[Rodbcext-commits] r19 - in pkg/geoclimate: R inst

noreply at r-forge.r-project.org noreply at r-forge.r-project.org
Fri Mar 30 11:12:04 CEST 2012


Author: jaunario
Date: 2012-03-30 11:12:03 +0200 (Fri, 30 Mar 2012)
New Revision: 19

Added:
   pkg/geoclimate/inst/gsod_ref.csv
   pkg/geoclimate/inst/gsod_stations.csv
Modified:
   pkg/geoclimate/R/gsod.r
   pkg/geoclimate/R/nasa.r
Log:
TODO in nasa.r, gsod.r
added GSOD.update
added gsod_stations.csv, gsod_ref.csv

Modified: pkg/geoclimate/R/gsod.r
===================================================================
--- pkg/geoclimate/R/gsod.r	2012-03-30 08:12:13 UTC (rev 18)
+++ pkg/geoclimate/R/gsod.r	2012-03-30 09:12:03 UTC (rev 19)
@@ -4,13 +4,31 @@
 # Licence GPL v3
 
 # Current ftp site
+GSOD.ftp <- "ftp://ftp.ncdc.noaa.gov/pub/data/gsod"
+GSOD.varrefs <- read.csv(system.file("gsod_ref.csv", package="geoclimate"), stringsAsFactors=FALSE)
+# TODO proper parse of GSOD.stations
+GSOD.stations <- read.csv(system.file("gsod_stations.csv", package="geoclimate"), stringsAsFactors=FALSE)
 
+
+GSOD.update <- function(){
+	if(!file.copy(system.file("gsod_stations.csv", package="geoclimate"),paste(system.file("gsod_stations.csv", package="geoclimate"),".bck",sep=""),overwrite=TRUE)){
+		show.message("Unable to create station data backup file. GSOD update process aborted.", appendLF=TRUE)
+	} else {
+		show.message("Downloading station info file from GSOD FTP site.", EL=TRUE, appendLF=FALSE)
+		dl.success <- withRetry(download.file("ftp://ftp.ncdc.noaa.gov/pub/data/inventories/ISH-HISTORY.CSV",system.file("gsod_stations.csv", package="geoclimate"),mode="wb"))
+		if (dl.success!=0){
+			show.message("Failed to connect GSOD FTP site.", appendLF=TRUE)
+			file.copy(system.file("gsod_stations.csv.bck", package="geoclimate"),system.file("gsod_stations.csv", package="geoclimate"),overwrite=TRUE)
+		} else {
+			show.message("Reading station info file from GSOD website.", appendLF=TRUE)
+			assign("GSOD.stations", read.csv(system.file("gsod_stations.csv", package="geoclimate"), stringsAsFactors=FALSE),envir=.GlobalEnv)
+		}
+	}		
+}
+
 get.gsod <- function(year, station, savepath=getwd(), rm.existing=FALSE){
 	result <- vector()
 	
-	GSOD.ftp <- "ftp://ftp.ncdc.noaa.gov/pub/data/gsod"
-	GSOD.varrefs <- read.csv(system.file("gsod_ref.csv", package="geoclimate"), stringsAsFactors=FALSE)
-
 	if(!force.directories(savepath, recursive=TRUE)){
 		show.message("Error: Can't create download path.", appendLF=TRUE)
 	} else if(!require(RCurl)){
@@ -44,17 +62,17 @@
 				gsod <- as.data.frame(wdate)
 				
 				# CLEAN UP CLIMATE DATA
-				gsod$tavg  <- round(FtoC(as.numeric(TEMP)),1)*10 # MEAN TEMP
-				gsod$slpressure   <- as.numeric(SLP)*10  # SEA LEVEL PRESSURE
-				gsod$stpressure   <- as.numeric(STP)*10  # STATION PRESSURE
-				gsod$tdew  <- round(FtoC(as.numeric(DEWP)),1)*10  # MEAN DEW POINT
+				gsod$tavg 		<- round(FtoC(as.numeric(TEMP)),1)*10 # MEAN TEMP
+				gsod$slpressure <- as.numeric(SLP)*10  # SEA LEVEL PRESSURE
+				gsod$stpressure <- as.numeric(STP)*10  # STATION PRESSURE
+				gsod$tdew 		<- round(FtoC(as.numeric(DEWP)),1)*10  # MEAN DEW POINT
 				gsod$visibility <- round((as.numeric(VISIB) * 1.609344),1)*10 # VISIBILITY
 				
