[Seqinr-commits] r1600 - www

noreply at r-forge.r-project.org noreply at r-forge.r-project.org
Sun Apr 26 10:56:31 CEST 2009


Author: lobry
Date: 2009-04-26 10:56:30 +0200 (Sun, 26 Apr 2009)
New Revision: 1600

Added:
   www/seqinr_2_0-3.pdf
Log:
add new version 2.0-3

Added: www/seqinr_2_0-3.pdf
===================================================================
--- www/seqinr_2_0-3.pdf	                        (rev 0)
+++ www/seqinr_2_0-3.pdf	2009-04-26 08:56:30 UTC (rev 1600)
@@ -0,0 +1,201080 @@
+%PDF-1.4
+%ÐÔÅØ
+5 0 obj
+<< /S /GoTo /D (part.1) >>
+endobj
+8 0 obj
+(I Frontmatter)
+endobj
+9 0 obj
+<< /S /GoTo /D (chapter.1) >>
+endobj
+12 0 obj
+(Licence of this document)
+endobj
+13 0 obj
+<< /S /GoTo /D (part.2) >>
+endobj
+16 0 obj
+(II Mainmatter)
+endobj
+17 0 obj
+<< /S /GoTo /D (chapter.2) >>
+endobj
+20 0 obj
+(Introduction)
+endobj
+21 0 obj
+<< /S /GoTo /D (section.2.1) >>
+endobj
+24 0 obj
+(About ACNUC)
+endobj
+25 0 obj
+<< /S /GoTo /D (section.2.2) >>
+endobj
+28 0 obj
+(About R and CRAN)
+endobj
+29 0 obj
+<< /S /GoTo /D (section.2.3) >>
+endobj
+32 0 obj
+(About this document)
+endobj
+33 0 obj
+<< /S /GoTo /D (section.2.4) >>
+endobj
+36 0 obj
+(About sequin and seqinR)
+endobj
+37 0 obj
+<< /S /GoTo /D (section.2.5) >>
+endobj
+40 0 obj
+(About getting started)
+endobj
+41 0 obj
+<< /S /GoTo /D (section.2.6) >>
+endobj
+44 0 obj
+(About running R in batch mode)
+endobj
+45 0 obj
+<< /S /GoTo /D (section.2.7) >>
+endobj
+48 0 obj
+(About the learning curve)
+endobj
+49 0 obj
+<< /S /GoTo /D (subsection.2.7.1) >>
+endobj
+52 0 obj
+(Wheel \(the\))
+endobj
+53 0 obj
+<< /S /GoTo /D (subsection.2.7.2) >>
+endobj
+56 0 obj
+(Hotline)
+endobj
+57 0 obj
+<< /S /GoTo /D (subsection.2.7.3) >>
+endobj
+60 0 obj
+(Automation)
+endobj
+61 0 obj
+<< /S /GoTo /D (subsection.2.7.4) >>
+endobj
+64 0 obj
+(Reproducibility)
+endobj
+65 0 obj
+<< /S /GoTo /D (subsection.2.7.5) >>
+endobj
+68 0 obj
+(Fine tuning)
+endobj
+69 0 obj
+<< /S /GoTo /D (subsection.2.7.6) >>
+endobj
+72 0 obj
+(Data as fast moving targets)
+endobj
+73 0 obj
+<< /S /GoTo /D (subsection.2.7.7) >>
+endobj
+76 0 obj
+(Sweave\(\) and xtable\(\))
+endobj
+77 0 obj
+<< /S /GoTo /D (chapter.3) >>
+endobj
+80 0 obj
+(Importing sequences from flat files)
+endobj
+81 0 obj
+<< /S /GoTo /D (section.3.1) >>
+endobj
+84 0 obj
+(Importing raw sequence data from FASTA files)
+endobj
+85 0 obj
+<< /S /GoTo /D (subsection.3.1.1) >>
+endobj
+88 0 obj
+(FASTA files examples)
+endobj
+89 0 obj
+<< /S /GoTo /D (subsection.3.1.2) >>
+endobj
+92 0 obj
+(The function read.fasta\(\))
+endobj
+93 0 obj
+<< /S /GoTo /D (subsection.3.1.3) >>
+endobj
+96 0 obj
+(The function write.fasta\(\))
+endobj
+97 0 obj
+<< /S /GoTo /D (subsection.3.1.4) >>
+endobj
+100 0 obj
+(Big room examples)
+endobj
+101 0 obj
+<< /S /GoTo /D (section.3.2) >>
+endobj
+104 0 obj
+(Importing aligned sequence data)
+endobj
+105 0 obj
+<< /S /GoTo /D (subsection.3.2.1) >>
+endobj
+108 0 obj
+(Aligned sequences files examples)
+endobj
+109 0 obj
+<< /S /GoTo /D (subsection.3.2.2) >>
+endobj
+112 0 obj
+(The function read.alignment\(\))
+endobj
+113 0 obj
+<< /S /GoTo /D (subsection.3.2.3) >>
+endobj
+116 0 obj
+(A simple example with the louse-gopher data)
+endobj
+117 0 obj
+<< /S /GoTo /D (chapter.4) >>
+endobj
+120 0 obj
+(Importing sequences from ACNUC databases)
+endobj
+121 0 obj
+<< /S /GoTo /D (section.4.1) >>
+endobj
+124 0 obj
+(Choose a bank)
+endobj
+125 0 obj
+<< /S /GoTo /D (section.4.2) >>
+endobj
+128 0 obj
+(Make your query)
+endobj
+129 0 obj
+<< /S /GoTo /D (section.4.3) >>
+endobj
+132 0 obj
+(Extract sequences of interest)
+endobj
+133 0 obj
+<< /S /GoTo /D (subsection.4.3.1) >>
+endobj
+136 0 obj
+(Introduction)
+endobj
+137 0 obj
+<< /S /GoTo /D (subsection.4.3.2) >>
+endobj
+140 0 obj
+(Extacting sequences with getSequence\(\))
+endobj
+141 0 obj
+<< /S /GoTo /D (subsection.4.3.3) >>
+endobj
+144 0 obj
+(Extracting sequences with trans-splicing)
+endobj
+145 0 obj
+<< /S /GoTo /D (subsection.4.3.4) >>
+endobj
+148 0 obj
+(Extracting sequences from many entries)
+endobj
+149 0 obj
+<< /S /GoTo /D (chapter.5) >>
+endobj
+152 0 obj
+(The query language)
+endobj
+153 0 obj
+<< /S /GoTo /D (section.5.1) >>
+endobj
+156 0 obj
+(Where to find information)
+endobj
+157 0 obj
+<< /S /GoTo /D (section.5.2) >>
+endobj
+160 0 obj
+(Case sensitivity and ambiguities resolution)
+endobj
+161 0 obj
+<< /S /GoTo /D (section.5.3) >>
+endobj
+164 0 obj
+(Selection criteria)
+endobj
+165 0 obj
+<< /S /GoTo /D (subsection.5.3.1) >>
+endobj
