[Seqinr-commits] r1697 - in pkg/inst/doc: . src/figs src/tables

noreply at r-forge.r-project.org noreply at r-forge.r-project.org
Thu Nov 5 15:06:22 CET 2009


Author: lobry
Date: 2009-11-05 15:06:19 +0100 (Thu, 05 Nov 2009)
New Revision: 1697

Removed:
   pkg/inst/doc/seqinr_2_0-3.pdf
Modified:
   pkg/inst/doc/src/figs/cover.pdf
   pkg/inst/doc/src/tables/aacost.tex
   pkg/inst/doc/src/tables/dpqrtable.tex
   pkg/inst/doc/src/tables/toyaa.tex
   pkg/inst/doc/src/tables/toycodon.tex
Log:
 

/usr/local/bin/subversion_commit-email: `/usr/bin/svnlook diff /svnroot/seqinr -r 1697' failed with this output:
Deleted: pkg/inst/doc/seqinr_2_0-3.pdf
===================================================================
--- pkg/inst/doc/seqinr_2_0-3.pdf	2009-11-05 14:03:00 UTC (rev 1696)
+++ pkg/inst/doc/seqinr_2_0-3.pdf	2009-11-05 14:06:19 UTC (rev 1697)
@@ -1,201102 +0,0 @@
-%PDF-1.4
-%ÐÔÅØ
-5 0 obj
-<< /S /GoTo /D (part.1) >>
-endobj
-8 0 obj
-(I Frontmatter)
-endobj
-9 0 obj
-<< /S /GoTo /D (chapter.1) >>
-endobj
-12 0 obj
-(Licence of this document)
-endobj
-13 0 obj
-<< /S /GoTo /D (part.2) >>
-endobj
-16 0 obj
-(II Mainmatter)
-endobj
-17 0 obj
-<< /S /GoTo /D (chapter.2) >>
-endobj
-20 0 obj
-(Introduction)
-endobj
-21 0 obj
-<< /S /GoTo /D (section.2.1) >>
-endobj
-24 0 obj
-(About ACNUC)
-endobj
-25 0 obj
-<< /S /GoTo /D (section.2.2) >>
-endobj
-28 0 obj
-(About R and CRAN)
-endobj
-29 0 obj
-<< /S /GoTo /D (section.2.3) >>
-endobj
-32 0 obj
-(About this document)
-endobj
-33 0 obj
-<< /S /GoTo /D (section.2.4) >>
-endobj
-36 0 obj
-(About sequin and seqinR)
-endobj
-37 0 obj
-<< /S /GoTo /D (section.2.5) >>
-endobj
-40 0 obj
-(About getting started)
-endobj
-41 0 obj
-<< /S /GoTo /D (section.2.6) >>
-endobj
-44 0 obj
-(About running R in batch mode)
-endobj
-45 0 obj
-<< /S /GoTo /D (section.2.7) >>
-endobj
-48 0 obj
-(About the learning curve)
-endobj
-49 0 obj
-<< /S /GoTo /D (subsection.2.7.1) >>
-endobj
-52 0 obj
-(Wheel \(the\))
-endobj
-53 0 obj
-<< /S /GoTo /D (subsection.2.7.2) >>
-endobj
-56 0 obj
-(Hotline)
-endobj
-57 0 obj
-<< /S /GoTo /D (subsection.2.7.3) >>
-endobj
-60 0 obj
-(Automation)
-endobj
-61 0 obj
-<< /S /GoTo /D (subsection.2.7.4) >>
-endobj
-64 0 obj
-(Reproducibility)
-endobj
-65 0 obj
-<< /S /GoTo /D (subsection.2.7.5) >>
-endobj
-68 0 obj
-(Fine tuning)
-endobj
-69 0 obj
-<< /S /GoTo /D (subsection.2.7.6) >>
-endobj
-72 0 obj
-(Data as fast moving targets)
-endobj
-73 0 obj
-<< /S /GoTo /D (subsection.2.7.7) >>
-endobj
-76 0 obj
-(Sweave\(\) and xtable\(\))
-endobj
-77 0 obj
-<< /S /GoTo /D (chapter.3) >>
-endobj
-80 0 obj
-(Importing sequences from flat files)
-endobj
-81 0 obj
-<< /S /GoTo /D (section.3.1) >>
-endobj
-84 0 obj
-(Importing raw sequence data from FASTA files)
-endobj
-85 0 obj
-<< /S /GoTo /D (subsection.3.1.1) >>
-endobj
-88 0 obj
-(FASTA files examples)
-endobj
-89 0 obj
-<< /S /GoTo /D (subsection.3.1.2) >>
-endobj
-92 0 obj
-(The function read.fasta\(\))
-endobj
-93 0 obj
-<< /S /GoTo /D (subsection.3.1.3) >>
-endobj
-96 0 obj
-(The function write.fasta\(\))
-endobj
-97 0 obj
-<< /S /GoTo /D (subsection.3.1.4) >>
-endobj
-100 0 obj
-(Big room examples)
-endobj
-101 0 obj
-<< /S /GoTo /D (section.3.2) >>
-endobj
-104 0 obj
-(Importing aligned sequence data)
-endobj
-105 0 obj
-<< /S /GoTo /D (subsection.3.2.1) >>
-endobj
-108 0 obj
-(Aligned sequences files examples)
-endobj
-109 0 obj
-<< /S /GoTo /D (subsection.3.2.2) >>
-endobj
-112 0 obj
-(The function read.alignment\(\))
-endobj
-113 0 obj
-<< /S /GoTo /D (subsection.3.2.3) >>
-endobj
-116 0 obj
-(A simple example with the louse-gopher data)
-endobj
-117 0 obj
-<< /S /GoTo /D (chapter.4) >>
-endobj
-120 0 obj
-(Importing sequences from ACNUC databases)
-endobj
-121 0 obj
-<< /S /GoTo /D (section.4.1) >>
-endobj
-124 0 obj
-(Choose a bank)
-endobj
-125 0 obj
-<< /S /GoTo /D (section.4.2) >>
-endobj
-128 0 obj
-(Make your query)
-endobj
-129 0 obj
-<< /S /GoTo /D (section.4.3) >>
-endobj
-132 0 obj
-(Extract sequences of interest)
-endobj
-133 0 obj
-<< /S /GoTo /D (subsection.4.3.1) >>
-endobj
-136 0 obj
-(Introduction)
-endobj
-137 0 obj
-<< /S /GoTo /D (subsection.4.3.2) >>
-endobj
-140 0 obj
-(Extacting sequences with getSequence\(\))
-endobj
-141 0 obj
-<< /S /GoTo /D (subsection.4.3.3) >>
-endobj
-144 0 obj
-(Extracting sequences with trans-splicing)
-endobj
-145 0 obj
-<< /S /GoTo /D (subsection.4.3.4) >>
-endobj
-148 0 obj
-(Extracting sequences from many entries)
-endobj
-149 0 obj
-<< /S /GoTo /D (chapter.5) >>
-endobj
-152 0 obj
