[Robast-commits] r842 - branches/robast-1.0/pkg/RobAStBase/man
noreply at r-forge.r-project.org
noreply at r-forge.r-project.org
Tue Jun 16 09:41:27 CEST 2015
Author: ruckdeschel
Date: 2015-06-16 09:41:27 +0200 (Tue, 16 Jun 2015)
New Revision: 842
Modified:
branches/robast-1.0/pkg/RobAStBase/man/0RobAStBase-package.Rd
branches/robast-1.0/pkg/RobAStBase/man/BdStWeight-class.Rd
branches/robast-1.0/pkg/RobAStBase/man/BoundedWeight-class.Rd
branches/robast-1.0/pkg/RobAStBase/man/HampIC-class.Rd
branches/robast-1.0/pkg/RobAStBase/man/HampelWeight-class.Rd
branches/robast-1.0/pkg/RobAStBase/man/InfoPlotWrapper.Rd
branches/robast-1.0/pkg/RobAStBase/man/OptionalInfluenceCurve-Class.Rd
branches/robast-1.0/pkg/RobAStBase/man/RobAStBaseMASK.Rd
branches/robast-1.0/pkg/RobAStBase/man/RobAStControl-class.Rd
branches/robast-1.0/pkg/RobAStBase/man/RobWeight-class.Rd
branches/robast-1.0/pkg/RobAStBase/man/biastype-methods.Rd
branches/robast-1.0/pkg/RobAStBase/man/comparePlot.Rd
branches/robast-1.0/pkg/RobAStBase/man/cutoff-class.Rd
branches/robast-1.0/pkg/RobAStBase/man/cutoff.Rd
branches/robast-1.0/pkg/RobAStBase/man/ddPlot-methods.Rd
branches/robast-1.0/pkg/RobAStBase/man/generateICfct.Rd
branches/robast-1.0/pkg/RobAStBase/man/getBiasIC.Rd
branches/robast-1.0/pkg/RobAStBase/man/getBoundedIC.Rd
branches/robast-1.0/pkg/RobAStBase/man/getRiskIC.Rd
branches/robast-1.0/pkg/RobAStBase/man/getweight.Rd
branches/robast-1.0/pkg/RobAStBase/man/infoPlot.Rd
branches/robast-1.0/pkg/RobAStBase/man/internal_plots.Rd
branches/robast-1.0/pkg/RobAStBase/man/internals-qqplot.Rd
branches/robast-1.0/pkg/RobAStBase/man/internals.Rd
branches/robast-1.0/pkg/RobAStBase/man/internals_ddPlot.Rd
branches/robast-1.0/pkg/RobAStBase/man/interpolRisk-class.Rd
branches/robast-1.0/pkg/RobAStBase/man/kStepEstimator.Rd
branches/robast-1.0/pkg/RobAStBase/man/kStepEstimatorStart-methods.Rd
branches/robast-1.0/pkg/RobAStBase/man/makeIC-methods.Rd
branches/robast-1.0/pkg/RobAStBase/man/masked-methods.Rd
branches/robast-1.0/pkg/RobAStBase/man/mov2bckRef-methods.Rd
branches/robast-1.0/pkg/RobAStBase/man/normtype-methods.Rd
branches/robast-1.0/pkg/RobAStBase/man/oneStepEstimator.Rd
branches/robast-1.0/pkg/RobAStBase/man/outlyingPlotIC.Rd
branches/robast-1.0/pkg/RobAStBase/man/plot-methods.Rd
branches/robast-1.0/pkg/RobAStBase/man/qqplot.Rd
branches/robast-1.0/pkg/RobAStBase/man/rescaleFunction-methods.Rd
Log:
Mail-Adresse aktualisiert
Modified: branches/robast-1.0/pkg/RobAStBase/man/0RobAStBase-package.Rd
===================================================================
--- branches/robast-1.0/pkg/RobAStBase/man/0RobAStBase-package.Rd 2015-06-16 07:40:44 UTC (rev 841)
+++ branches/robast-1.0/pkg/RobAStBase/man/0RobAStBase-package.Rd 2015-06-16 07:41:27 UTC (rev 842)
@@ -1,56 +1,56 @@
-\name{RobAStBase-package}
-\alias{RobAStBase-package}
-\alias{RobAStBase}
-\docType{package}
-\title{
-Robust Asymptotic Statistics
-}
-\description{
-Base S4-classes and functions for robust asymptotic statistics.
-}
-\details{
-\tabular{ll}{
-Package: \tab RobAStBase \cr
-Version: \tab 1.0 \cr
-Date: \tab 2015-05-03 \cr
-Depends: \tab R(>= 2.14.0), methods, rrcov, distr(>= 2.5.2), distrEx(>= 2.5), distrMod(>= 2.5.2), RandVar(>= 0.9.2)\cr
-Suggests: \tab ROptEst, RUnit (>= 0.4.26)\cr
-Imports: \tab startupmsg\cr
-ByteCompile: \tab yes \cr
-License: \tab LGPL-3 \cr
-URL: \tab http://robast.r-forge.r-project.org/\cr
-SVNRevision: \tab 726 \cr
-}
-}
-\author{
-Peter Ruckdeschel \email{Peter.Ruckdeschel at itwm.fraunhofer.de},\cr%
-Matthias Kohl \email{Matthias.Kohl at stamats.de}\cr
-
-Maintainer: Matthias Kohl \email{matthias.kohl at stamats.de}}
-\references{
- M. Kohl (2005). Numerical Contributions to the Asymptotic Theory of Robustness.
- Dissertation. University of Bayreuth.