+168 0 obj
+(Introduction)
+endobj
+169 0 obj
+<< /S /GoTo /D (subsection.5.3.2) >>
+endobj
+172 0 obj
+(SP=taxon)
+endobj
+173 0 obj
+<< /S /GoTo /D (subsection.5.3.3) >>
+endobj
+176 0 obj
+(TID=id)
+endobj
+177 0 obj
+<< /S /GoTo /D (subsection.5.3.4) >>
+endobj
+180 0 obj
+(K=keyword)
+endobj
+181 0 obj
+<< /S /GoTo /D (subsection.5.3.5) >>
+endobj
+184 0 obj
+(T=type)
+endobj
+185 0 obj
+<< /S /GoTo /D (subsection.5.3.6) >>
+endobj
+188 0 obj
+(J=journal\137name)
+endobj
+189 0 obj
+<< /S /GoTo /D (subsection.5.3.7) >>
+endobj
+192 0 obj
+(R=refcode)
+endobj
+193 0 obj
+<< /S /GoTo /D (subsection.5.3.8) >>
+endobj
+196 0 obj
+(AU=name)
+endobj
+197 0 obj
+<< /S /GoTo /D (subsection.5.3.9) >>
+endobj
+200 0 obj
+(AC=accession\137no)
+endobj
+201 0 obj
+<< /S /GoTo /D (subsection.5.3.10) >>
+endobj
+204 0 obj
+(N=seq\137name)
+endobj
+205 0 obj
+<< /S /GoTo /D (subsection.5.3.11) >>
+endobj
+208 0 obj
+(Y=year or Y>year or Y<year)
+endobj
+209 0 obj
+<< /S /GoTo /D (subsection.5.3.12) >>
+endobj
+212 0 obj
+(O=organelle)
+endobj
+213 0 obj
+<< /S /GoTo /D (subsection.5.3.13) >>
+endobj
+216 0 obj
+(M=molecule)
+endobj
+217 0 obj
+<< /S /GoTo /D (subsection.5.3.14) >>
+endobj
+220 0 obj
+(ST=status)
+endobj
+221 0 obj
+<< /S /GoTo /D (subsection.5.3.15) >>
+endobj
+224 0 obj
+(F=file\137name)
+endobj
+225 0 obj
+<< /S /GoTo /D (subsection.5.3.16) >>
+endobj
+228 0 obj
+(FA=file\137name)
+endobj
+229 0 obj
+<< /S /GoTo /D (subsection.5.3.17) >>
+endobj
+232 0 obj
+(FK=file\137name)
+endobj
+233 0 obj
+<< /S /GoTo /D (subsection.5.3.18) >>
+endobj
+236 0 obj
+(FS=file\137name)
+endobj
+237 0 obj
+<< /S /GoTo /D (subsection.5.3.19) >>
+endobj
+240 0 obj
+(list\137name)
+endobj
+241 0 obj
+<< /S /GoTo /D (section.5.4) >>
+endobj
+244 0 obj
+(Operators)
+endobj
+245 0 obj
+<< /S /GoTo /D (subsection.5.4.1) >>
+endobj
+248 0 obj
+(AND)
+endobj
+249 0 obj
+<< /S /GoTo /D (subsection.5.4.2) >>
+endobj
+252 0 obj
+(OR)
+endobj
+253 0 obj
+<< /S /GoTo /D (subsection.5.4.3) >>
+endobj
+256 0 obj
+(NOT)
+endobj
+257 0 obj
+<< /S /GoTo /D (subsection.5.4.4) >>
+endobj
+260 0 obj
+(PAR)
+endobj
+261 0 obj
+<< /S /GoTo /D (subsection.5.4.5) >>
+endobj
+264 0 obj
+(SUB)
+endobj
+265 0 obj
+<< /S /GoTo /D (subsection.5.4.6) >>
+endobj
+268 0 obj
+(PS)
+endobj
+269 0 obj
+<< /S /GoTo /D (subsection.5.4.7) >>
+endobj
+272 0 obj
+(PK)
+endobj
+273 0 obj
+<< /S /GoTo /D (subsection.5.4.8) >>
+endobj
+276 0 obj
+(UN)
+endobj
+277 0 obj
+<< /S /GoTo /D (subsection.5.4.9) >>
+endobj
+280 0 obj
+(SD)
+endobj
+281 0 obj
+<< /S /GoTo /D (subsection.5.4.10) >>
+endobj
+284 0 obj
+(KD)
+endobj
+285 0 obj
+<< /S /GoTo /D (chapter.6) >>
+endobj
+288 0 obj
+(Importing zlib-compressed sequences)
+endobj
+289 0 obj
+<< /S /GoTo /D (section.6.1) >>
+endobj
+292 0 obj
+(Introduction)
+endobj
+293 0 obj
+<< /S /GoTo /D (section.6.2) >>
+endobj
+296 0 obj
+(Extacting 78,573 complete human nuclear CDS)
+endobj
+297 0 obj
+<< /S /GoTo /D (section.6.3) >>
+endobj
+300 0 obj
+(Extacting 78,573 complete human nuclear Proteins)
+endobj
+301 0 obj
+<< /S /GoTo /D (section.6.4) >>
+endobj
+304 0 obj
+(Sanity check)
+endobj
+305 0 obj
+<< /S /GoTo /D (chapter.7) >>
+endobj
+308 0 obj
+(How to deal with sequences)
+endobj
+309 0 obj
+<< /S /GoTo /D (section.7.1) >>
+endobj
+312 0 obj
+(Sequence classes)
+endobj
+313 0 obj
+<< /S /GoTo /D (section.7.2) >>
+endobj
+316 0 obj
+(Generic methods for sequences)
+endobj
+317 0 obj
+<< /S /GoTo /D (subsection.7.2.1) >>
+endobj
+320 0 obj
+(From classes to methods)
+endobj
+321 0 obj
+<< /S /GoTo /D (subsection.7.2.2) >>
+endobj
+324 0 obj
+(From methods to classes)
+endobj
+325 0 obj
+<< /S /GoTo /D (section.7.3) >>
+endobj
+328 0 obj
+(Internal representation of sequences)
+endobj
+329 0 obj
+<< /S /GoTo /D (subsection.7.3.1) >>
+endobj
+332 0 obj
+(Sequences as vectors of characters)
+endobj
+333 0 obj
+<< /S /GoTo /D (subsection.7.3.2) >>
+endobj
+336 0 obj
+(Sequences as strings)
+endobj
+337 0 obj
+<< /S /GoTo /D (chapter.8) >>
+endobj
+340 0 obj
+(Installation of a local ACNUC socket server and of a local ACNUC database on your machine.)
+endobj
+341 0 obj
+<< /S /GoTo /D (section.8.1) >>
+endobj
+344 0 obj
+(Introduction)
+endobj
+345 0 obj
+<< /S /GoTo /D (section.8.2) >>
+endobj
+348 0 obj
+(System requirement)
+endobj
+349 0 obj
+<< /S /GoTo /D (section.8.3) >>
+endobj
+352 0 obj
+(Setting a local ACNUC database to be queried by the server)
+endobj
+353 0 obj
+<< /S /GoTo /D (section.8.4) >>
+endobj
+356 0 obj
+(Build the ACNUC sockets server from the sources.)