-(The query language)
-endobj
-153 0 obj
-<< /S /GoTo /D (section.5.1) >>
-endobj
-156 0 obj
-(Where to find information)
-endobj
-157 0 obj
-<< /S /GoTo /D (section.5.2) >>
-endobj
-160 0 obj
-(Case sensitivity and ambiguities resolution)
-endobj
-161 0 obj
-<< /S /GoTo /D (section.5.3) >>
-endobj
-164 0 obj
-(Selection criteria)
-endobj
-165 0 obj
-<< /S /GoTo /D (subsection.5.3.1) >>
-endobj
-168 0 obj
-(Introduction)
-endobj
-169 0 obj
-<< /S /GoTo /D (subsection.5.3.2) >>
-endobj
-172 0 obj
-(SP=taxon)
-endobj
-173 0 obj
-<< /S /GoTo /D (subsection.5.3.3) >>
-endobj
-176 0 obj
-(TID=id)
-endobj
-177 0 obj
-<< /S /GoTo /D (subsection.5.3.4) >>
-endobj
-180 0 obj
-(K=keyword)
-endobj
-181 0 obj
-<< /S /GoTo /D (subsection.5.3.5) >>
-endobj
-184 0 obj
-(T=type)
-endobj
-185 0 obj
-<< /S /GoTo /D (subsection.5.3.6) >>
-endobj
-188 0 obj
-(J=journal\137name)
-endobj
-189 0 obj
-<< /S /GoTo /D (subsection.5.3.7) >>
-endobj
-192 0 obj
-(R=refcode)
-endobj
-193 0 obj
-<< /S /GoTo /D (subsection.5.3.8) >>
-endobj
-196 0 obj
-(AU=name)
-endobj
-197 0 obj
-<< /S /GoTo /D (subsection.5.3.9) >>
-endobj
-200 0 obj
-(AC=accession\137no)
-endobj
-201 0 obj
-<< /S /GoTo /D (subsection.5.3.10) >>
-endobj
-204 0 obj
-(N=seq\137name)
-endobj
-205 0 obj
-<< /S /GoTo /D (subsection.5.3.11) >>
-endobj
-208 0 obj
-(Y=year or Y>year or Y<year)
-endobj
-209 0 obj
-<< /S /GoTo /D (subsection.5.3.12) >>
-endobj
-212 0 obj
-(O=organelle)
-endobj
-213 0 obj
-<< /S /GoTo /D (subsection.5.3.13) >>
-endobj
-216 0 obj
-(M=molecule)
-endobj
-217 0 obj
-<< /S /GoTo /D (subsection.5.3.14) >>
-endobj
-220 0 obj
-(ST=status)
-endobj
-221 0 obj
-<< /S /GoTo /D (subsection.5.3.15) >>
-endobj
-224 0 obj
-(F=file\137name)
-endobj
-225 0 obj
-<< /S /GoTo /D (subsection.5.3.16) >>
-endobj
-228 0 obj
-(FA=file\137name)
-endobj
-229 0 obj
-<< /S /GoTo /D (subsection.5.3.17) >>
-endobj
-232 0 obj
-(FK=file\137name)
-endobj
-233 0 obj
-<< /S /GoTo /D (subsection.5.3.18) >>
-endobj
-236 0 obj
-(FS=file\137name)
-endobj
-237 0 obj
-<< /S /GoTo /D (subsection.5.3.19) >>
-endobj
-240 0 obj
-(list\137name)
-endobj
-241 0 obj
-<< /S /GoTo /D (section.5.4) >>
-endobj
-244 0 obj
-(Operators)
-endobj
-245 0 obj
-<< /S /GoTo /D (subsection.5.4.1) >>
-endobj
-248 0 obj
-(AND)
-endobj
-249 0 obj
-<< /S /GoTo /D (subsection.5.4.2) >>
-endobj
-252 0 obj
-(OR)
-endobj
-253 0 obj
-<< /S /GoTo /D (subsection.5.4.3) >>
-endobj
-256 0 obj
-(NOT)
-endobj
-257 0 obj
-<< /S /GoTo /D (subsection.5.4.4) >>
-endobj
-260 0 obj
-(PAR)
-endobj
-261 0 obj
-<< /S /GoTo /D (subsection.5.4.5) >>
-endobj
-264 0 obj
-(SUB)
-endobj
-265 0 obj
-<< /S /GoTo /D (subsection.5.4.6) >>
-endobj
-268 0 obj
-(PS)
-endobj
-269 0 obj
-<< /S /GoTo /D (subsection.5.4.7) >>
-endobj
-272 0 obj
-(PK)
-endobj
-273 0 obj
-<< /S /GoTo /D (subsection.5.4.8) >>
-endobj
-276 0 obj
-(UN)
-endobj
-277 0 obj
-<< /S /GoTo /D (subsection.5.4.9) >>
-endobj
-280 0 obj
-(SD)
-endobj
-281 0 obj
-<< /S /GoTo /D (subsection.5.4.10) >>
-endobj
-284 0 obj
-(KD)
-endobj
-285 0 obj
-<< /S /GoTo /D (chapter.6) >>
-endobj
-288 0 obj
-(Importing zlib-compressed sequences)
-endobj
-289 0 obj
-<< /S /GoTo /D (section.6.1) >>
-endobj
-292 0 obj
-(Introduction)
-endobj
-293 0 obj
-<< /S /GoTo /D (section.6.2) >>
-endobj
-296 0 obj
-(Extacting 78,573 complete human nuclear CDS)
-endobj
-297 0 obj
-<< /S /GoTo /D (section.6.3) >>
-endobj
-300 0 obj
-(Extacting 78,573 complete human nuclear Proteins)
-endobj
-301 0 obj
-<< /S /GoTo /D (section.6.4) >>
-endobj
-304 0 obj
-(Sanity check)
-endobj
-305 0 obj
-<< /S /GoTo /D (chapter.7) >>
-endobj
-308 0 obj
-(How to deal with sequences)
-endobj
-309 0 obj
-<< /S /GoTo /D (section.7.1) >>
-endobj
-312 0 obj
-(Sequence classes)
-endobj
-313 0 obj
-<< /S /GoTo /D (section.7.2) >>
-endobj
-316 0 obj
-(Generic methods for sequences)
-endobj
-317 0 obj
-<< /S /GoTo /D (subsection.7.2.1) >>
-endobj
-320 0 obj
-(From classes to methods)
-endobj
-321 0 obj
-<< /S /GoTo /D (subsection.7.2.2) >>
-endobj
-324 0 obj
-(From methods to classes)
-endobj
-325 0 obj
-<< /S /GoTo /D (section.7.3) >>
-endobj
-328 0 obj
-(Internal representation of sequences)
-endobj
-329 0 obj
-<< /S /GoTo /D (subsection.7.3.1) >>
-endobj
-332 0 obj
-(Sequences as vectors of characters)
-endobj
-333 0 obj
-<< /S /GoTo /D (subsection.7.3.2) >>
-endobj
-336 0 obj
-(Sequences as strings)
-endobj
-337 0 obj
-<< /S /GoTo /D (chapter.8) >>
-endobj
-340 0 obj
-(Installation of a local ACNUC socket server and of a local ACNUC database on your machine.)
