Sat Mar 31 13:01:34 CEST 2012

Author: phgrosjean
Date: 2012-03-31 13:01:33 +0200 (Sat, 31 Mar 2012)
New Revision: 460

Added:
   pkg/SciViews/inst/LICENSE
   pkg/SciViews/inst/doc/correlation.pdf
   pkg/SciViews/inst/doc/introduction.pdf
   pkg/SciViews/inst/doc/pca.pdf
   pkg/svDialogs/inst/LICENSE
   pkg/svDialogs/inst/NEWS.Rd
   pkg/svDialogstcltk/inst/LICENSE
   pkg/svDialogstcltk/inst/NEWS.Rd
   pkg/svGUI/inst/LICENSE
   pkg/svHttp/inst/LICENSE
   pkg/svIDE/inst/LICENSE
   pkg/svKomodo/inst/LICENSE
   pkg/svMisc/inst/LICENSE
   pkg/svSocket/inst/LICENSE
   pkg/svSweave/inst/LICENSE
   pkg/svTools/inst/LICENSE
   pkg/svUnit/inst/LICENSE
   pkg/svUnit/vignettes/
   pkg/svUnit/vignettes/svUnit.Rnw
   pkg/svUnit/vignettes/svUnit.lyx
   pkg/svUnit/vignettes/svUnit_KomodoRUnit.png
   pkg/svUnit/vignettes/svUnit_wikiReport.png
   pkg/svWidgets/inst/LICENSE
   pkg/tcltk2/inst/tklibs/ttktheme_aquablue/
   pkg/tcltk2/inst/tklibs/ttktheme_aquablue/.DS_Store
   pkg/tcltk2/inst/tklibs/ttktheme_aquablue/aquaTheme.tcl
Removed:
   pkg/SciViews/LICENSE
   pkg/SciViews/vignettes/correlation.pdf
   pkg/SciViews/vignettes/introduction.pdf
   pkg/SciViews/vignettes/pca.pdf
   pkg/svDialogs/LICENSE
   pkg/svDialogstcltk/LICENSE
   pkg/svGUI/LICENSE
   pkg/svHttp/LICENSE
   pkg/svIDE/LICENSE
   pkg/svKomodo/LICENSE
   pkg/svMisc/LICENSE
   pkg/svSocket/LICENSE
   pkg/svSweave/LICENSE
   pkg/svTools/LICENSE
   pkg/svUnit/LICENSE
   pkg/svUnit/inst/doc/svUnit.Rnw
   pkg/svUnit/inst/doc/svUnit.lyx
   pkg/svUnit/inst/doc/svUnit_KomodoRUnit.png
   pkg/svUnit/inst/doc/svUnit_wikiReport.png
   pkg/svWidgets/LICENSE
Modified:
   pkg/SciViews/DESCRIPTION
   pkg/SciViews/NEWS
   pkg/SciViews/R/character.R
   pkg/SciViews/R/file.R
   pkg/SciViews/R/misc.R
   pkg/SciViews/inst/CITATION
   pkg/SciViews/man/SciViews-package.Rd
   pkg/SciViews/man/ln.Rd
   pkg/svDialogs/DESCRIPTION
   pkg/svDialogs/NEWS
   pkg/svDialogs/R/flexibleDlg.R
   pkg/svDialogs/inst/CITATION
   pkg/svDialogs/man/svDialogs-package.Rd
   pkg/svDialogstcltk/DESCRIPTION
   pkg/svDialogstcltk/NAMESPACE
   pkg/svDialogstcltk/NEWS
   pkg/svDialogstcltk/inst/CITATION
   pkg/svDialogstcltk/man/svDialogstcltk-package.Rd
   pkg/svGUI/DESCRIPTION
   pkg/svGUI/NEWS
   pkg/svGUI/R/gui.R
   pkg/svGUI/inst/CITATION
   pkg/svGUI/man/svGUI-package.Rd
   pkg/svHttp/DESCRIPTION
   pkg/svHttp/NEWS
   pkg/svHttp/R/httpServer.R
   pkg/svHttp/inst/CITATION
   pkg/svHttp/man/svHttp-package.Rd
   pkg/svIDE/DESCRIPTION
   pkg/svIDE/inst/CITATION
   pkg/svKomodo/DESCRIPTION
   pkg/svKomodo/NEWS
   pkg/svKomodo/R/svKomodo-internal.R
   pkg/svKomodo/inst/CITATION
   pkg/svKomodo/man/svKomodo-package.Rd
   pkg/svMisc/DESCRIPTION
   pkg/svMisc/NEWS
   pkg/svMisc/R/captureAll.R
   pkg/svMisc/R/completion.R
   pkg/svMisc/R/progress.R
   pkg/svMisc/R/rjson.R
   pkg/svMisc/R/rmTemp.R
   pkg/svMisc/inst/CITATION
   pkg/svMisc/man/svMisc-package.Rd
   pkg/svSocket/DESCRIPTION
   pkg/svSocket/inst/CITATION
   pkg/svSocket/man/svSocket-package.Rd
   pkg/svSweave/DESCRIPTION
   pkg/svSweave/inst/CITATION
   pkg/svTools/DESCRIPTION
   pkg/svTools/NEWS
   pkg/svTools/R/completeDescription.R
   pkg/svTools/R/completion.R
   pkg/svTools/R/lintDescription.R
   pkg/svTools/R/searchEngines.R
   pkg/svTools/R/svTools-internal.R
   pkg/svTools/inst/CITATION
   pkg/svTools/man/svTools-package.Rd
   pkg/svUnit/DESCRIPTION
   pkg/svUnit/NEWS
   pkg/svUnit/R/svSuite.R
   pkg/svUnit/inst/CITATION
   pkg/svUnit/man/svUnit-package.Rd
   pkg/svWidgets/DESCRIPTION
   pkg/svWidgets/NEWS
   pkg/svWidgets/R/Tool.R
   pkg/svWidgets/R/tkMenu.R
   pkg/svWidgets/R/tkTool.R
   pkg/svWidgets/inst/CITATION
   pkg/svWidgets/man/svWidgets-package.Rd
   pkg/tcltk2/DESCRIPTION
   pkg/tcltk2/NEWS
   pkg/tcltk2/R/tclTask.R
   pkg/tcltk2/inst/CITATION
   pkg/tcltk2/man/tcltk2-package.Rd
Log:
Various change in R packages, following notes in R 2.15.0 CMD check