+endobj
+357 0 obj
+<< /S /GoTo /D (subsection.8.4.1) >>
+endobj
+360 0 obj
+(Download the sources.)
+endobj
+361 0 obj
+<< /S /GoTo /D (subsection.8.4.2) >>
+endobj
+364 0 obj
+(Build the ACNUC sockets server.)
+endobj
+365 0 obj
+<< /S /GoTo /D (subsection.8.4.3) >>
+endobj
+368 0 obj
+(Setting the ACNUC sockets server.)
+endobj
+369 0 obj
+<< /S /GoTo /D (subsection.8.4.4) >>
+endobj
+372 0 obj
+(Using seqinR to query your local socket server.)
+endobj
+373 0 obj
+<< /S /GoTo /D (section.8.5) >>
+endobj
+376 0 obj
+(Building your own ACNUC database.)
+endobj
+377 0 obj
+<< /S /GoTo /D (subsection.8.5.1) >>
+endobj
+380 0 obj
+(Database flatfiles formats.)
+endobj
+381 0 obj
+<< /S /GoTo /D (subsection.8.5.2) >>
+endobj
+384 0 obj
+(Download the ACNUC dababase management tools.)
+endobj
+385 0 obj
+<< /S /GoTo /D (subsection.8.5.3) >>
+endobj
+388 0 obj
+(Install the ACNUC dababase management tools.)
+endobj
+389 0 obj
+<< /S /GoTo /D (subsection.8.5.4) >>
+endobj
+392 0 obj
+(Database building : index generation)
+endobj
+393 0 obj
+<< /S /GoTo /D (section.8.6) >>
+endobj
+396 0 obj
+(Misc)
+endobj
+397 0 obj
+<< /S /GoTo /D (subsection.8.6.1) >>
+endobj
+400 0 obj
+(Other tools for acnuc)
+endobj
+401 0 obj
+<< /S /GoTo /D (section.8.7) >>
+endobj
+404 0 obj
+(Technical description of the racnucd daemon)
+endobj
+405 0 obj
+<< /S /GoTo /D (section.8.8) >>
+endobj
+408 0 obj
+(ACNUC remote access protocol)
+endobj
+409 0 obj
+<< /S /GoTo /D (section.8.9) >>
+endobj
+412 0 obj
+(Citation)
+endobj
+413 0 obj
+<< /S /GoTo /D (chapter.9) >>
+endobj
+416 0 obj
+(Multivariate analyses)
+endobj
+417 0 obj
+<< /S /GoTo /D (section.9.1) >>
+endobj
+420 0 obj
+(Correspondence analysis)
+endobj
+421 0 obj
+<< /S /GoTo /D (section.9.2) >>
+endobj
+424 0 obj
+(Synonymous and non-synonymous analyses)
+endobj
+425 0 obj
+<< /S /GoTo /D (chapter.10) >>
+endobj
+428 0 obj
+(Nonparametric statistics)
+endobj
+429 0 obj
+<< /S /GoTo /D (section.10.1) >>
+endobj
+432 0 obj
+(Introduction)
+endobj
+433 0 obj
+<< /S /GoTo /D (section.10.2) >>
+endobj
+436 0 obj
+(Elementary nonparametric statistics)
+endobj
+437 0 obj
+<< /S /GoTo /D (subsection.10.2.1) >>
+endobj
+440 0 obj
+(Introduction)
+endobj
+441 0 obj
+<< /S /GoTo /D (subsection.10.2.2) >>
+endobj
+444 0 obj
+(Rank sum)
+endobj
+445 0 obj
+<< /S /GoTo /D (subsection.10.2.3) >>
+endobj
+448 0 obj
+(Rank variance)
+endobj
+449 0 obj
+<< /S /GoTo /D (subsection.10.2.4) >>
+endobj
+452 0 obj
+(Clustering around the observed centre)
+endobj
+453 0 obj
+<< /S /GoTo /D (subsection.10.2.5) >>
+endobj
+456 0 obj
+(Number of runs)
+endobj
+457 0 obj
+<< /S /GoTo /D (subsection.10.2.6) >>
+endobj
+460 0 obj
+(Multiple clusters)
+endobj
+461 0 obj
+<< /S /GoTo /D (section.10.3) >>
+endobj
+464 0 obj
+(Dinucleotides over- and under-representation)
+endobj
+465 0 obj
+<< /S /GoTo /D (subsection.10.3.1) >>
+endobj
+468 0 obj
+(Introduction)
+endobj
+469 0 obj
+<< /S /GoTo /D (subsection.10.3.2) >>
+endobj
+472 0 obj
+(The rho statistic)
+endobj
+473 0 obj
+<< /S /GoTo /D (subsection.10.3.3) >>
+endobj
+476 0 obj
+(The z-score statistic)
+endobj
+477 0 obj
+<< /S /GoTo /D (subsection.10.3.4) >>
+endobj
+480 0 obj
+(Comparing statistics on a sequence)
+endobj
+481 0 obj
+<< /S /GoTo /D (section.10.4) >>
+endobj
+484 0 obj
+(UV exposure and dinucleotide content)
+endobj
+485 0 obj
+<< /S /GoTo /D (subsection.10.4.1) >>
+endobj
+488 0 obj
+(The expected impact of UV light on genomic content)
+endobj
+489 0 obj
+<< /S /GoTo /D (subsection.10.4.2) >>
+endobj
+492 0 obj
+(The measured impact of UV light on genomic content)
+endobj
+493 0 obj
+<< /S /GoTo /D (chapter.11) >>
+endobj
+496 0 obj
+(RISA in silico with seqinR)
+endobj
+497 0 obj
+<< /S /GoTo /D (section.11.1) >>
+endobj
+500 0 obj
+(Introduction)
+endobj
+501 0 obj
+<< /S /GoTo /D (section.11.2) >>
+endobj
+504 0 obj
+(The primers)
+endobj
+505 0 obj
+<< /S /GoTo /D (section.11.3) >>
+endobj
+508 0 obj
+(Finding a primer location)
+endobj
+509 0 obj
+<< /S /GoTo /D (section.11.4) >>
+endobj
+512 0 obj
+(Compute the length of the intergenic space)
+endobj
+513 0 obj
+<< /S /GoTo /D (section.11.5) >>
+endobj
+516 0 obj
+(Compute IGS for a sequence fragment)
+endobj
+517 0 obj
+<< /S /GoTo /D (section.11.6) >>
+endobj
+520 0 obj
+(Compute IGS for a species)
+endobj
+521 0 obj
+<< /S /GoTo /D (section.11.7) >>
+endobj
+524 0 obj
+(Loop over many species)
+endobj
+525 0 obj
+<< /S /GoTo /D (subsection.11.7.1) >>
+endobj
+528 0 obj
+(Preprocessing: select interesting species)
+endobj
+529 0 obj
+<< /S /GoTo /D (subsection.11.7.2) >>
+endobj
+532 0 obj
+(Loop over our specie list)
+endobj
+533 0 obj
+<< /S /GoTo /D (section.11.8) >>
+endobj
+536 0 obj
+(Playing with results)
+endobj
+537 0 obj
+<< /S /GoTo /D (part.3) >>
+endobj
+540 0 obj
+(III Appendix)
+endobj
+541 0 obj
+<< /S /GoTo /D (chapter.12) >>
+endobj
+544 0 obj
+(FAQ: Frequently Asked Questions)
+endobj
+545 0 obj
+<< /S /GoTo /D (section.12.1) >>
+endobj
+548 0 obj
+(How can I compute a score over a moving window?)
