[Seqinr-commits] r1597 - pkg/inst/doc/src/tables
noreply at r-forge.r-project.org
noreply at r-forge.r-project.org
Sun Apr 26 10:50:53 CEST 2009
Author: lobry
Date: 2009-04-26 10:50:53 +0200 (Sun, 26 Apr 2009)
New Revision: 1597
Modified:
pkg/inst/doc/src/tables/aacost.tex
pkg/inst/doc/src/tables/dpqrtable.tex
pkg/inst/doc/src/tables/toyaa.tex
pkg/inst/doc/src/tables/toycodon.tex
Log:
update xtable generated tables
Modified: pkg/inst/doc/src/tables/aacost.tex
===================================================================
--- pkg/inst/doc/src/tables/aacost.tex 2009-04-23 19:09:43 UTC (rev 1596)
+++ pkg/inst/doc/src/tables/aacost.tex 2009-04-26 08:50:53 UTC (rev 1597)
@@ -1,31 +1,31 @@
-% latex table generated in R 2.8.0 by xtable 1.5-4 package
-% Sun Oct 26 18:14:47 2008
+% latex table generated in R 2.9.0 by xtable 1.5-5 package
+% Thu Apr 23 11:56:33 2009
\begin{table}[ht]
\begin{center}
\begin{tabular}{rlllrrrl}
\hline
- & aaa & a & prec & p & h & tot & gc \\
+ & aaa & a & prec & p & h & tot & gc \\
\hline
-1 & Ala & A & pyr & 1 & 5 & 12 & h \\
- 2 & Cys & C & 3pg & 7 & 9 & 25 & m \\
- 3 & Asp & D & oaa & 1 & 6 & 13 & m \\
- 4 & Glu & E & akg & 3 & 6 & 15 & m \\
- 5 & Phe & F & 2 pep, eryP & 13 & 19 & 52 & l \\
- 6 & Gly & G & 3pg & 2 & 5 & 12 & h \\
- 7 & His & H & penP & 20 & 9 & 38 & m \\
- 8 & Ile & I & pyr, oaa & 4 & 14 & 32 & l \\
- 9 & Lys & K & oaa, pyr & 4 & 13 & 30 & l \\
- 10 & Leu & L & 2 pyr, acCoA & 3 & 12 & 27 & l \\
- 11 & Met & M & oaa, Cys, -pyr & 10 & 12 & 34 & m \\
- 12 & Asn & N & oaa & 3 & 6 & 15 & l \\
- 13 & Pro & P & akg & 4 & 8 & 20 & h \\
- 14 & Gln & Q & akg & 4 & 6 & 16 & m \\
- 15 & Arg & R & akg & 11 & 8 & 27 & h \\
- 16 & Ser & S & 3pg & 2 & 5 & 12 & m \\
- 17 & Thr & T & oaa & 3 & 8 & 19 & m \\
- 18 & Val & V & 2 pyr & 2 & 11 & 23 & m \\
- 19 & Trp & W & 2 pep, eryP, PRPP, -pyr & 28 & 23 & 74 & m \\
- 20 & Tyr & Y & eryP, 2 pep & 13 & 18 & 50 & l \\
+1 & Ala & A & pyr & 1 & 5 & 12 & h \\
+ 2 & Cys & C & 3pg & 7 & 9 & 25 & m \\
+ 3 & Asp & D & oaa & 1 & 6 & 13 & m \\
+ 4 & Glu & E & akg & 3 & 6 & 15 & m \\
+ 5 & Phe & F & 2 pep, eryP & 13 & 19 & 52 & l \\
+ 6 & Gly & G & 3pg & 2 & 5 & 12 & h \\
+ 7 & His & H & penP & 20 & 9 & 38 & m \\
+ 8 & Ile & I & pyr, oaa & 4 & 14 & 32 & l \\
+ 9 & Lys & K & oaa, pyr & 4 & 13 & 30 & l \\
+ 10 & Leu & L & 2 pyr, acCoA & 3 & 12 & 27 & l \\
+ 11 & Met & M & oaa, Cys, -pyr & 10 & 12 & 34 & m \\
+ 12 & Asn & N & oaa & 3 & 6 & 15 & l \\
+ 13 & Pro & P & akg & 4 & 8 & 20 & h \\
