaded via a namespace (and not attached):
>>> [1] tools_3.2.0 ade4_1.7-2
>>>
>>>
>>> So I think the problem come from the server, in addition I also tried 
>>> to access seqinr R web page 
>>> (http://pbil.univ-lyon1.fr/software/SeqinR) but I got the following 
>>> message:
>>>
>>>
>>>   Ce site est inaccessible
>>>
>>> *pbil.univ-lyon1.fr* n'autorise pas la connexion.
>>>
>>>   * Accédez à http://www.univ-lyon1.fr/
>>>   * Effectuez une recherche Google sur pbil univ lyon1 fr software
>>>     SeqinR
>>> <https://www.google.co.nz/search?q=pbil%20univ%20lyon1%20fr%20software%20SeqinR>. 
>>>
>>>
>>> ERR_CONNECTION_REFUSED
>>>
>>>
>>> So it seems that the problem comes from the server that refuse the 
>>> connection, but why?
>>>
>>>
>>> For information, I'm based in New Zealand.
>>>
>>>
>>> Thanks very much in advance!
>>>
>>>
>>> David
>>>
>>>
>>>
>>> _______________________________________________
>>> Seqinr-forum mailing list
>>> Seqinr-forum at lists.r-forge.r-project.org
>>> https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/seqinr-forum 
>>>
>>
>>
>