Modified: pkg/SciViews/DESCRIPTION
===================================================================

--- pkg/SciViews/DESCRIPTION	2012-03-29 19:49:13 UTC (rev 459)
+++ pkg/SciViews/DESCRIPTION	2012-03-31 11:01:33 UTC (rev 460)
@@ -1,15 +1,17 @@
 Package: SciViews
 Type: Package
+Version: 0.9-7
+Date: 2012-03-31
 Title: SciViews GUI API - Main package
+Authors at R: c(person("Philippe", "Grosjean", role = c("aut", "cre"),
+  email = "phgrosjean at sciviews.org"))
+Author: Philippe Grosjean
+Maintainer: Philippe Grosjean <phgrosjean at sciviews.org>
+Depends: R (>= 2.6.0), methods, grDevices, graphics, stats, MASS
 Imports: ellipse, data.table
-Depends: R (>= 2.6.0), methods, grDevices, graphics, stats, MASS
 Enhances: base, stats
 Description: Functions to install SciViews additions to R, and more (various) tools
-Version: 0.9-6
-Date: 2012-03-21
-Author: Philippe Grosjean
-Maintainer: Philippe Grosjean <phgrosjean at sciviews.org>
 License: GPL-2
-LazyLoad: yes
+ByteCompile: yes
 URL: http://www.sciviews.org/SciViews-R
 BugReports: https://r-forge.r-project.org/tracker/?group_id=194

Deleted: pkg/SciViews/LICENSE
===================================================================
--- pkg/SciViews/LICENSE	2012-03-29 19:49:13 UTC (rev 459)
+++ pkg/SciViews/LICENSE	2012-03-31 11:01:33 UTC (rev 460)
@@ -1,340 +0,0 @@
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Modified: pkg/SciViews/NEWS
===================================================================
--- pkg/SciViews/NEWS	2012-03-29 19:49:13 UTC (rev 459)
+++ pkg/SciViews/NEWS	2012-03-31 11:01:33 UTC (rev 460)
@@ -1,5 +1,12 @@
 = SciViews News
 
+== SciViews version 0.9-7
+
+* Small corrections in man pages.
+
+* Partial argument matching for all(.names) in names(). Fixed.
+
+
 == SciViews version 0.9-6
 
 * Added further (misc) functions.