+ 14 & Gln & Q & akg & 4 & 6 & 16 & m \\
+ 15 & Arg & R & akg & 11 & 8 & 27 & h \\
+ 16 & Ser & S & 3pg & 2 & 5 & 12 & m \\
+ 17 & Thr & T & oaa & 3 & 8 & 19 & m \\
+ 18 & Val & V & 2 pyr & 2 & 11 & 23 & m \\
+ 19 & Trp & W & 2 pep, eryP, PRPP, -pyr & 28 & 23 & 74 & m \\
+ 20 & Tyr & Y & eryP, 2 pep & 13 & 18 & 50 & l \\
\hline
\end{tabular}
\caption{Aerobic cost of amino-acids in \textit{Escherichia coli} and G+C classes to be loaded with \texttt{data(aacost).}}
Modified: pkg/inst/doc/src/tables/dpqrtable.tex
===================================================================
--- pkg/inst/doc/src/tables/dpqrtable.tex 2009-04-23 19:09:43 UTC (rev 1596)
+++ pkg/inst/doc/src/tables/dpqrtable.tex 2009-04-26 08:50:53 UTC (rev 1597)
@@ -1,30 +1,30 @@
-% latex table generated in R 2.8.0 by xtable 1.5-4 package
-% Sun Oct 26 18:14:16 2008
+% latex table generated in R 2.9.0 by xtable 1.5-5 package
+% Thu Apr 23 11:56:03 2009
\begin{table}[ht]
\begin{center}
\begin{tabular}{rllll}
\hline
- & d & p & q & r \\
+ & d & p & q & r \\
\hline
-beta & dbeta & pbeta & qbeta & rbeta \\
- binom & dbinom & pbinom & qbinom & rbinom \\
- cauchy & dcauchy & pcauchy & qcauchy & rcauchy \\
- chisq & dchisq & pchisq & qchisq & rchisq \\
- exp & dexp & pexp & qexp & rexp \\
- f & df & pf & qf & rf \\
- gamma & dgamma & pgamma & qgamma & rgamma \\
- geom & dgeom & pgeom & qgeom & rgeom \\
- hyper & dhyper & phyper & qhyper & rhyper \\
- lnorm & dlnorm & plnorm & qlnorm & rlnorm \\
- logis & dlogis & plogis & qlogis & rlogis \\
- nbinom & dnbinom & pnbinom & qnbinom & rnbinom \\
- norm & dnorm & pnorm & qnorm & rnorm \\
- pois & dpois & ppois & qpois & rpois \\
- signrank & dsignrank & psignrank & qsignrank & rsignrank \\
- t & dt & pt & qt & rt \\
- unif & dunif & punif & qunif & runif \\
- weibull & dweibull & pweibull & qweibull & rweibull \\
- wilcox & dwilcox & pwilcox & qwilcox & rwilcox \\
+beta & dbeta & pbeta & qbeta & rbeta \\
+ binom & dbinom & pbinom & qbinom & rbinom \\
+ cauchy & dcauchy & pcauchy & qcauchy & rcauchy \\
+ chisq & dchisq & pchisq & qchisq & rchisq \\
+ exp & dexp & pexp & qexp & rexp \\
+ f & df & pf & qf & rf \\
+ gamma & dgamma & pgamma & qgamma & rgamma \\
+ geom & dgeom & pgeom & qgeom & rgeom \\
+ hyper & dhyper & phyper & qhyper & rhyper \\
+ lnorm & dlnorm & plnorm & qlnorm & rlnorm \\
+ logis & dlogis & plogis & qlogis & rlogis \\
+ nbinom & dnbinom & pnbinom & qnbinom & rnbinom \\
+ norm & dnorm & pnorm & qnorm & rnorm \\
+ pois & dpois & ppois & qpois & rpois \\