+endobj
+549 0 obj
+<< /S /GoTo /D (section.12.2) >>
+endobj
+552 0 obj
+(How can I extract just a fragment from my sequence?)
+endobj
+553 0 obj
+<< /S /GoTo /D (section.12.3) >>
+endobj
+556 0 obj
+(How do I compute a score on my sequences?)
+endobj
+557 0 obj
+<< /S /GoTo /D (section.12.4) >>
+endobj
+560 0 obj
+(Why do I have not exactly the same G+C content as in codonW?)
+endobj
+561 0 obj
+<< /S /GoTo /D (section.12.5) >>
+endobj
+564 0 obj
+(How do I get a sequence from its name?)
+endobj
+565 0 obj
+<< /S /GoTo /D (chapter.13) >>
+endobj
+568 0 obj
+(GNU Free Documentation License)
+endobj
+569 0 obj
+<< /S /GoTo /D (section.13.1) >>
+endobj
+572 0 obj
+(APPLICABILITY AND DEFINITIONS)
+endobj
+573 0 obj
+<< /S /GoTo /D (section.13.2) >>
+endobj
+576 0 obj
+(VERBATIM COPYING)
+endobj
+577 0 obj
+<< /S /GoTo /D (section.13.3) >>
+endobj
+580 0 obj
+( COPYING IN QUANTITY)
+endobj
+581 0 obj
+<< /S /GoTo /D (section.13.4) >>
+endobj
+584 0 obj
+(MODIFICATIONS)
+endobj
+585 0 obj
+<< /S /GoTo /D (section.13.5) >>
+endobj
+588 0 obj
+(COMBINING DOCUMENTS)
+endobj
+589 0 obj
+<< /S /GoTo /D (section.13.6) >>
+endobj
+592 0 obj
+(COLLECTIONS OF DOCUMENTS)
+endobj
+593 0 obj
+<< /S /GoTo /D (section.13.7) >>
+endobj
+596 0 obj
+(AGGREGATION WITH INDEPENDENT WORKS)
+endobj
+597 0 obj
+<< /S /GoTo /D (section.13.8) >>
+endobj
+600 0 obj
+(TRANSLATION)
+endobj
+601 0 obj
+<< /S /GoTo /D (section.13.9) >>
+endobj
+604 0 obj
+(TERMINATION)
+endobj
+605 0 obj
+<< /S /GoTo /D (section.13.10) >>
+endobj
+608 0 obj
+(FUTURE REVISIONS OF THIS LICENSE)
+endobj
+609 0 obj
+<< /S /GoTo /D (chapter.14) >>
+endobj
+612 0 obj
+(Genetic codes)
+endobj
+613 0 obj
+<< /S /GoTo /D (section.14.1) >>
+endobj
+616 0 obj
+(Standard genetic code)
+endobj
+617 0 obj
+<< /S /GoTo /D (section.14.2) >>
+endobj
+620 0 obj
+(Available genetic code numbers)
+endobj
+621 0 obj
+<< /S /GoTo /D (chapter.15) >>
+endobj
+624 0 obj
+(Release notes)
+endobj
+625 0 obj
+<< /S /GoTo /D (chapter.16) >>
+endobj
+628 0 obj
+(Test suite: run the don't run)
+endobj
+629 0 obj
+<< /S /GoTo /D (section.16.1) >>
+endobj
+632 0 obj
+(Introduction)
+endobj
+633 0 obj
+<< /S /GoTo /D (section.16.2) >>
+endobj
+636 0 obj
+(Stop list)
+endobj
+637 0 obj
+<< /S /GoTo /D (section.16.3) >>
+endobj
+640 0 obj
+(Figure list)
+endobj
+641 0 obj
+<< /S /GoTo /D (section.16.4) >>
+endobj
+644 0 obj
+(Don't run generator)
+endobj
+645 0 obj
+<< /S /GoTo /D (subsection.16.4.1) >>
+endobj
+648 0 obj
+(GC\(\))
+endobj
+649 0 obj
+<< /S /GoTo /D (subsection.16.4.2) >>
+endobj
+652 0 obj
+(SeqAcnucWeb\(\))
+endobj
+653 0 obj
+<< /S /GoTo /D (subsection.16.4.3) >>
+endobj
+656 0 obj
+(alllistranks\(\))
+endobj
+657 0 obj
+<< /S /GoTo /D (subsection.16.4.4) >>
+endobj
+660 0 obj
+(autosocket\(\))
+endobj
+661 0 obj
+<< /S /GoTo /D (subsection.16.4.5) >>
+endobj
+664 0 obj
+(choosebank\(\))
+endobj
+665 0 obj
+<< /S /GoTo /D (subsection.16.4.6) >>
+endobj
+668 0 obj
+(closebank\(\))
+endobj
+669 0 obj
+<< /S /GoTo /D (subsection.16.4.7) >>
+endobj
+672 0 obj
+(countfreelists\(\))
+endobj
+673 0 obj
+<< /S /GoTo /D (subsection.16.4.8) >>
+endobj
+676 0 obj
+(countsubseqs\(\))
+endobj
+677 0 obj
+<< /S /GoTo /D (subsection.16.4.9) >>
+endobj
+680 0 obj
+(crelistfromclientdata\(\))
+endobj
+681 0 obj
+<< /S /GoTo /D (subsection.16.4.10) >>
+endobj
+684 0 obj
+(dia.bactgensize\(\))
+endobj
+685 0 obj
+<< /S /GoTo /D (subsection.16.4.11) >>
+endobj
+688 0 obj
+(extract.breakpoints\(\))
+endobj
+689 0 obj
+<< /S /GoTo /D (subsection.16.4.12) >>
+endobj
+692 0 obj
+(getAnnot\(\))
+endobj
+693 0 obj
+<< /S /GoTo /D (subsection.16.4.13) >>
+endobj
+696 0 obj
+(getKeyword\(\))
+endobj
+697 0 obj
+<< /S /GoTo /D (subsection.16.4.14) >>
+endobj
+700 0 obj
+(getLength\(\))
+endobj
+701 0 obj
+<< /S /GoTo /D (subsection.16.4.15) >>
+endobj
+704 0 obj
+(getLocation\(\))
+endobj
+705 0 obj
+<< /S /GoTo /D (subsection.16.4.16) >>
+endobj
+708 0 obj
+(getName\(\))
+endobj
+709 0 obj
+<< /S /GoTo /D (subsection.16.4.17) >>
+endobj
+712 0 obj
+(getSequence\(\))
+endobj
+713 0 obj
+<< /S /GoTo /D (subsection.16.4.18) >>
+endobj
+716 0 obj
+(getTrans\(\))
+endobj
+717 0 obj
+<< /S /GoTo /D (subsection.16.4.19) >>
+endobj
+720 0 obj