 				##############################################
 				# WINDSPEED NEEDED IN ORYZA2k
-				gsod$wind  <- round(as.numeric(WDSP) * 0.514444444,1)*10 # WIND SPEED
-				gsod$maxwind <- round(as.numeric(MXSPD) * 0.514444444,1)*10  # MAX SUSTAINED SPEED
-				gsod$gust  <- round(as.numeric(GUST) * 0.514444444,1)*10  # MAX GUST
+				gsod$wind  		<- round(as.numeric(WDSP) * 0.514444444,1)*10 # WIND SPEED
+				gsod$maxwind 	<- round(as.numeric(MXSPD) * 0.514444444,1)*10  # MAX SUSTAINED SPEED
+				gsod$gust  		<- round(as.numeric(GUST) * 0.514444444,1)*10  # MAX GUST
 			  
 				##############################################
 				# MAX T NEEDED IN ORYZA2k
@@ -77,9 +95,10 @@
 				gsod <- cbind(gsod, indicators, stringsAsFactors=FALSE)
 				result <- new('weather')
 				result at stn <- station
-				result at lon <- x
-				result at lat <- y
-				result at alt <- alt
+				# TODO: get from database?
+				#result at lon <- x
+				#result at lat <- y
+				#result at alt <- alt
 				result at w <- gsod
 			}
 		}

Modified: pkg/geoclimate/R/nasa.r
===================================================================
--- pkg/geoclimate/R/nasa.r	2012-03-30 08:12:13 UTC (rev 18)
+++ pkg/geoclimate/R/nasa.r	2012-03-30 09:12:03 UTC (rev 19)
@@ -3,6 +3,7 @@
 # Version 0.0.1
 # Licence GPL v3
 
+#TODO option savefile or not
 get.nasa <- function(x, y, stdate="1983-1-1", endate=Sys.Date(), savepath=getwd(), rm.existing=FALSE){
 	result <- vector()
 	if(length(x)!=1|length(y)!=1){

Added: pkg/geoclimate/inst/gsod_ref.csv
===================================================================
--- pkg/geoclimate/inst/gsod_ref.csv	                        (rev 0)
+++ pkg/geoclimate/inst/gsod_ref.csv	2012-03-30 09:12:03 UTC (rev 19)
@@ -0,0 +1,15 @@
+procseq,variable,dbase,stpos,enpos,missing,datatype
+1,YEARMODA,wdate,15,22,,Int
+2,TEMP,tavg,25,30,9999.9,Real
+3,SLP,slpressure,47,52,9999.9,Real
+4,STP,stpressure,58,63,9999.9,Real
+5,DEWP,tdew,36,41,9999.9,Real
+6,VISIB,visibility,69,73,999.9,Real
+7,WDSP,wind,79,83,999.9,Real
+8,MXSPD,maxwind,89,93,999.9,Real
+9,GUST,gust,96,100,999.9,Real
+10,MAX,tmax,103,108,9999.9,Real
+11,MIN,tmin,111,116,9999.9,Real
+12,PRCP,prec,119,123,99.99,Real
+13,SNDP,snowdepth,126,130,999.9,Real
+14,FRSHTT,,133,138,,Int

Added: pkg/geoclimate/inst/gsod_stations.csv
===================================================================
--- pkg/geoclimate/inst/gsod_stations.csv	                        (rev 0)
+++ pkg/geoclimate/inst/gsod_stations.csv	2012-03-30 09:12:03 UTC (rev 19)
@@ -0,0 +1,31468 @@
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[TRUNCATED]

To get the complete diff run:
    svnlook diff /svnroot/rodbcext -r 19


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