[Seqinr-commits] r1580 - pkg/inst/doc/src/mainmatter

[noreply at r-forge.r-project.org]

Author: lobry
Date: 2009-04-23 11:27:39 +0200 (Thu, 23 Apr 2009)
New Revision: 1580

Modified:
   pkg/inst/doc/src/mainmatter/getseqflat.tex
Log:
R 2.9.0 compilation

Modified: pkg/inst/doc/src/mainmatter/getseqflat.tex
===================================================================
--- pkg/inst/doc/src/mainmatter/getseqflat.tex	2009-04-23 08:58:39 UTC (rev 1579)
+++ pkg/inst/doc/src/mainmatter/getseqflat.tex	2009-04-23 09:27:39 UTC (rev 1580)
@@ -5,7 +5,7 @@
 
 \author{Charif, D. \and Lobry, J.R.}
 
-\usepackage{/Library/Frameworks/R.framework/Resources/share/texmf/Sweave}
+\usepackage{Sweave}
 \begin{document}
 %
 % To change the R input/output style:
@@ -67,7 +67,7 @@
      pattern = ".fasta")
 \end{Sinput}
 \begin{Soutput}
- [1] "ATH1_pep_cm_20040228.fasta" "Anouk.fasta"               
+ [1] "Anouk.fasta"                "ATH1_pep_cm_20040228.fasta"
  [3] "bb.fasta"                   "bordetella.fasta"          
  [5] "ct.fasta"                   "ecolicgpe5.fasta"          
  [7] "gopher.fasta"               "humanMito.fasta"           
@@ -479,7 +479,7 @@
 \end{Sinput}
 \begin{Soutput}
    user  system elapsed 
-  5.781   0.134   6.407 
+  5.778   0.132   6.218 
 \end{Soutput}
 \end{Schunk}
 
@@ -500,7 +500,7 @@
 \end{Sinput}
 \begin{Soutput}
    user  system elapsed 
-  0.329   0.009   0.341 
+  0.331   0.010   0.345 
 \end{Soutput}
 \end{Schunk}
 
@@ -513,7 +513,7 @@
  object.size(ath)/2^20
 \end{Sinput}
 \begin{Soutput}
-[1] 14.65537
+14.6553726196289 bytes
 \end{Soutput}
 \begin{Sinput}
  file.info(athfile)$size/2^20
@@ -1498,27 +1498,31 @@
 
 \section*{Session Informations}
 
+\begin{scriptsize}
+
 This part was compiled under the following \Rlogo{}~environment:
 
 \begin{itemize}
-  \item R version 2.8.0 (2008-10-20), \verb|i386-apple-darwin8.8.2|
+  \item R version 2.9.0 (2009-04-17), \verb|i386-apple-darwin8.11.1|
   \item Locale: \verb|fr_FR.UTF-8/fr_FR.UTF-8/fr_FR.UTF-8/C/C/C|
-  \item Base packages: base, datasets, grDevices, graphics, methods,
-    stats, utils
-  \item Other packages: MASS~7.2-44, ade4~1.4-9, ape~2.2-2,
-    nlme~3.1-89, quadprog~1.4-11, seqinr~2.0-0, tseries~0.10-16,
-    xtable~1.5-4, zoo~1.5-4
-  \item Loaded via a namespace (and not attached): grid~2.8.0,
-    lattice~0.17-15, tools~2.8.0
+  \item Base packages: base, datasets, graphics, grDevices, grid,
+    methods, stats, utils
+  \item Other packages: ade4~1.4-11, ape~2.3, grImport~0.4-3,
+    MASS~7.2-46, quadprog~1.4-11, seqinr~2.0-3, tseries~0.10-18,
+    XML~2.3-0, xtable~1.5-5, zoo~1.5-5
+  \item Loaded via a namespace (and not attached): gee~4.13-13,
+    lattice~0.17-22, nlme~3.1-90, tools~2.9.0
 \end{itemize}
 There were two compilation steps:
 
 \begin{itemize}
-  \item \Rlogo{} compilation time was: Sun Oct 26 17:53:17 2008
+  \item \Rlogo{} compilation time was: Thu Apr 23 11:20:25 2009
   \item \LaTeX{} compilation time was: \today
 \end{itemize}
 
+\end{scriptsize}
 
+
 % END - DO NOT REMOVE THIS LINE
 
 %%%%%%%%%%%%  BIBLIOGRAPHY %%%%%%%%%%%%%%%%%