-endobj
-341 0 obj
-<< /S /GoTo /D (section.8.1) >>
-endobj
-344 0 obj
-(Introduction)
-endobj
-345 0 obj
-<< /S /GoTo /D (section.8.2) >>
-endobj
-348 0 obj
-(System requirement)
-endobj
-349 0 obj
-<< /S /GoTo /D (section.8.3) >>
-endobj
-352 0 obj
-(Setting a local ACNUC database to be queried by the server)
-endobj
-353 0 obj
-<< /S /GoTo /D (section.8.4) >>
-endobj
-356 0 obj
-(Build the ACNUC sockets server from the sources.)
-endobj
-357 0 obj
-<< /S /GoTo /D (subsection.8.4.1) >>
-endobj
-360 0 obj
-(Download the sources.)
-endobj
-361 0 obj
-<< /S /GoTo /D (subsection.8.4.2) >>
-endobj
-364 0 obj
-(Build the ACNUC sockets server.)
-endobj
-365 0 obj
-<< /S /GoTo /D (subsection.8.4.3) >>
-endobj
-368 0 obj
-(Setting the ACNUC sockets server.)
-endobj
-369 0 obj
-<< /S /GoTo /D (subsection.8.4.4) >>
-endobj
-372 0 obj
-(Using seqinR to query your local socket server.)
-endobj
-373 0 obj
-<< /S /GoTo /D (section.8.5) >>
-endobj
-376 0 obj
-(Building your own ACNUC database.)
-endobj
-377 0 obj
-<< /S /GoTo /D (subsection.8.5.1) >>
-endobj
-380 0 obj
-(Database flatfiles formats.)
-endobj
-381 0 obj
-<< /S /GoTo /D (subsection.8.5.2) >>
-endobj
-384 0 obj
-(Download the ACNUC dababase management tools.)
-endobj
-385 0 obj
-<< /S /GoTo /D (subsection.8.5.3) >>
-endobj
-388 0 obj
-(Install the ACNUC dababase management tools.)
-endobj
-389 0 obj
-<< /S /GoTo /D (subsection.8.5.4) >>
-endobj
-392 0 obj
-(Database building : index generation)
-endobj
-393 0 obj
-<< /S /GoTo /D (section.8.6) >>
-endobj
-396 0 obj
-(Misc)
-endobj
-397 0 obj
-<< /S /GoTo /D (subsection.8.6.1) >>
-endobj
-400 0 obj
-(Other tools for acnuc)
-endobj
-401 0 obj
-<< /S /GoTo /D (section.8.7) >>
-endobj
-404 0 obj
-(Technical description of the racnucd daemon)
-endobj
-405 0 obj
-<< /S /GoTo /D (section.8.8) >>
-endobj
-408 0 obj
-(ACNUC remote access protocol)
-endobj
-409 0 obj
-<< /S /GoTo /D (section.8.9) >>
-endobj
-412 0 obj
-(Citation)
-endobj
-413 0 obj
-<< /S /GoTo /D (chapter.9) >>
-endobj
-416 0 obj
-(Multivariate analyses)
-endobj
-417 0 obj
-<< /S /GoTo /D (section.9.1) >>
-endobj
-420 0 obj
-(Correspondence analysis)
-endobj
-421 0 obj
-<< /S /GoTo /D (section.9.2) >>
-endobj
-424 0 obj
-(Synonymous and non-synonymous analyses)
-endobj
-425 0 obj
-<< /S /GoTo /D (chapter.10) >>
-endobj
-428 0 obj
-(Nonparametric statistics)
-endobj
-429 0 obj
-<< /S /GoTo /D (section.10.1) >>
-endobj
-432 0 obj
-(Introduction)
-endobj
-433 0 obj
-<< /S /GoTo /D (section.10.2) >>
-endobj
-436 0 obj
-(Elementary nonparametric statistics)
-endobj
-437 0 obj
-<< /S /GoTo /D (subsection.10.2.1) >>
-endobj
-440 0 obj
-(Introduction)
-endobj
-441 0 obj
-<< /S /GoTo /D (subsection.10.2.2) >>
-endobj
-444 0 obj
-(Rank sum)
-endobj
-445 0 obj
-<< /S /GoTo /D (subsection.10.2.3) >>
-endobj
-448 0 obj
-(Rank variance)
-endobj
-449 0 obj
-<< /S /GoTo /D (subsection.10.2.4) >>
-endobj
-452 0 obj
-(Clustering around the observed centre)
-endobj
-453 0 obj
-<< /S /GoTo /D (subsection.10.2.5) >>
-endobj
-456 0 obj
-(Number of runs)
-endobj
-457 0 obj
-<< /S /GoTo /D (subsection.10.2.6) >>
-endobj
-460 0 obj
-(Multiple clusters)
-endobj
-461 0 obj
-<< /S /GoTo /D (section.10.3) >>
-endobj
-464 0 obj
-(Dinucleotides over- and under-representation)
-endobj
-465 0 obj
-<< /S /GoTo /D (subsection.10.3.1) >>
-endobj
-468 0 obj
-(Introduction)
-endobj
-469 0 obj
-<< /S /GoTo /D (subsection.10.3.2) >>
-endobj
-472 0 obj
-(The rho statistic)
-endobj
-473 0 obj
-<< /S /GoTo /D (subsection.10.3.3) >>
-endobj
-476 0 obj
-(The z-score statistic)
-endobj
-477 0 obj
-<< /S /GoTo /D (subsection.10.3.4) >>
-endobj
-480 0 obj
-(Comparing statistics on a sequence)
-endobj
-481 0 obj
-<< /S /GoTo /D (section.10.4) >>
-endobj
-484 0 obj
-(UV exposure and dinucleotide content)
-endobj
-485 0 obj
-<< /S /GoTo /D (subsection.10.4.1) >>
-endobj
-488 0 obj
-(The expected impact of UV light on genomic content)
-endobj
-489 0 obj
-<< /S /GoTo /D (subsection.10.4.2) >>
-endobj
-492 0 obj
-(The measured impact of UV light on genomic content)
-endobj
-493 0 obj
-<< /S /GoTo /D (chapter.11) >>
-endobj
-496 0 obj
-(RISA in silico with seqinR)
-endobj
-497 0 obj
-<< /S /GoTo /D (section.11.1) >>
-endobj
-500 0 obj
-(Introduction)
-endobj
-501 0 obj
-<< /S /GoTo /D (section.11.2) >>
-endobj
-504 0 obj
-(The primers)
-endobj
-505 0 obj
-<< /S /GoTo /D (section.11.3) >>
-endobj
-508 0 obj
-(Finding a primer location)
-endobj
-509 0 obj
-<< /S /GoTo /D (section.11.4) >>
-endobj
-512 0 obj
-(Compute the length of the intergenic space)
-endobj
-513 0 obj
-<< /S /GoTo /D (section.11.5) >>
-endobj
-516 0 obj
-(Compute IGS for a sequence fragment)
-endobj
-517 0 obj
-<< /S /GoTo /D (section.11.6) >>
-endobj
-520 0 obj
-(Compute IGS for a species)
-endobj
-521 0 obj
-<< /S /GoTo /D (section.11.7) >>
-endobj
-524 0 obj
-(Loop over many species)
-endobj
-525 0 obj
-<< /S /GoTo /D (subsection.11.7.1) >>
-endobj
-528 0 obj
-(Preprocessing: select interesting species)
-endobj
-529 0 obj
-<< /S /GoTo /D (subsection.11.7.2) >>
-endobj
-532 0 obj
-(Loop over our specie list)
-endobj
-533 0 obj
-<< /S /GoTo /D (section.11.8) >>
-endobj
-536 0 obj
-(Playing with results)
-endobj
-537 0 obj
-<< /S /GoTo /D (part.3) >>
-endobj
-540 0 obj
-(III Appendix)
-endobj
-541 0 obj
-<< /S /GoTo /D (chapter.12) >>
-endobj
-544 0 obj
-(FAQ: Frequently Asked Questions)
-endobj
-545 0 obj
-<< /S /GoTo /D (section.12.1) >>
-endobj
-548 0 obj
-(How can I compute a score over a moving window?)
