[Seqinr-commits] r1758 - pkg pkg/inst/doc pkg/inst/sequences www

noreply at r-forge.r-project.org noreply at r-forge.r-project.org
Tue Apr 5 12:05:24 CEST 2011 

Author: simonpenel
Date: 2011-04-05 12:05:16 +0200 (Tue, 05 Apr 2011)
New Revision: 1758

Added:
   www/ATH1_pep_cm_20040228.fasta
Removed:
   pkg/inst/doc/seqinr_2_0-7.pdf
   pkg/inst/sequences/ATH1_pep_cm_20040228.fasta
Modified:
   pkg/DESCRIPTION
Log:
The sequence file ATH1_pep_cm_20040228.fasta is only used for vignette building thus it has been moved into
the www directory. The vignette seqinr_2_0-7.pdf has been removed since it  is already present in the www
directory.


Modified: pkg/DESCRIPTION
===================================================================
--- pkg/DESCRIPTION	2011-03-28 15:22:50 UTC (rev 1757)
+++ pkg/DESCRIPTION	2011-04-05 10:05:16 UTC (rev 1758)
@@ -1,10 +1,10 @@
 Package: seqinr
-Version: 3.0-2
-Date: 2011-03-28
+Version: 3.0-3
+Date: 2011-04-05
 Title: Biological Sequences Retrieval and Analysis 
 Author: Delphine Charif and Jean R. Lobry and Anamaria Necsulea and Leonor Palmeira and Simon Penel
 Maintainer: Simon Penel <penel at biomserv.univ-lyon1.fr>
-Depends: R (>= 2.5.0)
+Depends: R (>= 2.10.0)
 Suggests: ade4, segmented
 Description: Exploratory data analysis and data visualization
   for biological sequence (DNA and protein) data. Include also