-}
-\seealso{
-\code{\link[distr:0distr-package]{distr-package}},
-\code{\link[distrEx:0distrEx-package]{distrEx-package}},
-\code{\link[distrMod:0distrMod-package]{distrMod-package}}
-}
-\section{Package versions}{
-Note: The first two numbers of package versions do not necessarily reflect
- package-individual development, but rather are chosen for the
- RobAStXXX family as a whole in order to ease updating "depends"
- information.
-}
-\examples{
-library(RobAStBase)
-
-## some L2 differentiable parametric family from package distrMod, e.g.
-B <- BinomFamily(size = 25, prob = 0.25)
-
-## classical optimal IC
-IC0 <- optIC(model = B, risk = asCov())
-plot(IC0) # plot IC
-checkIC(IC0, B)
-}
-\keyword{package}
+\name{RobAStBase-package}
+\alias{RobAStBase-package}
+\alias{RobAStBase}
+\docType{package}
+\title{
+Robust Asymptotic Statistics
+}
+\description{
+Base S4-classes and functions for robust asymptotic statistics.
+}
+\details{
+\tabular{ll}{
+Package: \tab RobAStBase \cr
+Version: \tab 1.0 \cr
+Date: \tab 2015-05-03 \cr
+Depends: \tab R(>= 2.14.0), methods, rrcov, distr(>= 2.5.2), distrEx(>= 2.5), distrMod(>= 2.5.2), RandVar(>= 0.9.2)\cr
+Suggests: \tab ROptEst, RUnit (>= 0.4.26)\cr
+Imports: \tab startupmsg\cr
+ByteCompile: \tab yes \cr
+License: \tab LGPL-3 \cr
+URL: \tab http://robast.r-forge.r-project.org/\cr
+SVNRevision: \tab 726 \cr
+}
+}
+\author{
+Peter Ruckdeschel \email{peter.ruckdeschel at uni-oldenburg.de},\cr%
+Matthias Kohl \email{Matthias.Kohl at stamats.de}\cr
+
+Maintainer: Matthias Kohl \email{matthias.kohl at stamats.de}}
+\references{
+ M. Kohl (2005). Numerical Contributions to the Asymptotic Theory of Robustness.
+ Dissertation. University of Bayreuth.
+}
+\seealso{
+\code{\link[distr:0distr-package]{distr-package}},
+\code{\link[distrEx:0distrEx-package]{distrEx-package}},
+\code{\link[distrMod:0distrMod-package]{distrMod-package}}
+}
+\section{Package versions}{
+Note: The first two numbers of package versions do not necessarily reflect
+ package-individual development, but rather are chosen for the
+ RobAStXXX family as a whole in order to ease updating "depends"
+ information.
+}
+\examples{
+library(RobAStBase)
+
+## some L2 differentiable parametric family from package distrMod, e.g.
+B <- BinomFamily(size = 25, prob = 0.25)
+
+## classical optimal IC
+IC0 <- optIC(model = B, risk = asCov())
+plot(IC0) # plot IC
+checkIC(IC0, B)
+}
+\keyword{package}
Modified: branches/robast-1.0/pkg/RobAStBase/man/BdStWeight-class.Rd
===================================================================
--- branches/robast-1.0/pkg/RobAStBase/man/BdStWeight-class.Rd 2015-06-16 07:40:44 UTC (rev 841)
+++ branches/robast-1.0/pkg/RobAStBase/man/BdStWeight-class.Rd 2015-06-16 07:41:27 UTC (rev 842)
@@ -44,7 +44,7 @@
Kohl, M. (2005) \emph{Numerical Contributions to the Asymptotic Theory of Robustness}.
Bayreuth: Dissertation.
}
-\author{Peter Ruckdeschel \email{Peter.Ruckdeschel at itwm.fraunhofer.de}}
+\author{Peter Ruckdeschel \email{peter.ruckdeschel at uni-oldenburg.de}}
%\note{}
\seealso{\code{\link{BoundedWeight-class}}, \code{\link{RobWeight-class}},
\code{\link{IC}}, \code{\link{InfluenceCurve-class}}}
Modified: branches/robast-1.0/pkg/RobAStBase/man/BoundedWeight-class.Rd
===================================================================
--- branches/robast-1.0/pkg/RobAStBase/man/BoundedWeight-class.Rd 2015-06-16 07:40:44 UTC (rev 841)
+++ branches/robast-1.0/pkg/RobAStBase/man/BoundedWeight-class.Rd 2015-06-16 07:41:27 UTC (rev 842)
@@ -40,7 +40,7 @@
Kohl, M. (2005) \emph{Numerical Contributions to the Asymptotic Theory of Robustness}.
Bayreuth: Dissertation.
}
-\author{Peter Ruckdeschel \email{Peter.Ruckdeschel at itwm.fraunhofer.de}}
+\author{Peter Ruckdeschel \email{peter.ruckdeschel at uni-oldenburg.de}}
%\note{}
\seealso{\code{\link{RobWeight-class}}, \code{\link{IC}}, \code{\link{InfluenceCurve-class}}}
\examples{
Modified: branches/robast-1.0/pkg/RobAStBase/man/HampIC-class.Rd
===================================================================
--- branches/robast-1.0/pkg/RobAStBase/man/HampIC-class.Rd 2015-06-16 07:40:44 UTC (rev 841)
+++ branches/robast-1.0/pkg/RobAStBase/man/HampIC-class.Rd 2015-06-16 07:41:27 UTC (rev 842)
@@ -97,7 +97,7 @@
Kohl, M. (2005) \emph{Numerical Hampributions to the Asymptotic Theory of Robustness}.
Bayreuth: Dissertation.
