[Seqinr-commits] r2105 - in pkg: . man

[noreply at r-forge.r-project.org]

Author: simonpenel
Date: 2020-10-01 11:15:39 +0200 (Thu, 01 Oct 2020)
New Revision: 2105

Modified:
   pkg/DESCRIPTION
   pkg/man/ECH.Rd
   pkg/man/JLO.Rd
   pkg/man/aaindex.Rd
   pkg/man/get.db.growth.Rd
   pkg/man/pmw.Rd
   pkg/man/read.abif.Rd
Log:
Modification of urls

Modified: pkg/DESCRIPTION
===================================================================
--- pkg/DESCRIPTION	2020-09-16 11:26:49 UTC (rev 2104)
+++ pkg/DESCRIPTION	2020-10-01 09:15:39 UTC (rev 2105)
@@ -1,7 +1,7 @@
 Encoding: UTF-8
 Package: seqinr
-Version: 4.2-2
-Date: 2020-09-12
+Version: 4.2-3
+Date: 2020-10-1
 Title: Biological Sequences Retrieval and Analysis
 Authors at R: c(person("Delphine", "Charif", role = "aut"),
              person("Olivier", "Clerc", role = "ctb"),

Modified: pkg/man/ECH.Rd
===================================================================
--- pkg/man/ECH.Rd	2020-09-16 11:26:49 UTC (rev 2104)
+++ pkg/man/ECH.Rd	2020-10-01 09:15:39 UTC (rev 2105)
@@ -21,7 +21,7 @@
   \code{citation("seqinr")}
 
   Anonymous (2006) Applied Biosystem Genetic Analysis Data File Format.
-  Available at \url{http://www.appliedbiosystems.com/support/software_community/ABIF_File_Format.pdf}.
+  Available at \url{https://www.thermofisher.com/at/en/home/brands/applied-biosystems.html}.
   Last visited on 03-NOV-2008.
 }
 \author{J.R. Lobry}

Modified: pkg/man/JLO.Rd
===================================================================
--- pkg/man/JLO.Rd	2020-09-16 11:26:49 UTC (rev 2104)
+++ pkg/man/JLO.Rd	2020-10-01 09:15:39 UTC (rev 2105)
@@ -33,7 +33,7 @@
   \code{citation("seqinr")}
 
   Anonymous (2006) Applied Biosystem Genetic Analysis Data File Format.
-  Available at \url{http://www.appliedbiosystems.com/support/software_community/ABIF_File_Format.pdf}.
+  Available at \url{https://www.thermofisher.com/at/en/home/brands/applied-biosystems.html}.
   Last visited on 03-NOV-2008.
 }
 \author{J.R. Lobry}

Modified: pkg/man/aaindex.Rd
===================================================================
--- pkg/man/aaindex.Rd	2020-09-16 11:26:49 UTC (rev 2104)
+++ pkg/man/aaindex.Rd	2020-10-01 09:15:39 UTC (rev 2105)
@@ -570,7 +570,7 @@
 Hydrophobicity index (Fasman, 1989)
 }
 \source{
-\url{http://www.genome.jp/aaindex}
+\url{https://www.genome.jp/aaindex/}
 }
 \references{
 

Modified: pkg/man/get.db.growth.Rd
===================================================================
--- pkg/man/get.db.growth.Rd	2020-09-16 11:26:49 UTC (rev 2104)
+++ pkg/man/get.db.growth.Rd	2020-10-01 09:15:39 UTC (rev 2105)
@@ -43,7 +43,7 @@
 
 }
 \references{
-\url{http://www.ebi.ac.uk/embl/Documentation/Release_notes/current/relnotes.txt}
+\url{https://www.ebi.ac.uk/ena/browser}
 
 Lobry, J.R. (2004) Life History Traits and Genome Structure:
 Aerobiosis and G+C Content in Bacteria. \emph{Lectures Notes in Computer Sciences},

Modified: pkg/man/pmw.Rd
===================================================================
--- pkg/man/pmw.Rd	2020-09-16 11:26:49 UTC (rev 2104)
+++ pkg/man/pmw.Rd	2020-10-01 09:15:39 UTC (rev 2105)
@@ -17,7 +17,7 @@
   \item{Ar}{ a named vector for the mean relative atomic masses of CHONPS atoms. Defaults
   values are from to the natural terrestrial sources according to the 43rd IUPAC 
   General Assembly in Beijing, China in August 2005 (See 
-  \url{http://iupac.org/category/recent-releases/}
+  \url{https://iupac.org/category/recent-releases/}
   for updates).}
   \item{gravity}{ gravitational field constant in standard units. Defaults to 9.81 m/s2, that
   is to the average value at see level on Earth. Negative values are not allowed. }

Modified: pkg/man/read.abif.Rd
===================================================================
--- pkg/man/read.abif.Rd	2020-09-16 11:26:49 UTC (rev 2104)
+++ pkg/man/read.abif.Rd	2020-10-01 09:15:39 UTC (rev 2105)
@@ -30,7 +30,7 @@
 \code{citation("seqinR")}
 
 Anonymous (2006) Applied Biosystem Genetic Analysis Data File Format.
-Available at \url{http://www.appliedbiosystems.com/support/software_community/ABIF_File_Format.pdf}.
+Available at \url{https://www.thermofisher.com/at/en/home/brands/applied-biosystems.html}.
 Last visited on 03-NOV-2008.
 
 The figure in the example section is an attempt to reproduce figure 1A from: