[Rodbcext-commits] r19 - in pkg/geoclimate: R inst
noreply at r-forge.r-project.org
noreply at r-forge.r-project.org
Fri Mar 30 11:12:04 CEST 2012
Author: jaunario
Date: 2012-03-30 11:12:03 +0200 (Fri, 30 Mar 2012)
New Revision: 19
Added:
pkg/geoclimate/inst/gsod_ref.csv
pkg/geoclimate/inst/gsod_stations.csv
Modified:
pkg/geoclimate/R/gsod.r
pkg/geoclimate/R/nasa.r
Log:
TODO in nasa.r, gsod.r
added GSOD.update
added gsod_stations.csv, gsod_ref.csv
Modified: pkg/geoclimate/R/gsod.r
===================================================================
--- pkg/geoclimate/R/gsod.r 2012-03-30 08:12:13 UTC (rev 18)
+++ pkg/geoclimate/R/gsod.r 2012-03-30 09:12:03 UTC (rev 19)
@@ -4,13 +4,31 @@
# Licence GPL v3
# Current ftp site
+GSOD.ftp <- "ftp://ftp.ncdc.noaa.gov/pub/data/gsod"
+GSOD.varrefs <- read.csv(system.file("gsod_ref.csv", package="geoclimate"), stringsAsFactors=FALSE)
+# TODO proper parse of GSOD.stations
+GSOD.stations <- read.csv(system.file("gsod_stations.csv", package="geoclimate"), stringsAsFactors=FALSE)
+
+GSOD.update <- function(){
+ if(!file.copy(system.file("gsod_stations.csv", package="geoclimate"),paste(system.file("gsod_stations.csv", package="geoclimate"),".bck",sep=""),overwrite=TRUE)){
+ show.message("Unable to create station data backup file. GSOD update process aborted.", appendLF=TRUE)
+ } else {
+ show.message("Downloading station info file from GSOD FTP site.", EL=TRUE, appendLF=FALSE)
+ dl.success <- withRetry(download.file("ftp://ftp.ncdc.noaa.gov/pub/data/inventories/ISH-HISTORY.CSV",system.file("gsod_stations.csv", package="geoclimate"),mode="wb"))
+ if (dl.success!=0){
+ show.message("Failed to connect GSOD FTP site.", appendLF=TRUE)
+ file.copy(system.file("gsod_stations.csv.bck", package="geoclimate"),system.file("gsod_stations.csv", package="geoclimate"),overwrite=TRUE)
+ } else {
+ show.message("Reading station info file from GSOD website.", appendLF=TRUE)
+ assign("GSOD.stations", read.csv(system.file("gsod_stations.csv", package="geoclimate"), stringsAsFactors=FALSE),envir=.GlobalEnv)
+ }
+ }
+}
+
get.gsod <- function(year, station, savepath=getwd(), rm.existing=FALSE){
result <- vector()
- GSOD.ftp <- "ftp://ftp.ncdc.noaa.gov/pub/data/gsod"
- GSOD.varrefs <- read.csv(system.file("gsod_ref.csv", package="geoclimate"), stringsAsFactors=FALSE)
-
if(!force.directories(savepath, recursive=TRUE)){
show.message("Error: Can't create download path.", appendLF=TRUE)
} else if(!require(RCurl)){
@@ -44,17 +62,17 @@
gsod <- as.data.frame(wdate)
# CLEAN UP CLIMATE DATA
- gsod$tavg <- round(FtoC(as.numeric(TEMP)),1)*10 # MEAN TEMP
- gsod$slpressure <- as.numeric(SLP)*10 # SEA LEVEL PRESSURE
- gsod$stpressure <- as.numeric(STP)*10 # STATION PRESSURE
- gsod$tdew <- round(FtoC(as.numeric(DEWP)),1)*10 # MEAN DEW POINT
+ gsod$tavg <- round(FtoC(as.numeric(TEMP)),1)*10 # MEAN TEMP
