[Seqinr-forum] release 2.0-5

Jean lobry lobry at biomserv.univ-lyon1.fr
Thu Sep 17 13:26:10 CEST 2009


Dear seqinR,

seqinr 2.0-5 is on its way to CRAN. This is a minor release, no
hurry to update.

Best,

Z.


Release Notes for version 2.0-5
-------------------------------

  o  New utility function circle() to draw a circle.

  o  Two more examples of files to be imported with the readBins()
     and readPanels() functions are now available in the abif
     folder: NGM_Bins.txt and NGM_Pa.txt, respectively.

  o  New function plotPanels() to plot amplicon size ranges of STR
     kits data.

  o  New utility function col2alpha() to add a transparency
     chanel to a standard R color.

  o  New ABIF example file samplefsa2ps.fsa used in the
     read.abif() function to reproduce figure 1A from [1].

  o  New function move() aliased as mv() to rename
     an object without deep copy.

  o  New function swap() to exchange two objects.

[1] @article{Krawczyk2009,
author = {Krawczyk, J. and  Goesmann, A. and Nolte, R. and Werber, M.
   and Weisshaar, B.},
title = {{Trace2PS} and {FSA2PS}: two software toolkits for converting
   trace and fsa files to {PostScript} format},
journal = {Source Code for Biology and Medicine},
year = {2009},
volume = {4},
pages = {4} }
-- 
Jean R. Lobry            (lobry at biomserv.univ-lyon1.fr)
Laboratoire BBE-CNRS-UMR-5558, Univ. C. Bernard - LYON I,
43 Bd 11/11/1918, F-69622 VILLEURBANNE CEDEX, FRANCE
allo  : +33 472 43 27 56     fax    : +33 472 43 13 88
http://pbil.univ-lyon1.fr/members/lobry/


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