-endobj
-549 0 obj
-<< /S /GoTo /D (section.12.2) >>
-endobj
-552 0 obj
-(How can I extract just a fragment from my sequence?)
-endobj
-553 0 obj
-<< /S /GoTo /D (section.12.3) >>
-endobj
-556 0 obj
-(How do I compute a score on my sequences?)
-endobj
-557 0 obj
-<< /S /GoTo /D (section.12.4) >>
-endobj
-560 0 obj
-(Why do I have not exactly the same G+C content as in codonW?)
-endobj
-561 0 obj
-<< /S /GoTo /D (section.12.5) >>
-endobj
-564 0 obj
-(How do I get a sequence from its name?)
-endobj
-565 0 obj
-<< /S /GoTo /D (chapter.13) >>
-endobj
-568 0 obj
-(GNU Free Documentation License)
-endobj
-569 0 obj
-<< /S /GoTo /D (section.13.1) >>
-endobj
-572 0 obj
-(APPLICABILITY AND DEFINITIONS)
-endobj
-573 0 obj
-<< /S /GoTo /D (section.13.2) >>
-endobj
-576 0 obj
-(VERBATIM COPYING)
-endobj
-577 0 obj
-<< /S /GoTo /D (section.13.3) >>
-endobj
-580 0 obj
-( COPYING IN QUANTITY)
-endobj
-581 0 obj
-<< /S /GoTo /D (section.13.4) >>
-endobj
-584 0 obj
-(MODIFICATIONS)
-endobj
-585 0 obj
-<< /S /GoTo /D (section.13.5) >>
-endobj
-588 0 obj
-(COMBINING DOCUMENTS)
-endobj
-589 0 obj
-<< /S /GoTo /D (section.13.6) >>
-endobj
-592 0 obj
-(COLLECTIONS OF DOCUMENTS)
-endobj
-593 0 obj
-<< /S /GoTo /D (section.13.7) >>
-endobj
-596 0 obj
-(AGGREGATION WITH INDEPENDENT WORKS)
-endobj
-597 0 obj
-<< /S /GoTo /D (section.13.8) >>
-endobj
-600 0 obj
-(TRANSLATION)
-endobj
-601 0 obj
-<< /S /GoTo /D (section.13.9) >>
-endobj
-604 0 obj
-(TERMINATION)
-endobj
-605 0 obj
-<< /S /GoTo /D (section.13.10) >>
-endobj
-608 0 obj
-(FUTURE REVISIONS OF THIS LICENSE)
-endobj
-609 0 obj
-<< /S /GoTo /D (chapter.14) >>
-endobj
-612 0 obj
-(Genetic codes)
-endobj
-613 0 obj
-<< /S /GoTo /D (section.14.1) >>
-endobj
-616 0 obj
-(Standard genetic code)
-endobj
-617 0 obj
-<< /S /GoTo /D (section.14.2) >>
-endobj
-620 0 obj
-(Available genetic code numbers)
-endobj
-621 0 obj
-<< /S /GoTo /D (chapter.15) >>
-endobj
-624 0 obj
-(Release notes)
-endobj
-625 0 obj
-<< /S /GoTo /D (chapter.16) >>
-endobj
-628 0 obj
-(Test suite: run the don't run)
-endobj
-629 0 obj
-<< /S /GoTo /D (section.16.1) >>
-endobj
-632 0 obj
-(Introduction)
-endobj
-633 0 obj
-<< /S /GoTo /D (section.16.2) >>
-endobj
-636 0 obj
-(Stop list)
-endobj
-637 0 obj
-<< /S /GoTo /D (section.16.3) >>
-endobj
-640 0 obj
-(Figure list)
-endobj
-641 0 obj
-<< /S /GoTo /D (section.16.4) >>
-endobj
-644 0 obj
-(Don't run generator)
-endobj
-645 0 obj
-<< /S /GoTo /D (subsection.16.4.1) >>
-endobj
-648 0 obj
-(GC\(\))
-endobj
-649 0 obj
-<< /S /GoTo /D (subsection.16.4.2) >>
-endobj
-652 0 obj
-(SeqAcnucWeb\(\))
-endobj
-653 0 obj
-<< /S /GoTo /D (subsection.16.4.3) >>
-endobj
-656 0 obj
-(alllistranks\(\))
-endobj
-657 0 obj
-<< /S /GoTo /D (subsection.16.4.4) >>
-endobj
-660 0 obj
-(autosocket\(\))
-endobj
-661 0 obj
-<< /S /GoTo /D (subsection.16.4.5) >>
-endobj
-664 0 obj
-(choosebank\(\))
-endobj
-665 0 obj
-<< /S /GoTo /D (subsection.16.4.6) >>
-endobj
-668 0 obj
-(closebank\(\))
-endobj
-669 0 obj
-<< /S /GoTo /D (subsection.16.4.7) >>
-endobj
-672 0 obj
-(countfreelists\(\))
-endobj
-673 0 obj
-<< /S /GoTo /D (subsection.16.4.8) >>
-endobj
-676 0 obj
-(countsubseqs\(\))
-endobj
-677 0 obj
-<< /S /GoTo /D (subsection.16.4.9) >>
-endobj
-680 0 obj
-(crelistfromclientdata\(\))
-endobj
-681 0 obj
-<< /S /GoTo /D (subsection.16.4.10) >>
-endobj
-684 0 obj
-(dia.bactgensize\(\))
-endobj
-685 0 obj
-<< /S /GoTo /D (subsection.16.4.11) >>
-endobj
-688 0 obj
-(extract.breakpoints\(\))
-endobj
-689 0 obj
-<< /S /GoTo /D (subsection.16.4.12) >>
-endobj
-692 0 obj
-(getAnnot\(\))
-endobj
-693 0 obj
-<< /S /GoTo /D (subsection.16.4.13) >>
-endobj
-696 0 obj
-(getKeyword\(\))
-endobj
-697 0 obj
-<< /S /GoTo /D (subsection.16.4.14) >>
-endobj
-700 0 obj
-(getLength\(\))
-endobj
-701 0 obj
-<< /S /GoTo /D (subsection.16.4.15) >>
-endobj
-704 0 obj
-(getLocation\(\))
-endobj
-705 0 obj
-<< /S /GoTo /D (subsection.16.4.16) >>
-endobj
-708 0 obj
-(getName\(\))
-endobj
-709 0 obj
-<< /S /GoTo /D (subsection.16.4.17) >>
-endobj
-712 0 obj
-(getSequence\(\))
-endobj
-713 0 obj
-<< /S /GoTo /D (subsection.16.4.18) >>
-endobj
-716 0 obj
-(getTrans\(\))
-endobj
-717 0 obj
-<< /S /GoTo /D (subsection.16.4.19) >>
