[Seqinr-commits] r1857 - www/src/mainmatter

[noreply at r-forge.r-project.org]

Author: jeanlobry
Date: 2016-06-01 16:48:58 +0200 (Wed, 01 Jun 2016)
New Revision: 1857

Modified:
   www/src/mainmatter/nonparastats.rnw
   www/src/mainmatter/nonparastats.tex
Log:
bug in query fixed

Modified: www/src/mainmatter/nonparastats.rnw
===================================================================
--- www/src/mainmatter/nonparastats.rnw	2016-06-01 14:44:49 UTC (rev 1856)
+++ www/src/mainmatter/nonparastats.rnw	2016-06-01 14:48:58 UTC (rev 1857)
@@ -542,7 +542,7 @@
 
 <<querycds,fig=F,eval=T>>=
 choosebank("greviews")
-query("coli","N=U00096_GR ET T=CDS ET K=2.3.1.79@")
+coli <- query("coli","N=U00096_GR ET T=CDS ET K=2.3.1.79@")
 sequence <- getSequence(coli$req[[1]])
 annot <- getAnnot(coli$req[[1]])
 closebank()

Modified: www/src/mainmatter/nonparastats.tex
===================================================================
--- www/src/mainmatter/nonparastats.tex	2016-06-01 14:44:49 UTC (rev 1856)
+++ www/src/mainmatter/nonparastats.tex	2016-06-01 14:48:58 UTC (rev 1857)
@@ -746,7 +746,7 @@
 \begin{Schunk}
 \begin{Sinput}
  choosebank("greviews")
- query("coli","N=U00096_GR ET T=CDS ET K=2.3.1.79@")
+ coli <- query("coli","N=U00096_GR ET T=CDS ET K=2.3.1.79@")
  sequence <- getSequence(coli$req[[1]])
  annot <- getAnnot(coli$req[[1]])
  closebank()
@@ -1296,20 +1296,20 @@
 This part was compiled under the following \Rlogo{}~environment:
 
 \begin{itemize}\raggedright
-  \item R version 3.1.0 (2014-04-10), \verb|x86_64-apple-darwin13.1.0|
+  \item R version 3.2.4 (2016-03-10), \verb|x86_64-apple-darwin13.4.0|
   \item Locale: \verb|fr_FR.UTF-8/fr_FR.UTF-8/fr_FR.UTF-8/C/fr_FR.UTF-8/fr_FR.UTF-8|
   \item Base packages: base, datasets, graphics, grDevices, grid,
     methods, stats, utils
-  \item Other packages: ade4~1.6-2, ape~3.1-2, grImport~0.9-0,
-    MASS~7.3-31, seqinr~3.0-11, tseries~0.10-32, XML~3.98-1.1,
-    xtable~1.7-3
-  \item Loaded via a namespace (and not attached): lattice~0.20-29,
-    nlme~3.1-117, quadprog~1.5-5, tools~3.1.0, zoo~1.7-11
+  \item Other packages: ade4~1.7-4, ape~3.5, grImport~0.9-0,
+    MASS~7.3-45, seqinr~3.1-5, tseries~0.10-35, XML~3.98-1.4,
+    xtable~1.8-2
+  \item Loaded via a namespace (and not attached): lattice~0.20-33,
+    nlme~3.1-125, quadprog~1.5-5, tools~3.2.4, zoo~1.7-12
 \end{itemize}
 There were two compilation steps:
 
 \begin{itemize}
-  \item \Rlogo{} compilation time was: Fri Jun  6 21:25:11 2014
+  \item \Rlogo{} compilation time was: Wed Jun  1 16:46:33 2016
   \item \LaTeX{} compilation time was: \today
 \end{itemize}