[Seqinr-commits] r2011 - pkg/man

[noreply at r-forge.r-project.org]

Author: jeanlobry
Date: 2016-10-09 20:27:21 +0200 (Sun, 09 Oct 2016)
New Revision: 2011

Added:
   pkg/man/gcO2.Rd
Log:
 

Added: pkg/man/gcO2.Rd
===================================================================
--- pkg/man/gcO2.Rd	                        (rev 0)
+++ pkg/man/gcO2.Rd	2016-10-09 18:27:21 UTC (rev 2011)
@@ -0,0 +1,21 @@
+\name{gcO2}
+\alias{gcO2}
+\docType{data}
+\title{GC content and aerobiosis in bacteria}
+\description{
+  This data set was used in Naya \emph{et al.} (2002) to study the relationship between the genomic G+C content of bacteria and whether they are (stricly) aerobes or anaerobes.
+}
+\format{
+\code{gcO2} is a data frame.  
+}
+\source{
+Naya, H., Romero, H., Zavala, A., Alvarez, B. and Musto, H. (2002) Aerobiosis increases the Genomic Guanine Plus Cytosine Content (GC%) in prokaryotes. \emph{Journal of Molecular Evolution}, \bold{55}:260-264.
+
+Data imported into seqinr by J.R. Lobry on 09-OCT-2016. Original source location given in the article was \code{http://oeg.fcien.edu.uy/GCprok/} but is no more active. Data were copied at \url{http://pbil.univ- lyon1.fr/R/donnees/gcO2.txt} (\emph{cf.} section 2.1 in Lobry, J.R (2004) Life history traits and genome structure: aerobiosis and G+C content in bacteria. \emph{Lecture Notes in Computer Sciences}, \bold{3039}:679-686). Import was from this last ressource.
+}
+\references{
+  \code{citation("seqinr")}
+}
+\examples{
+data(gcO2)
+}