}
-\author{Peter Ruckdeschel \email{Peter.Ruckdeschel at itwm.fraunhofer.de}}
+\author{Peter Ruckdeschel \email{peter.ruckdeschel at uni-oldenburg.de}}
%\note{}
\seealso{\code{\link{IC-class}}}
\examples{
Modified: branches/robast-1.0/pkg/RobAStBase/man/HampelWeight-class.Rd
===================================================================
--- branches/robast-1.0/pkg/RobAStBase/man/HampelWeight-class.Rd 2015-06-16 07:40:44 UTC (rev 841)
+++ branches/robast-1.0/pkg/RobAStBase/man/HampelWeight-class.Rd 2015-06-16 07:41:27 UTC (rev 842)
@@ -46,7 +46,7 @@
Kohl, M. (2005) \emph{Numerical Contributions to the Asymptotic Theory of Robustness}.
Bayreuth: Dissertation.
}
-\author{Peter Ruckdeschel \email{Peter.Ruckdeschel at itwm.fraunhofer.de}}
+\author{Peter Ruckdeschel \email{peter.ruckdeschel at uni-oldenburg.de}}
%\note{}
\seealso{\code{\link{BdStWeight-class}},
\code{\link{BoundedWeight-class}}, \code{\link{RobWeight-class}},
Modified: branches/robast-1.0/pkg/RobAStBase/man/InfoPlotWrapper.Rd
===================================================================
--- branches/robast-1.0/pkg/RobAStBase/man/InfoPlotWrapper.Rd 2015-06-16 07:40:44 UTC (rev 841)
+++ branches/robast-1.0/pkg/RobAStBase/man/InfoPlotWrapper.Rd 2015-06-16 07:41:27 UTC (rev 842)
@@ -1,49 +1,49 @@
-\name{InfoPlot}
-\alias{InfoPlot}
-\title{Wrapper function for information plot method}
-\usage{
- InfoPlot(IC, data, ..., alpha.trsp = 100,
- with.legend = TRUE, rescale = FALSE, withCall = TRUE)
-}
-\arguments{
- \item{IC}{object of class \code{IC}}
-
- \item{data}{optional data argument --- for plotting
- observations into the plot}
-
- \item{...}{additional parameters (in particular to be
- passed on to \code{plot})}
-
- \item{alpha.trsp}{the transparency argument (0 to 100)
- for ploting the data}
-
- \item{with.legend}{the flag for showing the legend of the
- plot}
-
- \item{rescale}{the flag for rescaling the axes for better
- view of the plot}
-
- \item{withCall}{the flag for the call output}
-}
-\value{
- invisible(NULL)
-}
-\description{
- The wrapper takes most of arguments to the plot method by
- default and gives a user possibility to run the function
- with low number of arguments
-}
-\section{Details}{
- Calls \code{infoPlot} with suitably chosen defaults. If
- \code{withCall == TRUE}, the call to \code{infoPlot} is
- returned
-}
-\examples{
-# Gamma
-fam <- GammaFamily()
-IC <- optIC(model = fam, risk = asCov())
-Y <- distribution(fam)
-data <- r(Y)(500)
-InfoPlot(IC, data, withCall = FALSE)
-}
-
+\name{InfoPlot}
+\alias{InfoPlot}
+\title{Wrapper function for information plot method}
+\usage{
+ InfoPlot(IC, data, ..., alpha.trsp = 100,
+ with.legend = TRUE, rescale = FALSE, withCall = TRUE)
+}
+\arguments{
+ \item{IC}{object of class \code{IC}}
+
+ \item{data}{optional data argument --- for plotting
+ observations into the plot}
+
+ \item{...}{additional parameters (in particular to be
+ passed on to \code{plot})}
+
+ \item{alpha.trsp}{the transparency argument (0 to 100)
+ for ploting the data}
+
+ \item{with.legend}{the flag for showing the legend of the
+ plot}
+
+ \item{rescale}{the flag for rescaling the axes for better
+ view of the plot}
+
+ \item{withCall}{the flag for the call output}
+}
+\value{
+ invisible(NULL)
+}
+\description{
+ The wrapper takes most of arguments to the plot method by
+ default and gives a user possibility to run the function
+ with low number of arguments
+}
+\section{Details}{
+ Calls \code{infoPlot} with suitably chosen defaults. If
+ \code{withCall == TRUE}, the call to \code{infoPlot} is
+ returned
+}
+\examples{
+# Gamma
+fam <- GammaFamily()
+IC <- optIC(model = fam, risk = asCov())
+Y <- distribution(fam)
+data <- r(Y)(500)
+InfoPlot(IC, data, withCall = FALSE)
+}
+
Modified: branches/robast-1.0/pkg/RobAStBase/man/OptionalInfluenceCurve-Class.Rd
===================================================================
--- branches/robast-1.0/pkg/RobAStBase/man/OptionalInfluenceCurve-Class.Rd 2015-06-16 07:40:44 UTC (rev 841)
+++ branches/robast-1.0/pkg/RobAStBase/man/OptionalInfluenceCurve-Class.Rd 2015-06-16 07:41:27 UTC (rev 842)
@@ -42,7 +42,7 @@
Kohl, M. (2005) \emph{Numerical Contributions to the Asymptotic Theory of Robustness}.
Bayreuth: Dissertation.
