[Seqinr-commits] r1730 - pkg/man

[noreply at r-forge.r-project.org]

Author: lobry
Date: 2010-03-06 18:33:31 +0100 (Sat, 06 Mar 2010)
New Revision: 1730

Modified:
   pkg/man/read.alignment.Rd
Log:
No more File argument

Modified: pkg/man/read.alignment.Rd
===================================================================
--- pkg/man/read.alignment.Rd	2010-03-06 17:33:12 UTC (rev 1729)
+++ pkg/man/read.alignment.Rd	2010-03-06 17:33:31 UTC (rev 1730)
@@ -6,7 +6,7 @@
  These formats are used to store nucleotide or protein multiple alignments. 
 }
 \usage{
-read.alignment(file, format, forceToLower = TRUE, File = NULL)
+read.alignment(file, format, forceToLower = TRUE)
 }
 \arguments{
   \item{file}{the name of the file which the aligned sequences are to be read from. 
@@ -17,8 +17,6 @@
   \item{forceToLower}{a logical defaulting to TRUE stating whether the returned
     characters in the sequence should be in lower case (introduced in seqinR
     release 1.1-3).}
-  \item{File}{synonymous of file maintained for backward compatibility.
-    As from seqinR 1.1-3 this argument is deprecated and a warning is issued.}
 }
 \details{
   \describe{