-endobj
-720 0 obj
-(getType\(\))
-endobj
-721 0 obj
-<< /S /GoTo /D (subsection.16.4.20) >>
-endobj
-724 0 obj
-(getlistrank\(\))
-endobj
-725 0 obj
-<< /S /GoTo /D (subsection.16.4.21) >>
-endobj
-728 0 obj
-(getliststate\(\))
-endobj
-729 0 obj
-<< /S /GoTo /D (subsection.16.4.22) >>
-endobj
-732 0 obj
-(gfrag\(\))
-endobj
-733 0 obj
-<< /S /GoTo /D (subsection.16.4.23) >>
-endobj
-736 0 obj
-(ghelp\(\))
-endobj
-737 0 obj
-<< /S /GoTo /D (subsection.16.4.24) >>
-endobj
-740 0 obj
-(isenum\(\))
-endobj
-741 0 obj
-<< /S /GoTo /D (subsection.16.4.25) >>
-endobj
-744 0 obj
-(knowndbs\(\))
-endobj
-745 0 obj
-<< /S /GoTo /D (subsection.16.4.26) >>
-endobj
-748 0 obj
-(oriloc\(\))
-endobj
-749 0 obj
-<< /S /GoTo /D (subsection.16.4.27) >>
-endobj
-752 0 obj
-(prepgatannots\(\))
-endobj
-753 0 obj
-<< /S /GoTo /D (subsection.16.4.28) >>
-endobj
-756 0 obj
-(prettyseq\(\))
-endobj
-757 0 obj
-<< /S /GoTo /D (subsection.16.4.29) >>
-endobj
-760 0 obj
-(print.SeqAcnucWeb\(\))
-endobj
-761 0 obj
-<< /S /GoTo /D (subsection.16.4.30) >>
-endobj
-764 0 obj
-(print.qaw\(\))
-endobj
-765 0 obj
-<< /S /GoTo /D (subsection.16.4.31) >>
-endobj
-768 0 obj
-(query\(\))
-endobj
-769 0 obj
-<< /S /GoTo /D (subsection.16.4.32) >>
-endobj
-772 0 obj
-(readfirstrec\(\))
-endobj
-773 0 obj
-<< /S /GoTo /D (subsection.16.4.33) >>
-endobj
-776 0 obj
-(rearranged.oriloc\(\))
-endobj
-777 0 obj
-<< /S /GoTo /D (subsection.16.4.34) >>
-endobj
-780 0 obj
-(residuecount\(\))
-endobj
-781 0 obj
-<< /S /GoTo /D (subsection.16.4.35) >>
-endobj
-784 0 obj
-(savelist\(\))
-endobj
-785 0 obj
-<< /S /GoTo /D (subsection.16.4.36) >>
-endobj
-788 0 obj
-(setlistname\(\))
-endobj
-789 0 obj
-<< /S /GoTo /D (subsection.16.4.37) >>
-endobj
-792 0 obj
-(translate\(\))
-endobj
-793 0 obj
-<< /S /GoTo /D (chapter.17) >>
-endobj
-796 0 obj
-(Informations about databases available at pbil)
-endobj
-797 0 obj
-<< /S /GoTo /D (section.17.1) >>
-endobj
-800 0 obj
-(Introduction)
-endobj
-801 0 obj
-<< /S /GoTo /D (section.17.2) >>
-endobj
-804 0 obj
-( genbank )
-endobj
-805 0 obj
-<< /S /GoTo /D (section.17.3) >>
-endobj
-808 0 obj
-( embl )
-endobj
-809 0 obj
-<< /S /GoTo /D (section.17.4) >>
-endobj
-812 0 obj
-( emblwgs )
-endobj
-813 0 obj
-<< /S /GoTo /D (section.17.5) >>
-endobj
-816 0 obj
-( swissprot )
-endobj
-817 0 obj
-<< /S /GoTo /D (section.17.6) >>
-endobj
-820 0 obj
-( ensembl )
-endobj
-821 0 obj
-<< /S /GoTo /D (section.17.7) >>
-endobj
-824 0 obj
-( refseq )
-endobj
-825 0 obj
-<< /S /GoTo /D (section.17.8) >>
-endobj
-828 0 obj
-( nrsub )
-endobj
-829 0 obj
-<< /S /GoTo /D (section.17.9) >>
-endobj
-832 0 obj
-( hobacnucl )
-endobj
-833 0 obj
-<< /S /GoTo /D (section.17.10) >>
-endobj
-836 0 obj
-( hobacprot )
-endobj
-837 0 obj
-<< /S /GoTo /D (section.17.11) >>
-endobj
-840 0 obj
-( hovergendna )
-endobj
-841 0 obj
-<< /S /GoTo /D (section.17.12) >>
-endobj
-844 0 obj
-( hovergen )
-endobj
-845 0 obj
-<< /S /GoTo /D (section.17.13) >>
-endobj
-848 0 obj
-( hogenom )
-endobj
-849 0 obj
-<< /S /GoTo /D (section.17.14) >>
-endobj
-852 0 obj
-( hogenomdna )
-endobj
-853 0 obj
-<< /S /GoTo /D (section.17.15) >>
-endobj
-856 0 obj
-( hogennucl )
-endobj
-857 0 obj
-<< /S /GoTo /D (section.17.16) >>
-endobj
-860 0 obj
-( hogenprot )
-endobj
-861 0 obj
-<< /S /GoTo /D (section.17.17) >>
-endobj
-864 0 obj
-( hoverclnu )
-endobj
-865 0 obj
-<< /S /GoTo /D (section.17.18) >>
-endobj
-868 0 obj
-( hoverclpr )
-endobj
-869 0 obj
-<< /S /GoTo /D (section.17.19) >>
-endobj
-872 0 obj
-( homolens3 )
-endobj
-873 0 obj
-<< /S /GoTo /D (section.17.20) >>
-endobj
-876 0 obj
-( homolens3dna )
-endobj
-877 0 obj
-<< /S /GoTo /D (section.17.21) >>
-endobj
-880 0 obj
-( homolens )
-endobj
-881 0 obj
-<< /S /GoTo /D (section.17.22) >>
-endobj
-884 0 obj
-( homolensdna )
-endobj
-885 0 obj
-<< /S /GoTo /D (section.17.23) >>
-endobj
-888 0 obj
-( greview )
-endobj
-889 0 obj
-<< /S /GoTo /D (section.17.24) >>
-endobj
-892 0 obj
-( polymorphix )
-endobj
-893 0 obj
-<< /S /GoTo /D (section.17.25) >>
-endobj
-896 0 obj
-( emglib )
-endobj
-897 0 obj
-<< /S /GoTo /D (section.17.26) >>
-endobj
-900 0 obj
-( HAMAPnucl )
-endobj
-901 0 obj
-<< /S /GoTo /D (section.17.27) >>