}
-\author{Peter Ruckdeschel \email{peter.ruckdeschel at itwm.fraunhofer.de}}
+\author{Peter Ruckdeschel \email{peter.ruckdeschel at uni-oldenburg.de}}
%\note{}
\seealso{\code{\link{InfluenceCurve}}, \code{\link[distrMod]{RiskType-class}}}
\concept{influence curve}
Modified: branches/robast-1.0/pkg/RobAStBase/man/RobAStBaseMASK.Rd
===================================================================
--- branches/robast-1.0/pkg/RobAStBase/man/RobAStBaseMASK.Rd 2015-06-16 07:40:44 UTC (rev 841)
+++ branches/robast-1.0/pkg/RobAStBase/man/RobAStBaseMASK.Rd 2015-06-16 07:41:27 UTC (rev 842)
@@ -16,7 +16,7 @@
\value{no value is returned
}
-\author{Peter Ruckdeschel \email{Peter.Ruckdeschel at itwm.fraunhofer.de}}
+\author{Peter Ruckdeschel \email{peter.ruckdeschel at uni-oldenburg.de}}
\examples{
RobAStBaseMASK()
}
Modified: branches/robast-1.0/pkg/RobAStBase/man/RobAStControl-class.Rd
===================================================================
--- branches/robast-1.0/pkg/RobAStBase/man/RobAStControl-class.Rd 2015-06-16 07:40:44 UTC (rev 841)
+++ branches/robast-1.0/pkg/RobAStBase/man/RobAStControl-class.Rd 2015-06-16 07:41:27 UTC (rev 842)
@@ -33,7 +33,7 @@
Kohl, M. (2005) \emph{Numerical Contributions to the Asymptotic Theory of Robustness}.
Bayreuth: Dissertation.
}
-\author{Peter Ruckdeschel \email{Peter.Ruckdeschel at itwm.fraunhofer.de}}
+\author{Peter Ruckdeschel \email{peter.ruckdeschel at uni-oldenburg.de}}
%\note{}
%\seealso{}
%\examples{}
Modified: branches/robast-1.0/pkg/RobAStBase/man/RobWeight-class.Rd
===================================================================
--- branches/robast-1.0/pkg/RobAStBase/man/RobWeight-class.Rd 2015-06-16 07:40:44 UTC (rev 841)
+++ branches/robast-1.0/pkg/RobAStBase/man/RobWeight-class.Rd 2015-06-16 07:41:27 UTC (rev 842)
@@ -44,7 +44,7 @@
Kohl, M. (2005) \emph{Numerical Contributions to the Asymptotic Theory of Robustness}.
Bayreuth: Dissertation.
}
-\author{Peter Ruckdeschel \email{Peter.Ruckdeschel at itwm.fraunhofer.de}}
+\author{Peter Ruckdeschel \email{peter.ruckdeschel at uni-oldenburg.de}}
%\note{}
\seealso{\code{\link{InfluenceCurve-class}}, \code{\link{IC}}}
\examples{
Modified: branches/robast-1.0/pkg/RobAStBase/man/biastype-methods.Rd
===================================================================
--- branches/robast-1.0/pkg/RobAStBase/man/biastype-methods.Rd 2015-06-16 07:40:44 UTC (rev 841)
+++ branches/robast-1.0/pkg/RobAStBase/man/biastype-methods.Rd 2015-06-16 07:41:27 UTC (rev 842)
@@ -1,18 +1,18 @@
-\name{biastype-methods}
-\docType{methods}
-\alias{biastype,interpolRisk-method}
-\alias{biastype}
-\title{Methods for Function biastype in Package `RobAStBase'}
-\description{biastype-methods}
-
-\section{Methods}{\describe{
-
-\item{biastype}{\code{signature(object = "interpolrisk")}:
- returns the slot \code{biastype} of an object of class \code{"interpolrisk"}. }
-}}
-\examples{
-myrisk <- MBRRisk(samplesize=100)
-biastype(myrisk)
-}
-\concept{risk}
-\keyword{classes}
+\name{biastype-methods}
+\docType{methods}
+\alias{biastype,interpolRisk-method}
+\alias{biastype}
+\title{Methods for Function biastype in Package `RobAStBase'}
+\description{biastype-methods}
+
+\section{Methods}{\describe{
+
+\item{biastype}{\code{signature(object = "interpolrisk")}:
+ returns the slot \code{biastype} of an object of class \code{"interpolrisk"}. }
+}}
+\examples{
+myrisk <- MBRRisk(samplesize=100)
+biastype(myrisk)
+}
+\concept{risk}
+\keyword{classes}
Modified: branches/robast-1.0/pkg/RobAStBase/man/comparePlot.Rd
===================================================================
--- branches/robast-1.0/pkg/RobAStBase/man/comparePlot.Rd 2015-06-16 07:40:44 UTC (rev 841)
+++ branches/robast-1.0/pkg/RobAStBase/man/comparePlot.Rd 2015-06-16 07:41:27 UTC (rev 842)
@@ -27,9 +27,10 @@
scaleN = 9, x.ticks = NULL, y.ticks = NULL,
mfColRow = TRUE, to.draw.arg = NULL,
cex.pts = 1, cex.pts.fun = NULL, col.pts = par("col"),
- pch.pts = 1, jitter.fac = 1, with.lab = FALSE,
+ pch.pts = 1, jit.fac = 1, jit.tol = .Machine$double.eps, with.lab = FALSE,
lab.pts = NULL, lab.font = NULL, alpha.trsp = NA,
which.lbs = NULL, which.Order = NULL, return.Order = FALSE,
+ draw.nonlbl = TRUE, cex.nonlbl=0.3, pch.nonlbl=".",
withSubst = TRUE)
}
\arguments{
@@ -160,8 +161,10 @@
while for the remaining ones, the alpha channel in rgb space is set
to the respective coordinate value of \code{alpha.trsp}. The non-NA
entries must be integers in [0,255] (0 invisible, 255 opaque).}
- \item{jitter.fac}{jittering factor used in case of a \code{DiscreteDistribution}
+ \item{jit.fac}{jittering factor used in case of a \code{DiscreteDistribution}
for plotting points of the \code{data} argument in a jittered fashion.}
+ \item{jit.tol}{threshold for jittering: if distance between points is smaller
+ than \code{jit.tol}, points are considered replicates.}
\item{which.lbs}{either an integer vector with the indices of the observations
to be plotted into graph or \code{NULL} --- then no observation is excluded}
\item{which.Order}{for each of the given ICs, we order the observations (descending)
@@ -177,6 +180,9 @@
reduction by argument \code{which.lbs}, and ordering is according to the norm given by
\code{normtype(object)});
othervise we return \code{invisible()} as usual.}
+ \item{draw.nonlbl}{logical; should non-labelled observations be drawn?}
+ \item{cex.nonlbl}{character expansion(s) for non-labelled observations}
+ \item{pch.nonlbl}{plotting symbol(s) for non-labelled observations}
\item{\dots}{further arguments to be passed to \code{plot}}
}
\details{
@@ -223,7 +229,7 @@
Kohl, M. (2005) \emph{Numerical Contributions to the Asymptotic Theory of Robustness}.