+ signrank & dsignrank & psignrank & qsignrank & rsignrank \\
+ t & dt & pt & qt & rt \\
+ unif & dunif & punif & qunif & runif \\
+ weibull & dweibull & pweibull & qweibull & rweibull \\
+ wilcox & dwilcox & pwilcox & qwilcox & rwilcox \\
\hline
\end{tabular}
\caption{Density, distribution function, quantile function and random generation for the predefined distributions under R}
Modified: pkg/inst/doc/src/tables/toyaa.tex
===================================================================
--- pkg/inst/doc/src/tables/toyaa.tex 2009-04-23 19:09:43 UTC (rev 1596)
+++ pkg/inst/doc/src/tables/toyaa.tex 2009-04-26 08:50:53 UTC (rev 1597)
@@ -1,17 +1,17 @@
-% latex table generated in R 2.8.0 by xtable 1.5-4 package
-% Mon Nov 3 18:31:27 2008
+% latex table generated in R 2.9.0 by xtable 1.5-5 package
+% Thu Apr 23 11:56:02 2009
\begin{table}[ht]
\begin{center}
\begin{tabular}{rrrr}
\hline
- & Ala & Val & Cys \\
+ & Ala & Val & Cys \\
\hline
-1 & 130 & 70 & 0 \\
- 2 & 60 & 40 & 0 \\
- 3 & 60 & 35 & 5 \\
+1 & 130 & 70 & 0 \\
+ 2 & 60 & 40 & 0 \\
+ 3 & 60 & 35 & 5 \\
\hline
\end{tabular}
-\caption{Data to be loaded with \texttt{data(toyaa).}}
+\caption{A very simple example of amino-acid counts in three proteins to be loaded with \texttt{data(toyaa).}}
\label{toyaa}
\end{center}
\end{table}
Modified: pkg/inst/doc/src/tables/toycodon.tex
===================================================================
--- pkg/inst/doc/src/tables/toycodon.tex 2009-04-23 19:09:43 UTC (rev 1596)
+++ pkg/inst/doc/src/tables/toycodon.tex 2009-04-26 08:50:53 UTC (rev 1597)
@@ -1,14 +1,14 @@
-% latex table generated in R 2.8.0 by xtable 1.5-4 package
-% Sun Oct 26 18:14:17 2008
+% latex table generated in R 2.9.0 by xtable 1.5-5 package
+% Thu Apr 23 11:56:04 2009
\begin{table}[ht]
\begin{center}
\begin{tabular}{rrrrrrrrrrr}
\hline
- & gca & gcc & gcg & gct & gta & gtc & gtg & gtt & tgt & tgc \\
+ & gca & gcc & gcg & gct & gta & gtc & gtg & gtt & tgt & tgc \\
\hline
-1 & 33 & 32 & 32 & 33 & 18 & 17 & 17 & 18 & 0 & 0 \\
- 2 & 13 & 17 & 17 & 13 & 8 & 12 & 12 & 8 & 0 & 0 \\
- 3 & 16 & 14 & 14 & 16 & 8 & 9 & 10 & 8 & 3 & 2 \\
+1 & 33 & 32 & 32 & 33 & 18 & 17 & 17 & 18 & 0 & 0 \\
+ 2 & 13 & 17 & 17 & 13 & 8 & 12 & 12 & 8 & 0 & 0 \\
+ 3 & 16 & 14 & 14 & 16 & 8 & 9 & 10 & 8 & 3 & 2 \\
\hline
\end{tabular}
\caption{A very simple example of codon counts in three coding sequences to be loaded with \texttt{data(toycodon).}}
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