Modified: pkg/SciViews/R/character.R
===================================================================
--- pkg/SciViews/R/character.R	2012-03-29 19:49:13 UTC (rev 459)
+++ pkg/SciViews/R/character.R	2012-03-31 11:01:33 UTC (rev 460)
@@ -112,7 +112,7 @@
 ## with stop() or warning() for instance, that use sep = "".
 ## Thus, we define:
 p <- function (..., sep = "", collapse = NULL) 
-	.Internal(paste(list(...), sep, collapse))
+	paste(..., sep = sel, collapse = collapse)
 	
 p_ <- paste
 

Modified: pkg/SciViews/R/file.R
===================================================================
--- pkg/SciViews/R/file.R	2012-03-29 19:49:13 UTC (rev 459)
+++ pkg/SciViews/R/file.R	2012-03-31 11:01:33 UTC (rev 460)
@@ -5,7 +5,7 @@
 path <- function (..., fsep = .Platform$file.sep)
 {
 	## Create a path objects inheriting from character
-	return(structure(.Internal(file.path(list(...), fsep)),
+	return(structure(file.path(..., fsep = fsep),
 		class = c("path", "character")))
 }
 
@@ -74,12 +74,12 @@
 	
 ## tempdir
 dirTemp <- function ()
-	return(structure(.Internal(tempdir()), class = c("path", "character")))
+	return(structure(tempdir(), class = c("path", "character")))
 
 ## tempfile
 fileTemp <- function (pattern = "file", tmpdir = tempdir(), fileext = "")
-	return(structure(.Internal(tempfile(pattern, tmpdir, fileext)),
-		class = c("path", "character")))
+	return(structure(tempfile(pattern = pattern, tmpdir = tmpdir,
+		fileext = fileext), class = c("path", "character")))
 
 ## Sys.which, TODO: keep names and display them in print.path objects!
 fileFind <- function (names)

Modified: pkg/SciViews/R/misc.R
===================================================================
--- pkg/SciViews/R/misc.R	2012-03-29 19:49:13 UTC (rev 459)
+++ pkg/SciViews/R/misc.R	2012-03-31 11:01:33 UTC (rev 460)
@@ -64,7 +64,7 @@
 ## Note that for environments, we got items by alphabetic order
 ## => not exactly the same as for vector, list, or so!
 names <- function (x)
-	if (inherits(x, "environment")) ls(x, all = TRUE) else base::names(x)
+	if (inherits(x, "environment")) ls(x, all.names = TRUE) else base::names(x)
 ## Do we implement `names<-` for environments???
 
 ## Simpler names for often used functions

Modified: pkg/SciViews/inst/CITATION
===================================================================
--- pkg/SciViews/inst/CITATION	2012-03-29 19:49:13 UTC (rev 459)
+++ pkg/SciViews/inst/CITATION	2012-03-31 11:01:33 UTC (rev 460)
@@ -2,9 +2,9 @@
 
 citEntry(entry="Manual",
          title = "SciViews-R: A GUI API for R",
-         author = "Philippe Grosjean",
+         author = personList(as.person("Philippe Grosjean")),
          organization = "UMONS",
-         address      = "Mons, Belgium",
+         address      = "MONS, Belgium",
          year         = version$year,
          url          = "http://www.sciviews.org/SciViews-R",
 
@@ -13,10 +13,10 @@
                "SciViews: A GUI API for R. ",
                "UMONS, Mons, Belgium. ",
                "URL http://www.sciviews.org/SciViews-R.",
-               sep="")
+               sep = "")
          )
 
 citFooter("We have invested a lot of time and effort in creating SciViews-R,",
-          "please cite it when using it together with R.",
-	  "See also", sQuote("citation()"),
-	  "for citing R.")
+    "please cite it when using it together with R.",
+	"See also", sQuote("citation()"),
+	"for citing R.")

Added: pkg/SciViews/inst/LICENSE
===================================================================
--- pkg/SciViews/inst/LICENSE	                        (rev 0)
+++ pkg/SciViews/inst/LICENSE	2012-03-31 11:01:33 UTC (rev 460)
@@ -0,0 +1,340 @@
+		    GNU GENERAL PUBLIC LICENSE
+		       Version 2, June 1991
+
+ Copyright (C) 1989, 1991 Free Software Foundation, Inc.
+                       59 Temple Place, Suite 330, Boston, MA  02111-1307  USA
+ Everyone is permitted to copy and distribute verbatim copies
+ of this license document, but changing it is not allowed.
+
+			    Preamble
+
+  The licenses for most software are designed to take away your
+freedom to share and change it.  By contrast, the GNU General Public
+License is intended to guarantee your freedom to share and change free
+software--to make sure the software is free for all its users.  This
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+your programs, too.
+
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+   TERMS AND CONDITIONS FOR COPYING, DISTRIBUTION AND MODIFICATION
+
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[TRUNCATED]

To get the complete diff run:
    svnlook diff /svnroot/sciviews -r 460