Bayreuth: Dissertation.
}
-\author{Peter Ruckdeschel \email{Peter.Ruckdeschel at itwm.fraunhofer.de}}
+\author{Peter Ruckdeschel \email{peter.ruckdeschel at uni-oldenburg.de}}
%\note{}
\seealso{\code{\link[distrMod]{L2ParamFamily-class}},
\code{\link{IC-class}}, \code{\link[graphics]{plot}}}
Modified: branches/robast-1.0/pkg/RobAStBase/man/cutoff-class.Rd
===================================================================
--- branches/robast-1.0/pkg/RobAStBase/man/cutoff-class.Rd 2015-06-16 07:40:44 UTC (rev 841)
+++ branches/robast-1.0/pkg/RobAStBase/man/cutoff-class.Rd 2015-06-16 07:41:27 UTC (rev 842)
@@ -56,7 +56,7 @@
}
}
-\author{Peter Ruckdeschel \email{Peter.Ruckdeschel at itwm.fraunhofer.de}}
+\author{Peter Ruckdeschel \email{peter.ruckdeschel at uni-oldenburg.de}}
%\note{}
\seealso{\code{\link{ddPlot}}, \code{\link{outlyingPlotIC}} \code{\link{cutoff}}}
\examples{
Modified: branches/robast-1.0/pkg/RobAStBase/man/cutoff.Rd
===================================================================
--- branches/robast-1.0/pkg/RobAStBase/man/cutoff.Rd 2015-06-16 07:40:44 UTC (rev 841)
+++ branches/robast-1.0/pkg/RobAStBase/man/cutoff.Rd 2015-06-16 07:41:27 UTC (rev 842)
@@ -60,7 +60,7 @@
}
\value{Object of class \code{"cutoff"}.}
\author{
- Peter Ruckdeschel \email{Peter.Ruckdeschel at itwm.fraunhofer.de}
+ Peter Ruckdeschel \email{peter.ruckdeschel at uni-oldenburg.de}
}
%\note{}
\seealso{\code{\link{cutoff-class}}, \code{\link{ddPlot}} }
Modified: branches/robast-1.0/pkg/RobAStBase/man/ddPlot-methods.Rd
===================================================================
--- branches/robast-1.0/pkg/RobAStBase/man/ddPlot-methods.Rd 2015-06-16 07:40:44 UTC (rev 841)
+++ branches/robast-1.0/pkg/RobAStBase/man/ddPlot-methods.Rd 2015-06-16 07:41:27 UTC (rev 842)
@@ -13,7 +13,7 @@
cutoff.x, cutoff.y, ...,
cutoff.quantile.x = 0.95, cutoff.quantile.y = cutoff.quantile.x,
transform.x, transform.y = transform.x,
- id.n, cex.pts = 1,lab.pts, jitt.pts = 0, alpha.trsp = NA, adj =0, cex.idn,
+ id.n, cex.pts = 1,lab.pts, jit.pts = 0, alpha.trsp = NA, adj =0, cex.idn,
col.idn, lty.cutoff, lwd.cutoff, col.cutoff, text.abline = TRUE,
text.abline.x = NULL, text.abline.y = NULL,
cex.abline = par("cex"), col.abline = col.cutoff,
@@ -22,12 +22,12 @@
text.abline.y.x = NULL, text.abline.y.y = NULL,
text.abline.x.fmt.cx = "\%7.2f", text.abline.x.fmt.qx = "\%4.2f\%\%",
text.abline.y.fmt.cy = "\%7.2f", text.abline.y.fmt.qy = "\%4.2f\%\%",
- jitt.fac, doplot = TRUE)
+ jit.fac, jit.tol = .Machine$double.eps,doplot = TRUE)
\S4method{ddPlot}{numeric}(data, dist.x = NormType(), dist.y = NormType(),
cutoff.x, cutoff.y, ...,
cutoff.quantile.x = 0.95, cutoff.quantile.y = cutoff.quantile.x,
transform.x, transform.y = transform.x,
- id.n, cex.pts = 1,lab.pts, jitt.pts = 0, alpha.trsp = NA, adj =0, cex.idn,
+ id.n, cex.pts = 1,lab.pts, jit.pts = 0, alpha.trsp = NA, adj =0, cex.idn,
col.idn, lty.cutoff, lwd.cutoff, col.cutoff, text.abline = TRUE,
text.abline.x = NULL, text.abline.y = NULL,
cex.abline = par("cex"), col.abline = col.cutoff,
@@ -36,12 +36,12 @@
text.abline.y.x = NULL, text.abline.y.y = NULL,
text.abline.x.fmt.cx = "\%7.2f", text.abline.x.fmt.qx = "\%4.2f\%\%",
text.abline.y.fmt.cy = "\%7.2f", text.abline.y.fmt.qy = "\%4.2f\%\%",
- jitt.fac, doplot = TRUE)
+ jit.fac, jit.tol=.Machine$double.eps, doplot = TRUE)
\S4method{ddPlot}{data.frame}(data, dist.x = NormType(), dist.y = NormType(),
cutoff.x, cutoff.y, ...,