Deleted: pkg/inst/doc/seqinr_2_0-7.pdf
===================================================================
--- pkg/inst/doc/seqinr_2_0-7.pdf	2011-03-28 15:22:50 UTC (rev 1757)
+++ pkg/inst/doc/seqinr_2_0-7.pdf	2011-04-05 10:05:16 UTC (rev 1758)
@@ -1,201389 +0,0 @@
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-  61.77 781.00 l
-  63.69 779.99 l
-  65.41 778.59 l
-  66.81 776.87 l
-  67.81 774.96 l
-  68.41 772.91 l
-  68.61 770.80 l
-  68.61 770.80 l
-h f
-Q q
-0.180 0.541 1.000 rg
-  54.73 763.02 m
-  53.77 764.20 l
-  53.08 765.51 l
-  52.67 766.91 l
-  52.53 768.36 l
-  52.67 769.80 l
-  53.08 771.20 l
-  53.77 772.52 l
-  54.73 773.70 l
-  55.91 774.66 l
-  57.22 775.35 l
-  58.62 775.76 l
-  60.07 775.89 l
-  61.52 775.76 l
-  62.92 775.35 l
-  64.23 774.66 l
-  65.41 773.70 l
-  66.37 772.52 l
-  67.06 771.20 l
-  67.47 769.80 l
-  67.61 768.36 l
-  67.47 766.91 l
-  67.06 765.51 l
-  66.37 764.20 l
-  65.41 763.02 l
-  64.23 762.05 l
-  62.92 761.37 l
-  61.52 760.96 l
-  60.07 760.82 l
-  58.62 760.96 l
-  57.22 761.37 l
-  55.91 762.05 l
-  54.73 763.02 l
-  54.73 763.02 l
-h f
-Q q
-0.839 0.961 0.961 rg
-  65.37 725.22 m
-  64.02 724.00 l
-  62.57 722.94 l
-  61.05 722.04 l
-  59.45 721.31 l
-  57.81 720.74 l
-  56.13 720.33 l
-  54.41 720.08 l
-  52.69 720.00 l
-  50.97 720.08 l
-  49.26 720.33 l
-  47.57 720.74 l
-  45.93 721.31 l
-  44.34 722.04 l
-  42.81 722.94 l
-  41.36 724.00 l
-  40.01 725.22 l
-  38.78 726.57 l
-  37.72 728.02 l
-  36.83 729.55 l
-  36.09 731.14 l
-  35.52 732.79 l
-  35.12 734.47 l
-  34.87 736.18 l
-  34.79 737.90 l
-  34.87 739.63 l
-  35.12 741.34 l
-  35.52 743.02 l
-  36.09 744.67 l
-  36.83 746.26 l
-  37.72 747.79 l
-  38.78 749.23 l
-  40.01 750.59 l
-  41.36 751.81 l
-  42.81 752.87 l
-  44.34 753.77 l
-  45.93 754.50 l
-  47.57 755.07 l
-  49.26 755.48 l
-  50.97 755.72 l
-  52.69 755.81 l
-  54.41 755.72 l
-  56.13 755.48 l
-  57.81 755.07 l
-  59.45 754.50 l
-  61.05 753.77 l
-  62.57 752.87 l
-  64.02 751.81 l
-  65.37 750.59 l
-  66.60 749.23 l
-  67.66 747.79 l
-  68.56 746.26 l
-  69.29 744.67 l
-  69.86 743.02 l
-  70.27 741.34 l
-  70.51 739.63 l
-  70.59 737.90 l
-  70.51 736.18 l
-  70.27 734.47 l
-  69.86 732.79 l
-  69.29 731.14 l
-  68.56 729.55 l
-  67.66 728.02 l
-  66.60 726.57 l
-  65.37 725.22 l
-  65.37 725.22 l
-h f
-Q q
-0.631 0.914 0.984 rg
-  55.14 754.80 m
-  56.53 754.73 l
-  57.91 754.54 l
-  59.27 754.21 l
-  60.60 753.75 l
-  61.88 753.15 l
-  63.11 752.43 l
-  64.28 751.57 l
-  65.37 750.59 l
-  66.36 749.49 l
-  67.22 748.33 l
-  67.94 747.09 l
-  68.53 745.81 l
-  68.99 744.48 l
-  69.32 743.12 l
-  69.52 741.74 l
-  69.59 740.35 l
-  69.52 738.96 l
-  69.32 737.58 l
-  68.99 736.22 l
-  68.53 734.89 l
-  67.94 733.61 l
-  67.22 732.38 l
-  66.36 731.21 l
-  65.37 730.12 l
-  64.28 729.13 l
-  63.11 728.27 l
-  61.88 727.55 l
-  60.60 726.96 l
-  59.27 726.50 l
-  57.91 726.17 l
-  56.53 725.97 l
-  55.14 725.90 l
-  53.75 725.97 l
-  52.37 726.17 l
-  51.01 726.50 l
-  49.68 726.96 l
-  48.40 727.55 l
-  47.16 728.27 l
-  46.00 729.13 l
-  44.90 730.12 l
-  43.92 731.21 l
-  43.06 732.38 l
-  42.34 733.61 l
-  41.74 734.89 l
-  41.28 736.22 l
-  40.95 737.58 l
-  40.76 738.96 l
-  40.69 740.35 l
-  40.76 741.74 l
-  40.95 743.12 l
-  41.28 744.48 l
-  41.74 745.81 l
-  42.34 747.09 l
-  43.06 748.33 l
-  43.92 749.49 l
-  44.90 750.59 l
-  46.00 751.57 l
-  47.16 752.43 l
-  48.40 753.15 l
-  49.68 753.75 l
-  51.01 754.21 l
-  52.37 754.54 l
-  53.75 754.73 l
-  55.14 754.80 l
-  55.14 754.80 l
-h f
-Q q
-0.345 0.776 0.988 rg
-  57.59 753.79 m
-  59.70 753.59 l
-  61.74 752.99 l
-  63.65 751.99 l
-  65.37 750.59 l
-  66.78 748.87 l
-  67.78 746.95 l
-  68.38 744.91 l
-  68.58 742.80 l
-  68.38 740.69 l
-  67.78 738.65 l
-  66.78 736.73 l
-  65.37 735.01 l
-  63.65 733.61 l
-  61.74 732.61 l
-  59.70 732.01 l
-  57.59 731.81 l
-  55.48 732.01 l
-  53.43 732.61 l
-  51.52 733.61 l
-  49.80 735.01 l
-  48.40 736.73 l
-  47.39 738.65 l
-  46.79 740.69 l
-  46.59 742.80 l
-  46.79 744.91 l
-  47.39 746.95 l
-  48.40 748.87 l
-  49.80 750.59 l
-  51.52 751.99 l
-  53.43 752.99 l
-  55.48 753.59 l
-  57.59 753.79 l
-  57.59 753.79 l
-h f
-Q q
-0.180 0.541 1.000 rg
-  65.37 739.91 m
-  64.19 738.94 l
-  62.88 738.26 l
-  61.48 737.85 l
-  60.03 737.71 l
-  58.59 737.85 l
-  57.19 738.26 l
-  55.87 738.94 l
-  54.69 739.91 l
-  53.73 741.09 l
-  53.05 742.40 l
-  52.63 743.80 l
-  52.50 745.25 l
-  52.63 746.69 l
-  53.05 748.09 l
-  53.73 749.41 l
-  54.69 750.59 l
-  55.87 751.55 l
-  57.19 752.24 l
-  58.59 752.65 l
-  60.03 752.78 l
-  61.48 752.65 l
-  62.88 752.24 l
-  64.19 751.55 l
-  65.37 750.59 l
-  66.34 749.41 l
-  67.02 748.09 l
-  67.44 746.69 l
-  67.57 745.25 l
-  67.44 743.80 l
-  67.02 742.40 l
-  66.34 741.09 l
-  65.37 739.91 l
-  65.37 739.91 l
-h f
-Q q
-0.839 0.961 0.961 rg
-  103.04 750.59 m
-  104.26 749.23 l
-  105.32 747.79 l
-  106.22 746.26 l
-  106.95 744.67 l
-  107.52 743.02 l
-  107.93 741.34 l
-  108.18 739.63 l
-  108.26 737.90 l
-  108.18 736.18 l
-  107.93 734.47 l
-  107.52 732.79 l
-  106.95 731.14 l
-  106.22 729.55 l
-  105.32 728.02 l
-  104.26 726.57 l
-  103.04 725.22 l
-  101.68 724.00 l
-  100.24 722.94 l
[TRUNCATED]

To get the complete diff run:
    svnlook diff /svnroot/seqinr -r 1758

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