+ gsod$slpressure <- as.numeric(SLP)*10 # SEA LEVEL PRESSURE
+ gsod$stpressure <- as.numeric(STP)*10 # STATION PRESSURE
+ gsod$tdew <- round(FtoC(as.numeric(DEWP)),1)*10 # MEAN DEW POINT
gsod$visibility <- round((as.numeric(VISIB) * 1.609344),1)*10 # VISIBILITY
##############################################
# WINDSPEED NEEDED IN ORYZA2k
- gsod$wind <- round(as.numeric(WDSP) * 0.514444444,1)*10 # WIND SPEED
- gsod$maxwind <- round(as.numeric(MXSPD) * 0.514444444,1)*10 # MAX SUSTAINED SPEED
- gsod$gust <- round(as.numeric(GUST) * 0.514444444,1)*10 # MAX GUST
+ gsod$wind <- round(as.numeric(WDSP) * 0.514444444,1)*10 # WIND SPEED
+ gsod$maxwind <- round(as.numeric(MXSPD) * 0.514444444,1)*10 # MAX SUSTAINED SPEED
+ gsod$gust <- round(as.numeric(GUST) * 0.514444444,1)*10 # MAX GUST
##############################################
# MAX T NEEDED IN ORYZA2k
@@ -77,9 +95,10 @@
gsod <- cbind(gsod, indicators, stringsAsFactors=FALSE)
result <- new('weather')
result at stn <- station
- result at lon <- x
- result at lat <- y
- result at alt <- alt
+ # TODO: get from database?
+ #result at lon <- x
+ #result at lat <- y
+ #result at alt <- alt
result at w <- gsod
}
}
Modified: pkg/geoclimate/R/nasa.r
===================================================================
--- pkg/geoclimate/R/nasa.r 2012-03-30 08:12:13 UTC (rev 18)
+++ pkg/geoclimate/R/nasa.r 2012-03-30 09:12:03 UTC (rev 19)
@@ -3,6 +3,7 @@
# Version 0.0.1
# Licence GPL v3
+#TODO option savefile or not
get.nasa <- function(x, y, stdate="1983-1-1", endate=Sys.Date(), savepath=getwd(), rm.existing=FALSE){
result <- vector()
if(length(x)!=1|length(y)!=1){
Added: pkg/geoclimate/inst/gsod_ref.csv
===================================================================
--- pkg/geoclimate/inst/gsod_ref.csv (rev 0)
+++ pkg/geoclimate/inst/gsod_ref.csv 2012-03-30 09:12:03 UTC (rev 19)
@@ -0,0 +1,15 @@
+procseq,variable,dbase,stpos,enpos,missing,datatype
+1,YEARMODA,wdate,15,22,,Int
+2,TEMP,tavg,25,30,9999.9,Real
+3,SLP,slpressure,47,52,9999.9,Real
+4,STP,stpressure,58,63,9999.9,Real
+5,DEWP,tdew,36,41,9999.9,Real
+6,VISIB,visibility,69,73,999.9,Real
+7,WDSP,wind,79,83,999.9,Real
+8,MXSPD,maxwind,89,93,999.9,Real
+9,GUST,gust,96,100,999.9,Real
+10,MAX,tmax,103,108,9999.9,Real
+11,MIN,tmin,111,116,9999.9,Real
+12,PRCP,prec,119,123,99.99,Real
+13,SNDP,snowdepth,126,130,999.9,Real
+14,FRSHTT,,133,138,,Int
Added: pkg/geoclimate/inst/gsod_stations.csv
===================================================================
--- pkg/geoclimate/inst/gsod_stations.csv (rev 0)
+++ pkg/geoclimate/inst/gsod_stations.csv 2012-03-30 09:12:03 UTC (rev 19)
@@ -0,0 +1,31468 @@
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[TRUNCATED]
To get the complete diff run:
svnlook diff /svnroot/rodbcext -r 19
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