+(getType\(\))
+endobj
+721 0 obj
+<< /S /GoTo /D (subsection.16.4.20) >>
+endobj
+724 0 obj
+(getlistrank\(\))
+endobj
+725 0 obj
+<< /S /GoTo /D (subsection.16.4.21) >>
+endobj
+728 0 obj
+(getliststate\(\))
+endobj
+729 0 obj
+<< /S /GoTo /D (subsection.16.4.22) >>
+endobj
+732 0 obj
+(gfrag\(\))
+endobj
+733 0 obj
+<< /S /GoTo /D (subsection.16.4.23) >>
+endobj
+736 0 obj
+(ghelp\(\))
+endobj
+737 0 obj
+<< /S /GoTo /D (subsection.16.4.24) >>
+endobj
+740 0 obj
+(isenum\(\))
+endobj
+741 0 obj
+<< /S /GoTo /D (subsection.16.4.25) >>
+endobj
+744 0 obj
+(knowndbs\(\))
+endobj
+745 0 obj
+<< /S /GoTo /D (subsection.16.4.26) >>
+endobj
+748 0 obj
+(oriloc\(\))
+endobj
+749 0 obj
+<< /S /GoTo /D (subsection.16.4.27) >>
+endobj
+752 0 obj
+(prepgatannots\(\))
+endobj
+753 0 obj
+<< /S /GoTo /D (subsection.16.4.28) >>
+endobj
+756 0 obj
+(prettyseq\(\))
+endobj
+757 0 obj
+<< /S /GoTo /D (subsection.16.4.29) >>
+endobj
+760 0 obj
+(print.SeqAcnucWeb\(\))
+endobj
+761 0 obj
+<< /S /GoTo /D (subsection.16.4.30) >>
+endobj
+764 0 obj
+(print.qaw\(\))
+endobj
+765 0 obj
+<< /S /GoTo /D (subsection.16.4.31) >>
+endobj
+768 0 obj
+(query\(\))
+endobj
+769 0 obj
+<< /S /GoTo /D (subsection.16.4.32) >>
+endobj
+772 0 obj
+(readfirstrec\(\))
+endobj
+773 0 obj
+<< /S /GoTo /D (subsection.16.4.33) >>
+endobj
+776 0 obj
+(rearranged.oriloc\(\))
+endobj
+777 0 obj
+<< /S /GoTo /D (subsection.16.4.34) >>
+endobj
+780 0 obj
+(residuecount\(\))
+endobj
+781 0 obj
+<< /S /GoTo /D (subsection.16.4.35) >>
+endobj
+784 0 obj
+(savelist\(\))
+endobj
+785 0 obj
+<< /S /GoTo /D (subsection.16.4.36) >>
+endobj
+788 0 obj
+(setlistname\(\))
+endobj
+789 0 obj
+<< /S /GoTo /D (subsection.16.4.37) >>
+endobj
+792 0 obj
+(translate\(\))
+endobj
+793 0 obj
+<< /S /GoTo /D (chapter.17) >>
+endobj
+796 0 obj
+(Informations about databases available at pbil)
+endobj
+797 0 obj
+<< /S /GoTo /D (section.17.1) >>
+endobj
+800 0 obj
+(Introduction)
+endobj
+801 0 obj
+<< /S /GoTo /D (section.17.2) >>
+endobj
+804 0 obj
+( genbank )
+endobj
+805 0 obj
+<< /S /GoTo /D (section.17.3) >>
+endobj
+808 0 obj
+( embl )
+endobj
+809 0 obj
+<< /S /GoTo /D (section.17.4) >>
+endobj
+812 0 obj
+( emblwgs )
+endobj
+813 0 obj
+<< /S /GoTo /D (section.17.5) >>
+endobj
+816 0 obj
+( swissprot )
+endobj
+817 0 obj
+<< /S /GoTo /D (section.17.6) >>
+endobj
+820 0 obj
+( ensembl )
+endobj
+821 0 obj
+<< /S /GoTo /D (section.17.7) >>
+endobj
+824 0 obj
+( refseq )
+endobj
+825 0 obj
+<< /S /GoTo /D (section.17.8) >>
+endobj
+828 0 obj
+( nrsub )
+endobj
+829 0 obj
+<< /S /GoTo /D (section.17.9) >>
+endobj
+832 0 obj
+( hobacnucl )
+endobj
+833 0 obj
+<< /S /GoTo /D (section.17.10) >>
+endobj
+836 0 obj
+( hobacprot )
+endobj
+837 0 obj
+<< /S /GoTo /D (section.17.11) >>
+endobj
+840 0 obj
+( hovergendna )
+endobj
+841 0 obj
+<< /S /GoTo /D (section.17.12) >>
+endobj
+844 0 obj
+( hovergen )
+endobj
+845 0 obj
+<< /S /GoTo /D (section.17.13) >>
+endobj
+848 0 obj
+( hogenom )
+endobj
+849 0 obj
+<< /S /GoTo /D (section.17.14) >>
+endobj
+852 0 obj
+( hogenomdna )
+endobj
+853 0 obj
+<< /S /GoTo /D (section.17.15) >>
+endobj
+856 0 obj
+( hogennucl )
+endobj
+857 0 obj
+<< /S /GoTo /D (section.17.16) >>
+endobj
+860 0 obj
+( hogenprot )
+endobj
+861 0 obj
+<< /S /GoTo /D (section.17.17) >>
+endobj
+864 0 obj
+( hoverclnu )
+endobj
+865 0 obj
+<< /S /GoTo /D (section.17.18) >>
+endobj
+868 0 obj
+( hoverclpr )
+endobj
+869 0 obj
+<< /S /GoTo /D (section.17.19) >>
+endobj
+872 0 obj
+( homolens3 )
+endobj
+873 0 obj
+<< /S /GoTo /D (section.17.20) >>
+endobj
+876 0 obj
+( homolens3dna )
+endobj
+877 0 obj
+<< /S /GoTo /D (section.17.21) >>
+endobj
+880 0 obj
+( homolens )
+endobj
+881 0 obj
+<< /S /GoTo /D (section.17.22) >>
+endobj
+884 0 obj
+( homolensdna )
+endobj
+885 0 obj
+<< /S /GoTo /D (section.17.23) >>
+endobj
+888 0 obj
+( greview )
+endobj
+889 0 obj
+<< /S /GoTo /D (section.17.24) >>
+endobj
+892 0 obj
+( polymorphix )
+endobj
+893 0 obj
+<< /S /GoTo /D (section.17.25) >>
+endobj
+896 0 obj
+( emglib )
+endobj
+897 0 obj
+<< /S /GoTo /D (section.17.26) >>
+endobj
+900 0 obj
+( HAMAPnucl )
+endobj
+901 0 obj
+<< /S /GoTo /D (section.17.27) >>
+endobj
+904 0 obj
+( HAMAPprot )
+endobj
+905 0 obj