cutoff.quantile.x = 0.95, cutoff.quantile.y = cutoff.quantile.x,
transform.x, transform.y = transform.x,
- id.n, cex.pts = 1,lab.pts, jitt.pts = 0, alpha.trsp = NA, adj =0, cex.idn,
+ id.n, cex.pts = 1,lab.pts, jit.pts = 0, alpha.trsp = NA, adj =0, cex.idn,
col.idn, lty.cutoff, lwd.cutoff, col.cutoff, text.abline = TRUE,
text.abline.x = NULL, text.abline.y = NULL,
cex.abline = par("cex"), col.abline = col.cutoff,
@@ -50,7 +50,7 @@
text.abline.y.x = NULL, text.abline.y.y = NULL,
text.abline.x.fmt.cx = "\%7.2f", text.abline.x.fmt.qx = "\%4.2f\%\%",
text.abline.y.fmt.cy = "\%7.2f", text.abline.y.fmt.qy = "\%4.2f\%\%",
- jitt.fac, doplot = TRUE)
+ jit.fac, jit.tol=.Machine$double.eps, doplot = TRUE)
}
\arguments{
\item{data}{data coercable to \code{matrix}; the data at which to produce the \code{ddPlot}.}
@@ -71,7 +71,7 @@
of the data in argument \code{data}.}
\item{cex.pts}{the corresponding \code{cex} argument for plotted points.}
\item{lab.pts}{a vector of labels for the (unsubsetted) \code{data}.}
- \item{jitt.pts}{the corresponding \code{jitter} argument for plotted points;
+ \item{jit.pts}{the corresponding \code{jitter} argument for plotted points;
may be a vector of length 2 -- for separate factors for x- and y-coordinate.}
\item{alpha.trsp}{alpha transparency to be added ex post to colors
\code{col.pch} and \code{col.lbl}; if one-dim and NA all colors are
@@ -119,7 +119,9 @@
\item{text.abline.x.fmt.qx}{format string to format cutoff probability in label in x direction.}
\item{text.abline.y.fmt.cy}{format string to format the cutoff value in label in y direction.}
\item{text.abline.y.fmt.qy}{format string to format cutoff probability in label in y direction.}
- \item{jitt.fac}{factor for jittering, see \code{jitter};}
+ \item{jit.fac}{factor for jittering, see \code{jitter};}
+ \item{jit.tol}{threshold for jittering: if distance between points is smaller
+ than \code{jit.tol}, points are considered replicates.}
\item{doplot}{logical; shall a plot be produced? if \code{FALSE} only the return values are produced.}
}
\details{
@@ -148,7 +150,7 @@
\item{cutoff.y.v}{the cutoff value in \code{y} direction}
}
\author{
- Peter Ruckdeschel \email{Peter.Ruckdeschel at itwm.fraunhofer.de}
+ Peter Ruckdeschel \email{peter.ruckdeschel at uni-oldenburg.de}
}
\examples{
Modified: branches/robast-1.0/pkg/RobAStBase/man/generateICfct.Rd
===================================================================
--- branches/robast-1.0/pkg/RobAStBase/man/generateICfct.Rd 2015-06-16 07:40:44 UTC (rev 841)
+++ branches/robast-1.0/pkg/RobAStBase/man/generateICfct.Rd 2015-06-16 07:41:27 UTC (rev 842)
@@ -27,7 +27,7 @@
Kohl, M. (2005) \emph{Numerical Contributions to the Asymptotic Theory of Robustness}.
Bayreuth: Dissertation.
}
-\author{Peter Ruckdeschel \email{Peter.Ruckdeschel at itwm.fraunhofer.de}}
+\author{Peter Ruckdeschel \email{peter.ruckdeschel at uni-oldenburg.de}}
%\note{}
\seealso{\code{\link[distrMod]{L2ParamFamily-class}}, \code{\link{IC-class}}}
%\examples{}
Modified: branches/robast-1.0/pkg/RobAStBase/man/getBiasIC.Rd
===================================================================
--- branches/robast-1.0/pkg/RobAStBase/man/getBiasIC.Rd 2015-06-16 07:40:44 UTC (rev 841)
+++ branches/robast-1.0/pkg/RobAStBase/man/getBiasIC.Rd 2015-06-16 07:41:27 UTC (rev 842)
@@ -58,7 +58,7 @@
Ruckdeschel, P. and Kohl, M. (2005) Computation of the Finite Sample Bias
of M-estimators on Neighborhoods.
