[Seqinr-commits] r1705 - pkg/man

[noreply at r-forge.r-project.org]

Author: lobry
Date: 2009-11-12 19:10:48 +0100 (Thu, 12 Nov 2009)
New Revision: 1705

Added:
   pkg/man/where.is.this.acc.Rd
Log:
looking for an accession number utility

Added: pkg/man/where.is.this.acc.Rd
===================================================================
--- pkg/man/where.is.this.acc.Rd	                        (rev 0)
+++ pkg/man/where.is.this.acc.Rd	2009-11-12 18:10:48 UTC (rev 1705)
@@ -0,0 +1,29 @@
+\name{where.is.this.acc}
+\alias{where.is.this.acc}
+\title{Scans databases for a given sequence accession number}
+\description{
+This function loops over all availabale ACNUC databases to look for
+a given sequence accession number. This is useful when you have
+a sequence accession number and you don't know in which database
+it is present. 
+}
+\usage{
+where.is.this.acc(acc, ...)
+}
+\arguments{
+  \item{acc}{An accession number as a string of characters such as \code{"NC_001416"}.}
+  \item{\dots}{Arguments passed to the function \code{\link{choosebank}}.}
+}
+\value{
+The function resturns invisibly a vector of strings of characters for the names of the ACNUC 
+databases in which the accession number was found.
+}
+\references{\code{citation("seqinr")}}
+\author{J.R. Lobry}
+
+\seealso{\code{\link{choosebank}} to open a given ACNUC database.}
+\examples{
+  \dontrun{# Need internet connection
+  where.is.this.acc("NC_001416")
+  }
+}