-endobj
-904 0 obj
-( HAMAPprot )
-endobj
-905 0 obj
-<< /S /GoTo /D (section.17.28) >>
-endobj
-908 0 obj
-( taxobacgen )
-endobj
-909 0 obj
-<< /S /GoTo /D (section.17.29) >>
-endobj
-912 0 obj
-( apis )
-endobj
-913 0 obj
-<< /S /GoTo /D (section.17.30) >>
-endobj
-916 0 obj
-( human )
-endobj
-917 0 obj
-<< /S /GoTo /D (section.17.31) >>
-endobj
-920 0 obj
-( emblTP )
-endobj
-921 0 obj
-<< /S /GoTo /D (section.17.32) >>
-endobj
-924 0 obj
-( swissprotTP )
-endobj
-925 0 obj
-<< /S /GoTo /D (section.17.33) >>
-endobj
-928 0 obj
-( hoverprotTP )
-endobj
-929 0 obj
-<< /S /GoTo /D (section.17.34) >>
-endobj
-932 0 obj
-( hovernuclTP )
-endobj
-933 0 obj
-<< /S /GoTo /D (section.17.35) >>
-endobj
-936 0 obj
-( trypano )
-endobj
-937 0 obj
-<< /S /GoTo /D (section.17.36) >>
-endobj
-940 0 obj
-( ensembl24 )
-endobj
-941 0 obj
-<< /S /GoTo /D (section.17.37) >>
-endobj
-944 0 obj
-( ensembl34 )
-endobj
-945 0 obj
-<< /S /GoTo /D (section.17.38) >>
-endobj
-948 0 obj
-( ensembl41 )
-endobj
-949 0 obj
-<< /S /GoTo /D (section.17.39) >>
-endobj
-952 0 obj
-( ensembl47 )
-endobj
-953 0 obj
-<< /S /GoTo /D (section.17.40) >>
-endobj
-956 0 obj
-( ensembl49 )
-endobj
-957 0 obj
-<< /S /GoTo /D (section.17.41) >>
-endobj
-960 0 obj
-( macaca45 )
-endobj
-961 0 obj
-<< /S /GoTo /D (section.17.42) >>
-endobj
-964 0 obj
-( dog45 )
-endobj
-965 0 obj
-<< /S /GoTo /D (section.17.43) >>
-endobj
-968 0 obj
-( dog47 )
-endobj
-969 0 obj
-<< /S /GoTo /D (section.17.44) >>
-endobj
-972 0 obj
-( equus49 )
-endobj
-973 0 obj
-<< /S /GoTo /D (section.17.45) >>
-endobj
-976 0 obj
-( pongo49 )
-endobj
-977 0 obj
-<< /S /GoTo /D (section.17.46) >>
-endobj
-980 0 obj
-( rattus49 )
-endobj
-981 0 obj
-<< /S /GoTo /D (section.17.47) >>
-endobj
-984 0 obj
-( mouse38 )
-endobj
-985 0 obj
-<< /S /GoTo /D (section.17.48) >>
-endobj
-988 0 obj
-( homolens4 )
-endobj
-989 0 obj
-<< /S /GoTo /D (section.17.49) >>
-endobj
-992 0 obj
-( homolens4dna )
-endobj
-993 0 obj
-<< /S /GoTo /D (section.17.50) >>
-endobj
-996 0 obj
-( hoppsigen )
-endobj
-997 0 obj
-<< /S /GoTo /D (section.17.51) >>
-endobj
-1000 0 obj
-( nurebnucl )
-endobj
-1001 0 obj
-<< /S /GoTo /D (section.17.52) >>
-endobj
-1004 0 obj
-( nurebprot )
-endobj
-1005 0 obj
-<< /S /GoTo /D (section.17.53) >>
-endobj
-1008 0 obj
-( hogendnucl )
-endobj
-1009 0 obj
-<< /S /GoTo /D (section.17.54) >>
-endobj
-1012 0 obj
-( hogendprot )
-endobj
-1013 0 obj
-<< /S /GoTo /D (section.17.55) >>
-endobj
-1016 0 obj
-( genomicro1 )
-endobj
-1017 0 obj
-<< /S /GoTo /D (section.17.56) >>
-endobj
-1020 0 obj
-( genomicro2 )
-endobj
-1021 0 obj
-<< /S /GoTo /D (section.17.57) >>
-endobj
-1024 0 obj
-( genomicro3 )
-endobj
-1025 0 obj
-<< /S /GoTo /D (section.17.58) >>
-endobj
-1028 0 obj
-( genomicro4 )
-endobj
-1029 0 obj
-<< /S /GoTo /D (section.17.59) >>
-endobj
-1032 0 obj
-( dickeya )
-endobj
-1033 0 obj
-<< /S /GoTo /D (section.17.60) >>
-endobj
-1036 0 obj
-( tetra53 )
-endobj
-1037 0 obj
-<< /S /GoTo /D (section.17.61) >>
-endobj
-1040 0 obj
-( trypanosoma )
-endobj
-1041 0 obj
-<< /S /GoTo /D (chapter*.59) >>
-endobj
-1044 0 obj
-(List of tables)
-endobj
-1045 0 obj
-<< /S /GoTo /D (chapter*.60) >>
-endobj
-1048 0 obj
-(List of figures)
-endobj
-1049 0 obj
-<< /S /GoTo /D (chapter*.60) >>
-endobj
-1051 0 obj
-(Bibliography)
-endobj
-1052 0 obj
-<< /S /GoTo /D [1053 0 R  /Fit ] >>
-endobj
-1056 0 obj <<
-/Length 73        
-/Filter /FlateDecode
->>
-stream
-xÚ3PHW0Ppç2€Ò†@Ò@DêZêYZ)$çrrê˜Cä€lC0"	×Ð÷Ì5TpÉç
-B4Óa4 0Þ€
-endstream
-endobj
-1053 0 obj <<
-/Type /Page
-/Contents 1056 0 R
-/Resources 1055 0 R
-/MediaBox [0 0 595.276 841.89]
-/Parent 1059 0 R
->> endobj
-1054 0 obj <<
-/Type /XObject
-/Subtype /Form
-/FormType 1
-/PTEX.FileName (../figs/cover.pdf)
-/PTEX.PageNumber 1
-/PTEX.InfoDict 1060 0 R
-/BBox [0 0 595 841]
-/Resources <<
-/ProcSet [ /PDF /Text ]
-/Font << /F2 1061 0 R>>
-/ExtGState <<
->>>>
-/Length 1062 0 R
->>
-stream
-q
-Q q
-Q q
-1.000 1.000 1.000 rg
-  27.06 803.62 m
-  568.22 803.62 l
-  568.22 38.27 l
-  27.06 38.27 l
-  27.06 803.62 l
-h f
-Q q
-0.839 0.961 0.961 rg
-  40.04 763.02 m
-  38.82 764.37 l
-  37.76 765.82 l
-  36.86 767.34 l
-  36.13 768.94 l