}
-\author{Peter Ruckdeschel \email{Peter.Ruckdeschel at itwm.fraunhofer.de}}
+\author{Peter Ruckdeschel \email{peter.ruckdeschel at uni-oldenburg.de}}
\note{This generic function is still under construction.}
\seealso{\code{\link{getRiskIC-methods}}, \code{\link{InfRobModel-class}}}
%\examples{}
Modified: branches/robast-1.0/pkg/RobAStBase/man/getBoundedIC.Rd
===================================================================
--- branches/robast-1.0/pkg/RobAStBase/man/getBoundedIC.Rd 2015-06-16 07:40:44 UTC (rev 841)
+++ branches/robast-1.0/pkg/RobAStBase/man/getBoundedIC.Rd 2015-06-16 07:41:27 UTC (rev 842)
@@ -20,7 +20,7 @@
}
\author{
- Peter Ruckdeschel \email{Peter.Ruckdeschel at itwm.fraunhofer.de}
+ Peter Ruckdeschel \email{peter.ruckdeschel at uni-oldenburg.de}
}
%\note{}
\concept{robust model}
Modified: branches/robast-1.0/pkg/RobAStBase/man/getRiskIC.Rd
===================================================================
--- branches/robast-1.0/pkg/RobAStBase/man/getRiskIC.Rd 2015-06-16 07:40:44 UTC (rev 841)
+++ branches/robast-1.0/pkg/RobAStBase/man/getRiskIC.Rd 2015-06-16 07:41:27 UTC (rev 842)
@@ -114,7 +114,7 @@
of M-estimators on Neighborhoods.
}
\author{Matthias Kohl \email{Matthias.Kohl at stamats.de}\cr
- Peter Ruckdeschel \email{Peter.Ruckdeschel at itwm.fraunhofer.de}}
+ Peter Ruckdeschel \email{peter.ruckdeschel at uni-oldenburg.de}}
\note{This generic function is still under construction.}
\seealso{\code{\link[ROptEst]{getRiskIC}}, \code{\link{InfRobModel-class}}}
%\examples{}
Modified: branches/robast-1.0/pkg/RobAStBase/man/getweight.Rd
===================================================================
--- branches/robast-1.0/pkg/RobAStBase/man/getweight.Rd 2015-06-16 07:40:44 UTC (rev 841)
+++ branches/robast-1.0/pkg/RobAStBase/man/getweight.Rd 2015-06-16 07:41:27 UTC (rev 842)
@@ -70,7 +70,7 @@
biastype = "BiasType")}: produces weight slot...}
}}
-\author{Peter Ruckdeschel \email{Peter.Ruckdeschel at itwm.fraunhofer.de}}
+\author{Peter Ruckdeschel \email{peter.ruckdeschel at uni-oldenburg.de}}
%\note{}
\seealso{\code{\link{BdStWeight-class}},
\code{\link{HampelWeight-class}},
Modified: branches/robast-1.0/pkg/RobAStBase/man/infoPlot.Rd
===================================================================
--- branches/robast-1.0/pkg/RobAStBase/man/infoPlot.Rd 2015-06-16 07:40:44 UTC (rev 841)
+++ branches/robast-1.0/pkg/RobAStBase/man/infoPlot.Rd 2015-06-16 07:41:27 UTC (rev 842)
@@ -24,9 +24,10 @@
scaleN = 9, x.ticks = NULL, y.ticks = NULL,
mfColRow = TRUE, to.draw.arg = NULL,
cex.pts = 1, cex.pts.fun = NULL, col.pts = par("col"),
- pch.pts = 1, jitter.fac = 1, with.lab = FALSE,
+ pch.pts = 1, jit.fac = 1, jit.tol = .Machine$double.eps, with.lab = FALSE,
lab.pts = NULL, lab.font = NULL, alpha.trsp = NA,
which.lbs = NULL, which.Order = NULL, return.Order = FALSE,
+ draw.nonlbl = TRUE, cex.nonlbl=0.3, pch.nonlbl=".",
ylab.abs = "absolute information",
ylab.rel= "relative information",
withSubst = TRUE)
@@ -158,8 +159,10 @@
while for the remaining ones, the alpha channel in rgb space is set
to the respective coordinate value of \code{alpha.trsp}. The non-NA
entries must be integers in [0,255] (0 invisible, 255 opaque).}
- \item{jitter.fac}{jittering factor used in case of a \code{DiscreteDistribution}
+ \item{jit.fac}{jittering factor used in case of a \code{DiscreteDistribution}
for plotting points of the \code{data} argument in a jittered fashion.}
+ \item{jit.tol}{threshold for jittering: if distance between points is smaller
+ than \code{jit.tol}, points are considered replicates.}
\item{which.lbs}{either an integer vector with the indices of the observations
to be plotted into graph or \code{NULL} --- then no observation is excluded}
\item{which.Order}{we order the observations (descending) according to the norm given by
@@ -175,6 +178,9 @@
reduction by argument \code{which.lbs}, and ordering is according to the norm given by
\code{normtype(object)});
otherwise we return \code{invisible()} as usual.}
+ \item{draw.nonlbl}{logical; should non-labelled observations be drawn?}
+ \item{cex.nonlbl}{character expansion(s) for non-labelled observations}
+ \item{pch.nonlbl}{plotting symbol(s) for non-labelled observations}
\item{ylab.abs}{character; label to be used for y-axis in absolute information panel}
\item{ylab.rel}{character; label to be used for y-axis in relative information panel}
\item{\dots}{further parameters for \code{plot}}
Modified: branches/robast-1.0/pkg/RobAStBase/man/internal_plots.Rd
===================================================================
--- branches/robast-1.0/pkg/RobAStBase/man/internal_plots.Rd 2015-06-16 07:40:44 UTC (rev 841)
+++ branches/robast-1.0/pkg/RobAStBase/man/internal_plots.Rd 2015-06-16 07:41:27 UTC (rev 842)
@@ -124,7 +124,10 @@
\code{data}, ie., the selected/thinned out data, \code{y}, ie., the
values of \code{fct(data)}, \code{ind}, ie., the indices of the selected data
in the original data (after possibly two selections), and \code{ind1} the
-indices of the data selected by \code{which.lbs} in the original data.
+indices of the data selected by \code{which.lbs} in the original data; in
+addition also the non selected data, \code{data.ns}, the respective
+y-values \code{y.ns} and the corresponding index elements \code{ind.ns} are
+returned as list items.
