[Seqinr-forum] Bug in comp()

[Simon Penel]

  Dear Darren,

thanks a lot for  your mail and  I apologise for the delay in answering

I submited a corrected version of comp to the seqinr forge, you can 
download it by typing:


install.packages("seqinr", repos="http://R-Forge.R-project.org")


or  on the forge

https://r-forge.r-project.org/R/?group_id=220



All the best

Simon


> Message: 1
> Date: Fri, 10 Sep 2010 11:23:49 +0200 (CEST)
> From:noreply at r-forge.r-project.org
> Subject: [Seqinr-commits] r1751 - pkg/R
> To:seqinr-commits at lists.r-forge.r-project.org
> Message-ID:<20100910092349.327D09CE08 at r-forge.r-project.org>
> Content-Type: text/plain; charset=UTF-8
>
> Author: simonpenel
> Date: 2010-09-10 11:23:48 +0200 (Fri, 10 Sep 2010)
> New Revision: 1751
>
> Modified:
>     pkg/R/comp.R
> Log:
> Adding y and r in the list of bases in  the comp function - Thanks to Darren Obbard
>
>
> Modified: pkg/R/comp.R


Le 29/07/10 16:24, Darren Obbard a écrit :
> Hi,
>
> There is a bug in comp
>
> # y and r are missing from the list of all bases, and return NA
> #---------------------------
> require("seqinr")
> example(comp)
> allbases
> comp(allbases)
> comp(allbases,ambiguous=TRUE)
> allbases<-c(allbases,"y","r")
> comp(allbases,ambiguous=TRUE)
> #---------------------------
> #
>
> Darren


-- 
Simon Penel
Laboratoire de Biometrie et Biologie Evolutive
Bat 711 - CNRS UMR 5558 - Universite Lyon 1
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