-  35.56 770.58 l
-  35.15 772.26 l
-  34.91 773.98 l
-  34.82 775.70 l
-  34.91 777.42 l
-  35.15 779.13 l
-  35.56 780.82 l
-  36.13 782.46 l
-  36.86 784.05 l
-  37.76 785.58 l
-  38.82 787.03 l
-  40.04 788.38 l
-  41.40 789.61 l
-  42.85 790.67 l
-  44.37 791.56 l
-  45.96 792.30 l
-  47.61 792.87 l
-  49.29 793.28 l
-  51.00 793.52 l
-  52.73 793.60 l
-  54.45 793.52 l
-  56.16 793.28 l
-  57.84 792.87 l
-  59.49 792.30 l
-  61.08 791.56 l
-  62.61 790.67 l
-  64.06 789.61 l
-  65.41 788.38 l
-  66.63 787.03 l
-  67.69 785.58 l
-  68.59 784.05 l
-  69.32 782.46 l
-  69.89 780.82 l
-  70.30 779.13 l
-  70.55 777.42 l
-  70.63 775.70 l
-  70.55 773.98 l
-  70.30 772.26 l
-  69.89 770.58 l
-  69.32 768.94 l
-  68.59 767.34 l
-  67.69 765.82 l
-  66.63 764.37 l
-  65.41 763.02 l
-  64.06 761.79 l
-  62.61 760.73 l
-  61.08 759.84 l
-  59.49 759.10 l
-  57.84 758.53 l
-  56.16 758.12 l
-  54.45 757.88 l
-  52.73 757.80 l
-  51.00 757.88 l
-  49.29 758.12 l
-  47.61 758.53 l
-  45.96 759.10 l
-  44.37 759.84 l
-  42.85 760.73 l
-  41.40 761.79 l
-  40.04 763.02 l
-  40.04 763.02 l
-h f
-Q q
-0.631 0.914 0.984 rg
-  69.62 773.25 m
-  69.56 771.86 l
-  69.36 770.48 l
-  69.03 769.12 l
-  68.57 767.79 l
-  67.98 766.51 l
-  67.25 765.28 l
-  66.40 764.11 l
-  65.41 763.02 l
-  64.32 762.03 l
-  63.15 761.17 l
-  61.92 760.45 l
-  60.63 759.86 l
-  59.30 759.40 l
-  57.95 759.07 l
-  56.57 758.87 l
-  55.17 758.80 l
-  53.78 758.87 l
-  52.40 759.07 l
-  51.04 759.40 l
-  49.72 759.86 l
-  48.43 760.45 l
-  47.20 761.17 l
-  46.03 762.03 l
-  44.94 763.02 l
-  43.95 764.11 l
-  43.10 765.28 l
-  42.37 766.51 l
-  41.78 767.79 l
-  41.32 769.12 l
-  40.99 770.48 l
-  40.79 771.86 l
-  40.73 773.25 l
-  40.79 774.64 l
-  40.99 776.02 l
-  41.32 777.38 l
-  41.78 778.71 l
-  42.37 779.99 l
-  43.10 781.23 l
-  43.95 782.39 l
-  44.94 783.49 l
-  46.03 784.47 l
-  47.20 785.33 l
-  48.43 786.05 l
-  49.72 786.65 l
-  51.04 787.11 l
-  52.40 787.44 l
-  53.78 787.63 l
-  55.17 787.70 l
-  56.57 787.63 l
-  57.95 787.44 l
-  59.30 787.11 l
-  60.63 786.65 l
-  61.92 786.05 l
-  63.15 785.33 l
-  64.32 784.47 l
-  65.41 783.49 l
-  66.40 782.39 l
-  67.25 781.23 l
-  67.98 779.99 l
-  68.57 778.71 l
-  69.03 777.38 l
-  69.36 776.02 l
-  69.56 774.64 l
-  69.62 773.25 l
-  69.62 773.25 l
-h f
-Q q
-0.345 0.776 0.988 rg
-  68.61 770.80 m
-  68.41 768.70 l
-  67.81 766.65 l
-  66.81 764.74 l
-  65.41 763.02 l
-  63.69 761.61 l
-  61.77 760.61 l
-  59.73 760.01 l
-  57.62 759.81 l
-  55.51 760.01 l
-  53.47 760.61 l
-  51.55 761.61 l
-  49.83 763.02 l
-  48.43 764.74 l
-  47.43 766.65 l
-  46.83 768.70 l
-  46.63 770.80 l
-  46.83 772.91 l
-  47.43 774.96 l
-  48.43 776.87 l
-  49.83 778.59 l
-  51.55 779.99 l
-  53.47 781.00 l
-  55.51 781.60 l
-  57.62 781.80 l
-  59.73 781.60 l
-  61.77 781.00 l
-  63.69 779.99 l
-  65.41 778.59 l
-  66.81 776.87 l
-  67.81 774.96 l
-  68.41 772.91 l
-  68.61 770.80 l
-  68.61 770.80 l
-h f
-Q q
-0.180 0.541 1.000 rg
-  54.73 763.02 m
-  53.77 764.20 l
-  53.08 765.51 l
-  52.67 766.91 l
-  52.53 768.36 l
-  52.67 769.80 l
-  53.08 771.20 l
-  53.77 772.52 l
-  54.73 773.70 l
-  55.91 774.66 l
-  57.22 775.35 l
-  58.62 775.76 l
-  60.07 775.89 l
-  61.52 775.76 l
-  62.92 775.35 l
-  64.23 774.66 l
-  65.41 773.70 l
-  66.37 772.52 l
-  67.06 771.20 l
-  67.47 769.80 l
-  67.61 768.36 l
-  67.47 766.91 l
-  67.06 765.51 l
-  66.37 764.20 l
-  65.41 763.02 l
-  64.23 762.05 l
-  62.92 761.37 l
-  61.52 760.96 l
-  60.07 760.82 l
-  58.62 760.96 l
-  57.22 761.37 l
-  55.91 762.05 l
-  54.73 763.02 l
-  54.73 763.02 l
-h f
-Q q
-0.839 0.961 0.961 rg
-  65.37 725.22 m
-  64.02 724.00 l
-  62.57 722.94 l
-  61.05 722.04 l
-  59.45 721.31 l
-  57.81 720.74 l
-  56.13 720.33 l
-  54.41 720.08 l
-  52.69 720.00 l
-  50.97 720.08 l
-  49.26 720.33 l
-  47.57 720.74 l
-  45.93 721.31 l
-  44.34 722.04 l
-  42.81 722.94 l
-  41.36 724.00 l
-  40.01 725.22 l
-  38.78 726.57 l
-  37.72 728.02 l
-  36.83 729.55 l
-  36.09 731.14 l
-  35.52 732.79 l
-  35.12 734.47 l
-  34.87 736.18 l
-  34.79 737.90 l
-  34.87 739.63 l
-  35.12 741.34 l
-  35.52 743.02 l
-  36.09 744.67 l
-  36.83 746.26 l
-  37.72 747.79 l
