[Robast-commits] r709 - pkg/RobLoxBioC

[noreply at r-forge.r-project.org]

Author: stamats
Date: 2013-09-12 13:00:21 +0200 (Thu, 12 Sep 2013)
New Revision: 709

Modified:
   pkg/RobLoxBioC/DESCRIPTION
   pkg/RobLoxBioC/NAMESPACE
Log:
some changes to description and namespace file

Modified: pkg/RobLoxBioC/DESCRIPTION
===================================================================
--- pkg/RobLoxBioC/DESCRIPTION	2013-09-12 10:26:05 UTC (rev 708)
+++ pkg/RobLoxBioC/DESCRIPTION	2013-09-12 11:00:21 UTC (rev 709)
@@ -4,8 +4,8 @@
 Title: Infinitesimally robust estimators for preprocessing omics data
 Description: Functions for the determination of optimally robust influence curves and
         estimators for preprocessing omics data, in particular gene expression data.
-Depends: R(>= 2.14.0), methods, Biobase, affy, beadarray, distr(>= 2.5.2), RobLox(>= 0.9.2), lattice,
-        RColorBrewer,BiocGenerics,distrMod(>= 2.5.2)
+Depends: R(>= 2.14.0), methods, RobLox(>= 0.9), affy
+Imports: BiocGenerics, Biobase, beadarray, lattice, RColorBrewer, distr(>= 2.5.2)
 Author: Matthias Kohl <Matthias.Kohl at stamats.de>
 Maintainer: Matthias Kohl <Matthias.Kohl at stamats.de>
 LazyLoad: yes

Modified: pkg/RobLoxBioC/NAMESPACE
===================================================================
--- pkg/RobLoxBioC/NAMESPACE	2013-09-12 10:26:05 UTC (rev 708)
+++ pkg/RobLoxBioC/NAMESPACE	2013-09-12 11:00:21 UTC (rev 709)
@@ -1,15 +1,15 @@
 import("methods", "distr")
-importMethodsFrom("distrMod","estimate")
-importFrom("RColorBrewer","brewer.pal")
-importFrom("lattice","stripplot")
 importMethodsFrom("BiocGenerics","append","annotation")
 importFrom("Biobase","assayDataNew")
+importFrom("lattice","stripplot")
+importFrom("RColorBrewer","brewer.pal")
 importClassesFrom("Biobase","ExpressionSet","AssayData","AnnotatedDataFrame")
 importMethodsFrom("Biobase", "rowMedians", "featureNames", "sampleNames", 
            "phenoData", "experimentData", "exprs", "exprs<-", "assayData","assayData<-")
-importFrom("affy","bg.correct.mas","getCdfInfo")
+importFrom("affy","bg.correct.mas","getCdfInfo","tukey.biweight")
 importMethodsFrom("affy","intensity")
 import("beadarray")
 importFrom("RobLox", "rowRoblox", "finiteSampleCorrection")
+
 exportMethods("robloxbioc", "KolmogorovMinDist")
 export("AffySimStudy", "IlluminaSimStudy")