\code{.makedotsP} and \code{.makedotsLowLevel} manipulate the \code{\dots}
argument, deleting certain items and selecting items which can be digested by
Modified: branches/robast-1.0/pkg/RobAStBase/man/internals-qqplot.Rd
===================================================================
--- branches/robast-1.0/pkg/RobAStBase/man/internals-qqplot.Rd 2015-06-16 07:40:44 UTC (rev 841)
+++ branches/robast-1.0/pkg/RobAStBase/man/internals-qqplot.Rd 2015-06-16 07:41:27 UTC (rev 842)
@@ -32,7 +32,7 @@
}
\author{
- Peter Ruckdeschel \email{Peter.Ruckdeschel at itwm.fraunhofer.de},
+ Peter Ruckdeschel \email{peter.ruckdeschel at uni-oldenburg.de},
}
\seealso{\code{\link[stats]{ks.test}}, \code{\link[distr]{qqplot}}
Modified: branches/robast-1.0/pkg/RobAStBase/man/internals.Rd
===================================================================
--- branches/robast-1.0/pkg/RobAStBase/man/internals.Rd 2015-06-16 07:40:44 UTC (rev 841)
+++ branches/robast-1.0/pkg/RobAStBase/man/internals.Rd 2015-06-16 07:41:27 UTC (rev 842)
@@ -38,7 +38,7 @@
\author{
- Peter Ruckdeschel \email{Peter.Ruckdeschel at itwm.fraunhofer.de}
+ Peter Ruckdeschel \email{peter.ruckdeschel at uni-oldenburg.de}
}
\keyword{internal}
Modified: branches/robast-1.0/pkg/RobAStBase/man/internals_ddPlot.Rd
===================================================================
--- branches/robast-1.0/pkg/RobAStBase/man/internals_ddPlot.Rd 2015-06-16 07:40:44 UTC (rev 841)
+++ branches/robast-1.0/pkg/RobAStBase/man/internals_ddPlot.Rd 2015-06-16 07:41:27 UTC (rev 842)
@@ -13,7 +13,7 @@
cutoff.y = cutoff(norm = dist.y, cutoff.quantile = cutoff.quantile.y),
cutoff.quantile.x = 0.95, cutoff.quantile.y = cutoff.quantile.x,
transform.x, transform.y = transform.x,
- id.n, cex.pts = 1,lab.pts, jitt.pts = 0, alpha.trsp = NA, adj =0, cex.idn,
+ id.n, cex.pts = 1,lab.pts, jit.pts = 0, alpha.trsp = NA, adj =0, cex.idn,
col.idn, lty.cutoff,
lwd.cutoff, col.cutoff = "red", text.abline = TRUE,
text.abline.x = NULL, text.abline.y = NULL,
@@ -23,7 +23,7 @@
text.abline.y.x = NULL, text.abline.y.y = NULL,
text.abline.x.fmt.cx = "\%7.2f", text.abline.x.fmt.qx = "\%4.2f\%\%",
text.abline.y.fmt.cy = "\%7.2f", text.abline.y.fmt.qy = "\%4.2f\%\%",
- jitt.fac, doplot = TRUE)
+ jit.fac, jit.tol=.Machine$double.eps, doplot = TRUE)
}
\arguments{
\item{data}{data in \code{matrix} form (columns are observations; rows are variable
@@ -45,7 +45,7 @@
of the data in argument \code{data}.}
\item{cex.pts}{the corresponding \code{cex} argument for plotted points.}
\item{lab.pts}{a vector of labels for the (unsubsetted) \code{data}.}
- \item{jitt.pts}{the corresponding \code{jitter} argument for plotted points;
+ \item{jit.pts}{the corresponding \code{jitter} argument for plotted points;
may be a vector of length 2 -- for separate factors for x- and y-coordinate.}
\item{alpha.trsp}{alpha transparency to be added ex post to colors
\code{col.pch} and \code{col.lbl}; if one-dim and NA all colors are
@@ -93,7 +93,9 @@
\item{text.abline.x.fmt.qx}{format string to format cutoff probability in label in x direction.}
\item{text.abline.y.fmt.cy}{format string to format the cutoff value in label in y direction.}
\item{text.abline.y.fmt.qy}{format string to format cutoff probability in label in y direction.}
- \item{jitt.fac}{factor for jittering, see \code{jitter};}
+ \item{jit.fac}{factor for jittering, see \code{jitter};}
+ \item{jit.tol}{threshold for jittering: if distance between points is smaller
+ than \code{jit.tol}, points are considered replicates.}
\item{doplot}{logical; shall a plot be produced? if \code{FALSE} only the return values are produced.}
}
@@ -125,7 +127,7 @@
\author{
- Peter Ruckdeschel \email{Peter.Ruckdeschel at itwm.fraunhofer.de}
+ Peter Ruckdeschel \email{peter.ruckdeschel at uni-oldenburg.de}
}
\seealso{\code{\link[graphics]{plot.default}}, \code{\link[graphics]{par}},
\code{\link{ddPlot}}, \code{\link{outlyingPlotIC}}}
Modified: branches/robast-1.0/pkg/RobAStBase/man/interpolRisk-class.Rd
===================================================================
--- branches/robast-1.0/pkg/RobAStBase/man/interpolRisk-class.Rd 2015-06-16 07:40:44 UTC (rev 841)
+++ branches/robast-1.0/pkg/RobAStBase/man/interpolRisk-class.Rd 2015-06-16 07:41:27 UTC (rev 842)
@@ -40,7 +40,7 @@
and for which there is a replacement and an accessor method.
}
%\references{}
[TRUNCATED]
To get the complete diff run:
svnlook diff /svnroot/robast -r 842
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