+<< /S /GoTo /D (section.17.28) >>
+endobj
+908 0 obj
+( taxobacgen )
+endobj
+909 0 obj
+<< /S /GoTo /D (section.17.29) >>
+endobj
+912 0 obj
+( apis )
+endobj
+913 0 obj
+<< /S /GoTo /D (section.17.30) >>
+endobj
+916 0 obj
+( human )
+endobj
+917 0 obj
+<< /S /GoTo /D (section.17.31) >>
+endobj
+920 0 obj
+( emblTP )
+endobj
+921 0 obj
+<< /S /GoTo /D (section.17.32) >>
+endobj
+924 0 obj
+( swissprotTP )
+endobj
+925 0 obj
+<< /S /GoTo /D (section.17.33) >>
+endobj
+928 0 obj
+( hoverprotTP )
+endobj
+929 0 obj
+<< /S /GoTo /D (section.17.34) >>
+endobj
+932 0 obj
+( hovernuclTP )
+endobj
+933 0 obj
+<< /S /GoTo /D (section.17.35) >>
+endobj
+936 0 obj
+( trypano )
+endobj
+937 0 obj
+<< /S /GoTo /D (section.17.36) >>
+endobj
+940 0 obj
+( ensembl24 )
+endobj
+941 0 obj
+<< /S /GoTo /D (section.17.37) >>
+endobj
+944 0 obj
+( ensembl34 )
+endobj
+945 0 obj
+<< /S /GoTo /D (section.17.38) >>
+endobj
+948 0 obj
+( ensembl41 )
+endobj
+949 0 obj
+<< /S /GoTo /D (section.17.39) >>
+endobj
+952 0 obj
+( ensembl47 )
+endobj
+953 0 obj
+<< /S /GoTo /D (section.17.40) >>
+endobj
+956 0 obj
+( ensembl49 )
+endobj
+957 0 obj
+<< /S /GoTo /D (section.17.41) >>
+endobj
+960 0 obj
+( macaca45 )
+endobj
+961 0 obj
+<< /S /GoTo /D (section.17.42) >>
+endobj
+964 0 obj
+( dog45 )
+endobj
+965 0 obj
+<< /S /GoTo /D (section.17.43) >>
+endobj
+968 0 obj
+( dog47 )
+endobj
+969 0 obj
+<< /S /GoTo /D (section.17.44) >>
+endobj
+972 0 obj
+( equus49 )
+endobj
+973 0 obj
+<< /S /GoTo /D (section.17.45) >>
+endobj
+976 0 obj
+( pongo49 )
+endobj
+977 0 obj
+<< /S /GoTo /D (section.17.46) >>
+endobj
+980 0 obj
+( rattus49 )
+endobj
+981 0 obj
+<< /S /GoTo /D (section.17.47) >>
+endobj
+984 0 obj
+( mouse38 )
+endobj
+985 0 obj
+<< /S /GoTo /D (section.17.48) >>
+endobj
+988 0 obj
+( homolens4 )
+endobj
+989 0 obj
+<< /S /GoTo /D (section.17.49) >>
+endobj
+992 0 obj
+( homolens4dna )
+endobj
+993 0 obj
+<< /S /GoTo /D (section.17.50) >>
+endobj
+996 0 obj
+( hoppsigen )
+endobj
+997 0 obj
+<< /S /GoTo /D (section.17.51) >>
+endobj
+1000 0 obj
+( nurebnucl )
+endobj
+1001 0 obj
+<< /S /GoTo /D (section.17.52) >>
+endobj
+1004 0 obj
+( nurebprot )
+endobj
+1005 0 obj
+<< /S /GoTo /D (section.17.53) >>
+endobj
+1008 0 obj
+( hogendnucl )
+endobj
+1009 0 obj
+<< /S /GoTo /D (section.17.54) >>
+endobj
+1012 0 obj
+( hogendprot )
+endobj
+1013 0 obj
+<< /S /GoTo /D (section.17.55) >>
+endobj
+1016 0 obj
+( genomicro1 )
+endobj
+1017 0 obj
+<< /S /GoTo /D (section.17.56) >>
+endobj
+1020 0 obj
+( genomicro2 )
+endobj
+1021 0 obj
+<< /S /GoTo /D (section.17.57) >>
+endobj
+1024 0 obj
+( genomicro3 )
+endobj
+1025 0 obj
+<< /S /GoTo /D (section.17.58) >>
+endobj
+1028 0 obj
+( genomicro4 )
+endobj
+1029 0 obj
+<< /S /GoTo /D (section.17.59) >>
+endobj
+1032 0 obj
+( dickeya )
+endobj
+1033 0 obj
+<< /S /GoTo /D (section.17.60) >>
+endobj
+1036 0 obj
+( tetra53 )
+endobj
+1037 0 obj
+<< /S /GoTo /D (section.17.61) >>
+endobj
+1040 0 obj
+( trypanosoma )
+endobj
+1041 0 obj
+<< /S /GoTo /D (chapter*.59) >>
+endobj
+1044 0 obj
+(List of tables)
+endobj
+1045 0 obj
+<< /S /GoTo /D (chapter*.60) >>
+endobj
+1048 0 obj
+(List of figures)
+endobj
+1049 0 obj
+<< /S /GoTo /D (chapter*.60) >>
+endobj
+1051 0 obj
+(Bibliography)
+endobj
+1052 0 obj
+<< /S /GoTo /D [1053 0 R  /Fit ] >>
+endobj
+1056 0 obj <<
+/Length 73        
+/Filter /FlateDecode
+>>
+stream
+xÚ3PHW0Ppç2€Ò†@Ò@DêZêYZ)$çrrê˜Cä€lC0"	×Ð÷Ì5TpÉç
+B4Óa4 0Þ€
+endstream
+endobj
+1053 0 obj <<
+/Type /Page
+/Contents 1056 0 R
+/Resources 1055 0 R
+/MediaBox [0 0 595.276 841.89]
+/Parent 1059 0 R
+>> endobj
+1054 0 obj <<
+/Type /XObject
+/Subtype /Form
+/FormType 1
+/PTEX.FileName (../figs/cover.pdf)
+/PTEX.PageNumber 1
+/PTEX.InfoDict 1060 0 R
+/BBox [0 0 595 841]
+/Resources <<
+/ProcSet [ /PDF /Text ]
+/Font << /F2 1061 0 R>>
+/ExtGState <<
+>>>>
+/Length 1062 0 R
+>>
+stream
+q
+Q q
+Q q
+1.000 1.000 1.000 rg
+  27.06 803.62 m
+  568.22 803.62 l
+  568.22 38.27 l
+  27.06 38.27 l
+  27.06 803.62 l
+h f
+Q q
+0.839 0.961 0.961 rg
+  40.04 763.02 m
+  38.82 764.37 l
+  37.76 765.82 l
+  36.86 767.34 l
+  36.13 768.94 l
+  35.56 770.58 l
+  35.15 772.26 l
+  34.91 773.98 l
+  34.82 775.70 l
+  34.91 777.42 l
+  35.15 779.13 l