-  38.78 749.23 l
-  40.01 750.59 l
-  41.36 751.81 l
-  42.81 752.87 l
-  44.34 753.77 l
-  45.93 754.50 l
-  47.57 755.07 l
-  49.26 755.48 l
-  50.97 755.72 l
-  52.69 755.81 l
-  54.41 755.72 l
-  56.13 755.48 l
-  57.81 755.07 l
-  59.45 754.50 l
-  61.05 753.77 l
-  62.57 752.87 l
-  64.02 751.81 l
-  65.37 750.59 l
-  66.60 749.23 l
-  67.66 747.79 l
-  68.56 746.26 l
-  69.29 744.67 l
-  69.86 743.02 l
-  70.27 741.34 l
-  70.51 739.63 l
-  70.59 737.90 l
-  70.51 736.18 l
-  70.27 734.47 l
-  69.86 732.79 l
-  69.29 731.14 l
-  68.56 729.55 l
-  67.66 728.02 l
-  66.60 726.57 l
-  65.37 725.22 l
-  65.37 725.22 l
-h f
-Q q
-0.631 0.914 0.984 rg
-  55.14 754.80 m
-  56.53 754.73 l
-  57.91 754.54 l
-  59.27 754.21 l
-  60.60 753.75 l
-  61.88 753.15 l
-  63.11 752.43 l
-  64.28 751.57 l
-  65.37 750.59 l
-  66.36 749.49 l
-  67.22 748.33 l
-  67.94 747.09 l
-  68.53 745.81 l
-  68.99 744.48 l
-  69.32 743.12 l
-  69.52 741.74 l
-  69.59 740.35 l
-  69.52 738.96 l
-  69.32 737.58 l
-  68.99 736.22 l
-  68.53 734.89 l
-  67.94 733.61 l
-  67.22 732.38 l
-  66.36 731.21 l
-  65.37 730.12 l
-  64.28 729.13 l
-  63.11 728.27 l
-  61.88 727.55 l
-  60.60 726.96 l
-  59.27 726.50 l
-  57.91 726.17 l
-  56.53 725.97 l
-  55.14 725.90 l
-  53.75 725.97 l
-  52.37 726.17 l
-  51.01 726.50 l
-  49.68 726.96 l
-  48.40 727.55 l
-  47.16 728.27 l
-  46.00 729.13 l
-  44.90 730.12 l
-  43.92 731.21 l
-  43.06 732.38 l
-  42.34 733.61 l
-  41.74 734.89 l
-  41.28 736.22 l
-  40.95 737.58 l
-  40.76 738.96 l
-  40.69 740.35 l
-  40.76 741.74 l
-  40.95 743.12 l
-  41.28 744.48 l
-  41.74 745.81 l
-  42.34 747.09 l
-  43.06 748.33 l
-  43.92 749.49 l
-  44.90 750.59 l
-  46.00 751.57 l
-  47.16 752.43 l
-  48.40 753.15 l
-  49.68 753.75 l
-  51.01 754.21 l
-  52.37 754.54 l
-  53.75 754.73 l
-  55.14 754.80 l
-  55.14 754.80 l
-h f
-Q q
-0.345 0.776 0.988 rg
-  57.59 753.79 m
-  59.70 753.59 l
-  61.74 752.99 l
-  63.65 751.99 l
-  65.37 750.59 l
-  66.78 748.87 l
-  67.78 746.95 l
-  68.38 744.91 l
-  68.58 742.80 l
-  68.38 740.69 l
-  67.78 738.65 l
-  66.78 736.73 l
-  65.37 735.01 l
-  63.65 733.61 l
-  61.74 732.61 l
-  59.70 732.01 l
-  57.59 731.81 l
-  55.48 732.01 l
-  53.43 732.61 l
-  51.52 733.61 l
-  49.80 735.01 l
-  48.40 736.73 l
-  47.39 738.65 l
-  46.79 740.69 l
-  46.59 742.80 l
-  46.79 744.91 l
-  47.39 746.95 l
-  48.40 748.87 l
-  49.80 750.59 l
-  51.52 751.99 l
-  53.43 752.99 l
-  55.48 753.59 l
-  57.59 753.79 l
-  57.59 753.79 l
-h f
-Q q
-0.180 0.541 1.000 rg
-  65.37 739.91 m
-  64.19 738.94 l
-  62.88 738.26 l
-  61.48 737.85 l
-  60.03 737.71 l
-  58.59 737.85 l
-  57.19 738.26 l
-  55.87 738.94 l
-  54.69 739.91 l
-  53.73 741.09 l
-  53.05 742.40 l
-  52.63 743.80 l
-  52.50 745.25 l
-  52.63 746.69 l
-  53.05 748.09 l
-  53.73 749.41 l
-  54.69 750.59 l
-  55.87 751.55 l
-  57.19 752.24 l
-  58.59 752.65 l
-  60.03 752.78 l
-  61.48 752.65 l
-  62.88 752.24 l
-  64.19 751.55 l
-  65.37 750.59 l
-  66.34 749.41 l
-  67.02 748.09 l
-  67.44 746.69 l
-  67.57 745.25 l
-  67.44 743.80 l
-  67.02 742.40 l
-  66.34 741.09 l
-  65.37 739.91 l
-  65.37 739.91 l
-h f
-Q q
-0.839 0.961 0.961 rg
-  103.04 750.59 m
-  104.26 749.23 l
-  105.32 747.79 l
-  106.22 746.26 l
-  106.95 744.67 l
-  107.52 743.02 l
-  107.93 741.34 l
-  108.18 739.63 l
-  108.26 737.90 l
-  108.18 736.18 l
-  107.93 734.47 l
-  107.52 732.79 l
-  106.95 731.14 l
-  106.22 729.55 l
-  105.32 728.02 l
-  104.26 726.57 l
-  103.04 725.22 l
-  101.68 724.00 l
-  100.24 722.94 l
-  98.71 722.04 l
-  97.12 721.31 l
-  95.47 720.74 l
-  93.79 720.33 l
-  92.08 720.08 l
-  90.35 720.00 l
-  88.63 720.08 l
-  86.92 720.33 l
-  85.24 720.74 l
-  83.59 721.31 l
-  82.00 722.04 l
-  80.47 722.94 l
-  79.03 724.00 l
-  77.67 725.22 l
-  76.45 726.57 l
-  75.39 728.02 l
-  74.49 729.55 l
-  73.76 731.14 l
-  73.19 732.79 l
-  72.78 734.47 l
-  72.53 736.18 l
-  72.45 737.90 l
-  72.53 739.63 l
-  72.78 741.34 l
-  73.19 743.02 l
-  73.76 744.67 l
-  74.49 746.26 l
-  75.39 747.79 l
-  76.45 749.23 l
[TRUNCATED]

To get the complete diff run:
    svnlook diff /svnroot/seqinr -r 1697


More information about the Seqinr-commits mailing list