+  35.56 780.82 l
+  36.13 782.46 l
+  36.86 784.05 l
+  37.76 785.58 l
+  38.82 787.03 l
+  40.04 788.38 l
+  41.40 789.61 l
+  42.85 790.67 l
+  44.37 791.56 l
+  45.96 792.30 l
+  47.61 792.87 l
+  49.29 793.28 l
+  51.00 793.52 l
+  52.73 793.60 l
+  54.45 793.52 l
+  56.16 793.28 l
+  57.84 792.87 l
+  59.49 792.30 l
+  61.08 791.56 l
+  62.61 790.67 l
+  64.06 789.61 l
+  65.41 788.38 l
+  66.63 787.03 l
+  67.69 785.58 l
+  68.59 784.05 l
+  69.32 782.46 l
+  69.89 780.82 l
+  70.30 779.13 l
+  70.55 777.42 l
+  70.63 775.70 l
+  70.55 773.98 l
+  70.30 772.26 l
+  69.89 770.58 l
+  69.32 768.94 l
+  68.59 767.34 l
+  67.69 765.82 l
+  66.63 764.37 l
+  65.41 763.02 l
+  64.06 761.79 l
+  62.61 760.73 l
+  61.08 759.84 l
+  59.49 759.10 l
+  57.84 758.53 l
+  56.16 758.12 l
+  54.45 757.88 l
+  52.73 757.80 l
+  51.00 757.88 l
+  49.29 758.12 l
+  47.61 758.53 l
+  45.96 759.10 l
+  44.37 759.84 l
+  42.85 760.73 l
+  41.40 761.79 l
+  40.04 763.02 l
+  40.04 763.02 l
+h f
+Q q
+0.631 0.914 0.984 rg
+  69.62 773.25 m
+  69.56 771.86 l
+  69.36 770.48 l
+  69.03 769.12 l
+  68.57 767.79 l
+  67.98 766.51 l
+  67.25 765.28 l
+  66.40 764.11 l
+  65.41 763.02 l
+  64.32 762.03 l
+  63.15 761.17 l
+  61.92 760.45 l
+  60.63 759.86 l
+  59.30 759.40 l
+  57.95 759.07 l
+  56.57 758.87 l
+  55.17 758.80 l
+  53.78 758.87 l
+  52.40 759.07 l
+  51.04 759.40 l
+  49.72 759.86 l
+  48.43 760.45 l
+  47.20 761.17 l
+  46.03 762.03 l
+  44.94 763.02 l
+  43.95 764.11 l
+  43.10 765.28 l
+  42.37 766.51 l
+  41.78 767.79 l
+  41.32 769.12 l
+  40.99 770.48 l
+  40.79 771.86 l
+  40.73 773.25 l
+  40.79 774.64 l
+  40.99 776.02 l
+  41.32 777.38 l
+  41.78 778.71 l
+  42.37 779.99 l
+  43.10 781.23 l
+  43.95 782.39 l
+  44.94 783.49 l
+  46.03 784.47 l
+  47.20 785.33 l
+  48.43 786.05 l
+  49.72 786.65 l
+  51.04 787.11 l
+  52.40 787.44 l
+  53.78 787.63 l
+  55.17 787.70 l
+  56.57 787.63 l
+  57.95 787.44 l
+  59.30 787.11 l
+  60.63 786.65 l
+  61.92 786.05 l
+  63.15 785.33 l
+  64.32 784.47 l
+  65.41 783.49 l
+  66.40 782.39 l
+  67.25 781.23 l
+  67.98 779.99 l
+  68.57 778.71 l
+  69.03 777.38 l
+  69.36 776.02 l
+  69.56 774.64 l
+  69.62 773.25 l
+  69.62 773.25 l
+h f
+Q q
+0.345 0.776 0.988 rg
+  68.61 770.80 m
+  68.41 768.70 l
+  67.81 766.65 l
+  66.81 764.74 l
+  65.41 763.02 l
+  63.69 761.61 l
+  61.77 760.61 l
+  59.73 760.01 l
+  57.62 759.81 l
+  55.51 760.01 l
+  53.47 760.61 l
+  51.55 761.61 l
+  49.83 763.02 l
+  48.43 764.74 l
+  47.43 766.65 l
+  46.83 768.70 l
+  46.63 770.80 l
+  46.83 772.91 l
+  47.43 774.96 l
+  48.43 776.87 l
+  49.83 778.59 l
+  51.55 779.99 l
+  53.47 781.00 l
+  55.51 781.60 l
+  57.62 781.80 l
+  59.73 781.60 l
+  61.77 781.00 l
+  63.69 779.99 l
+  65.41 778.59 l
+  66.81 776.87 l
+  67.81 774.96 l
+  68.41 772.91 l
+  68.61 770.80 l
+  68.61 770.80 l
+h f
+Q q
+0.180 0.541 1.000 rg
+  54.73 763.02 m
+  53.77 764.20 l
+  53.08 765.51 l
+  52.67 766.91 l
+  52.53 768.36 l
+  52.67 769.80 l
+  53.08 771.20 l
+  53.77 772.52 l
+  54.73 773.70 l
+  55.91 774.66 l
+  57.22 775.35 l
+  58.62 775.76 l
+  60.07 775.89 l
+  61.52 775.76 l
+  62.92 775.35 l
+  64.23 774.66 l
+  65.41 773.70 l
+  66.37 772.52 l
+  67.06 771.20 l
+  67.47 769.80 l
+  67.61 768.36 l
+  67.47 766.91 l
+  67.06 765.51 l
+  66.37 764.20 l
+  65.41 763.02 l
+  64.23 762.05 l
+  62.92 761.37 l
+  61.52 760.96 l
+  60.07 760.82 l
+  58.62 760.96 l
+  57.22 761.37 l
+  55.91 762.05 l
+  54.73 763.02 l
+  54.73 763.02 l
+h f
+Q q
+0.839 0.961 0.961 rg
+  65.37 725.22 m
+  64.02 724.00 l
+  62.57 722.94 l
+  61.05 722.04 l
+  59.45 721.31 l
+  57.81 720.74 l
+  56.13 720.33 l
+  54.41 720.08 l
+  52.69 720.00 l
+  50.97 720.08 l
+  49.26 720.33 l
+  47.57 720.74 l
+  45.93 721.31 l
+  44.34 722.04 l
+  42.81 722.94 l
+  41.36 724.00 l
+  40.01 725.22 l
+  38.78 726.57 l
+  37.72 728.02 l
+  36.83 729.55 l
+  36.09 731.14 l
+  35.52 732.79 l
+  35.12 734.47 l
+  34.87 736.18 l
+  34.79 737.90 l
+  34.87 739.63 l
+  35.12 741.34 l
+  35.52 743.02 l
+  36.09 744.67 l
+  36.83 746.26 l
+  37.72 747.79 l
+  38.78 749.23 l
+  40.01 750.59 l
+  41.36 751.81 l
+  42.81 752.87 l
+  44.34 753.77 l
+  45.93 754.50 l
+  47.57 755.07 l
+  49.26 755.48 l
+  50.97 755.72 l
+  52.69 755.81 l
+  54.41 755.72 l
+  56.13 755.48 l
+  57.81 755.07 l
+  59.45 754.50 l
+  61.05 753.77 l
+  62.57 752.87 l
+  64.02 751.81 l
+  65.37 750.59 l
+  66.60 749.23 l
+  67.66 747.79 l
+  68.56 746.26 l
+  69.29 744.67 l
+  69.86 743.02 l
+  70.27 741.34 l
+  70.51 739.63 l
+  70.59 737.90 l
+  70.51 736.18 l
+  70.27 734.47 l
+  69.86 732.79 l
+  69.29 731.14 l
+  68.56 729.55 l
+  67.66 728.02 l
+  66.60 726.57 l
+  65.37 725.22 l
+  65.37 725.22 l
+h f
+Q q
+0.631 0.914 0.984 rg
+  55.14 754.80 m
+  56.53 754.73 l
+  57.91 754.54 l
+  59.27 754.21 l
+  60.60 753.75 l
+  61.88 753.15 l
+  63.11 752.43 l
+  64.28 751.57 l
+  65.37 750.59 l
+  66.36 749.49 l
+  67.22 748.33 l
+  67.94 747.09 l
+  68.53 745.81 l
+  68.99 744.48 l
+  69.32 743.12 l
+  69.52 741.74 l
+  69.59 740.35 l
+  69.52 738.96 l
+  69.32 737.58 l
+  68.99 736.22 l
+  68.53 734.89 l
+  67.94 733.61 l
+  67.22 732.38 l
+  66.36 731.21 l
+  65.37 730.12 l
+  64.28 729.13 l
+  63.11 728.27 l
+  61.88 727.55 l
+  60.60 726.96 l
+  59.27 726.50 l
+  57.91 726.17 l
+  56.53 725.97 l
+  55.14 725.90 l
+  53.75 725.97 l
+  52.37 726.17 l
+  51.01 726.50 l
+  49.68 726.96 l
+  48.40 727.55 l
+  47.16 728.27 l
+  46.00 729.13 l
+  44.90 730.12 l
+  43.92 731.21 l
+  43.06 732.38 l
+  42.34 733.61 l
+  41.74 734.89 l
+  41.28 736.22 l
+  40.95 737.58 l
+  40.76 738.96 l
+  40.69 740.35 l
+  40.76 741.74 l
+  40.95 743.12 l
+  41.28 744.48 l
+  41.74 745.81 l
+  42.34 747.09 l
+  43.06 748.33 l
+  43.92 749.49 l
+  44.90 750.59 l
+  46.00 751.57 l
+  47.16 752.43 l
+  48.40 753.15 l
+  49.68 753.75 l
+  51.01 754.21 l
+  52.37 754.54 l
+  53.75 754.73 l
+  55.14 754.80 l
+  55.14 754.80 l
+h f
+Q q
+0.345 0.776 0.988 rg
+  57.59 753.79 m
+  59.70 753.59 l
+  61.74 752.99 l
+  63.65 751.99 l
+  65.37 750.59 l
+  66.78 748.87 l
+  67.78 746.95 l
+  68.38 744.91 l
+  68.58 742.80 l
+  68.38 740.69 l
+  67.78 738.65 l
+  66.78 736.73 l
+  65.37 735.01 l
+  63.65 733.61 l
+  61.74 732.61 l
+  59.70 732.01 l
+  57.59 731.81 l
+  55.48 732.01 l
+  53.43 732.61 l
+  51.52 733.61 l
+  49.80 735.01 l
+  48.40 736.73 l
+  47.39 738.65 l
+  46.79 740.69 l
+  46.59 742.80 l
+  46.79 744.91 l
+  47.39 746.95 l
+  48.40 748.87 l
+  49.80 750.59 l
+  51.52 751.99 l
+  53.43 752.99 l
+  55.48 753.59 l
+  57.59 753.79 l
+  57.59 753.79 l
+h f
+Q q
+0.180 0.541 1.000 rg
+  65.37 739.91 m
+  64.19 738.94 l
+  62.88 738.26 l
+  61.48 737.85 l
+  60.03 737.71 l
+  58.59 737.85 l
+  57.19 738.26 l
+  55.87 738.94 l
+  54.69 739.91 l
+  53.73 741.09 l
+  53.05 742.40 l
+  52.63 743.80 l
+  52.50 745.25 l
+  52.63 746.69 l
+  53.05 748.09 l
+  53.73 749.41 l
+  54.69 750.59 l
+  55.87 751.55 l
+  57.19 752.24 l
+  58.59 752.65 l
+  60.03 752.78 l
+  61.48 752.65 l
+  62.88 752.24 l
+  64.19 751.55 l
+  65.37 750.59 l
+  66.34 749.41 l
+  67.02 748.09 l
+  67.44 746.69 l
+  67.57 745.25 l
+  67.44 743.80 l
+  67.02 742.40 l
+  66.34 741.09 l
+  65.37 739.91 l
+  65.37 739.91 l
+h f
+Q q
+0.839 0.961 0.961 rg
+  103.04 750.59 m
+  104.26 749.23 l
+  105.32 747.79 l
+  106.22 746.26 l
+  106.95 744.67 l
+  107.52 743.02 l
+  107.93 741.34 l
+  108.18 739.63 l
+  108.26 737.90 l
+  108.18 736.18 l
+  107.93 734.47 l
+  107.52 732.79 l
+  106.95 731.14 l
+  106.22 729.55 l
+  105.32 728.02 l
+  104.26 726.57 l
+  103.04 725.22 l
+  101.68 724.00 l
+  100.24 722.94 l
+  98.71 722.04 l
+  97.12 721.31 l
+  95.47 720.74 l
+  93.79 720.33 l
+  92.08 720.08 l
+  90.35 720.00 l
+  88.63 720.08 l
+  86.92 720.33 l
+  85.24 720.74 l
+  83.59 721.31 l
+  82.00 722.04 l
+  80.47 722.94 l
+  79.03 724.00 l
+  77.67 725.22 l
+  76.45 726.57 l
+  75.39 728.02 l
+  74.49 729.55 l
+  73.76 731.14 l
+  73.19 732.79 l
+  72.78 734.47 l
+  72.53 736.18 l
+  72.45 737.90 l
+  72.53 739.63 l
+  72.78 741.34 l
+  73.19 743.02 l
+  73.76 744.67 l
+  74.49 746.26 l
+  75.39 747.79 l
+  76.45 749.23 l
+  77.67 750.59 l
+  79.03 751.81 l
+  80.47 752.87 l
+  82.00 753.77 l
+  83.59 754.50 l
+  85.24 755.07 l
+  86.92 755.48 l
+  88.63 755.72 l
+  90.35 755.81 l
[TRUNCATED]

To get the complete diff run:
    svnlook diff /svnroot/seqinr -r 1600


More information about the Seqinr-commits mailing list