From alex.galda at gmail.com Tue Feb 5 20:17:39 2019 From: alex.galda at gmail.com (Alexey Galda) Date: Tue, 5 Feb 2019 13:17:39 -0600 Subject: [Rnomads-user] DODS working (for now) In-Reply-To: <464791232.3867443.1546097983243@mail.yahoo.com> References: <464791232.3867443.1546097983243@mail.yahoo.com> Message-ID: Hi there, Something stopped working again. GetDODSDates() returns: Error in seq.default(max(i), length(lines)) : > 'from' must be a finite number > In addition: Warning messages: > 1: In max(i) : no non-missing arguments to max; returning -Inf > 2: In max(i) : no non-missing arguments to max; returning -Inf Cheers, Alexey On Sat, 29 Dec 2018 at 09:39, Norman Guinasso wrote: > > library (rNOMADS) > Loading required package: rvest > Loading required package: xml2 > > **** > Welcome to rNOMADS! > Questions? Follow @rNOMADS_r on Twitter or send a message to > rnomads-user at lists.r-forge.r-project.org > Using rNOMADS as a data source for a publication? Please cite it! > I'm an early career researcher and every citation matters. > **** > > > sessionInfo() > R version 3.5.2 (2018-12-20) > Platform: x86_64-pc-linux-gnu (64-bit) > Running under: Ubuntu 18.04.1 LTS > > Matrix products: default > BLAS: /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.7.1 > LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.7.1 > > locale: > [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C > LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8 > [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8 > LC_PAPER=en_US.UTF-8 LC_NAME=C > [9] LC_ADDRESS=C LC_TELEPHONE=C > LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C > > attached base packages: > [1] stats graphics grDevices utils datasets methods base > > other attached packages: > [1] rNOMADS_2.4.0 rvest_0.3.2 xml2_1.2.0 > > loaded via a namespace (and not attached): > [1] httr_1.3.1 compiler_3.5.2 R6_2.2.2 > magrittr_1.5 tools_3.5.2 bizdays_1.0.6 yaml_2.2.0 > [8] Rcpp_0.12.18 lubridate_1.7.4 stringi_1.2.4 > timeDate_3043.102 stringr_1.3.1 jsonlite_1.5 > > GetDODSDates("nam") > Error in GetDODSDates("nam") : > The specified URL does not exist! Make sure your model information is > correct. It is also possible the NOMADS server is down. > Details: Attempted to access https://nomads.ncep.noaa.gov:9090/dods/nam/ > but did not succeed... > > traceback() > 2: stop(paste0("The specified URL does not exist! Make sure your model > information is correct. It is also possible the NOMADS server is down.\n", > "Details: Attempted to access ", top.url, " but did not > succeed...")) > 1: GetDODSDates("nam") > > I note that if I paste the url into the browser with http and the :9090 > removed it works. > > Norman Guinasso > > > On Friday, December 28, 2018, 11:51:21 PM CST, Daniel Bowman < > danny.c.bowman at gmail.com> wrote: > > > All, > > Attached is an rNOMADS source that should keep DODS working for now. > I expect things to fail again when NCEP switches to https (DODS is > still http for some reason). I will be fixing the html parsers to > hopefully avoid this from happening. Until then, please use this > release for your grib and DODS needs. > > At present both my grib and dods vignettes (downloading GFS data and > doing some basic manipulation) are running fine with this version. > > Let me know if anything is still not working for you. > > Best, > > Danny > _______________________________________________ > Rnomads-user mailing list > Rnomads-user at lists.r-forge.r-project.org > http://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/rnomads-user > _______________________________________________ > Rnomads-user mailing list > Rnomads-user at lists.r-forge.r-project.org > http://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/rnomads-user > -------------- next part -------------- An HTML attachment was scrubbed... URL: From danny.c.bowman at gmail.com Wed Feb 6 04:01:49 2019 From: danny.c.bowman at gmail.com (Daniel Bowman) Date: Tue, 5 Feb 2019 20:01:49 -0700 Subject: [Rnomads-user] DODS working (for now) In-Reply-To: References: <464791232.3867443.1546097983243@mail.yahoo.com> Message-ID: Thanks, im keeping an eye on it. I won?t be able to fix it for a few days but if the issue persists I will handle it. The grib interface is also down so there may be a site wide issue. On Tue, Feb 5, 2019 at 12:18 Alexey Galda wrote: > Hi there, > > Something stopped working again. GetDODSDates() returns: > > Error in seq.default(max(i), length(lines)) : >> 'from' must be a finite number >> In addition: Warning messages: >> 1: In max(i) : no non-missing arguments to max; returning -Inf >> 2: In max(i) : no non-missing arguments to max; returning -Inf > > > Cheers, > Alexey > > On Sat, 29 Dec 2018 at 09:39, Norman Guinasso wrote: > >> > library (rNOMADS) >> Loading required package: rvest >> Loading required package: xml2 >> >> **** >> Welcome to rNOMADS! >> Questions? Follow @rNOMADS_r on Twitter or send a message to >> rnomads-user at lists.r-forge.r-project.org >> Using rNOMADS as a data source for a publication? Please cite it! >> I'm an early career researcher and every citation matters. >> **** >> >> > sessionInfo() >> R version 3.5.2 (2018-12-20) >> Platform: x86_64-pc-linux-gnu (64-bit) >> Running under: Ubuntu 18.04.1 LTS >> >> Matrix products: default >> BLAS: /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.7.1 >> LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.7.1 >> >> locale: >> [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C >> LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8 >> [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8 >> LC_PAPER=en_US.UTF-8 LC_NAME=C >> [9] LC_ADDRESS=C LC_TELEPHONE=C >> LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C >> >> attached base packages: >> [1] stats graphics grDevices utils datasets methods base >> >> other attached packages: >> [1] rNOMADS_2.4.0 rvest_0.3.2 xml2_1.2.0 >> >> loaded via a namespace (and not attached): >> [1] httr_1.3.1 compiler_3.5.2 R6_2.2.2 >> magrittr_1.5 tools_3.5.2 bizdays_1.0.6 yaml_2.2.0 >> [8] Rcpp_0.12.18 lubridate_1.7.4 stringi_1.2.4 >> timeDate_3043.102 stringr_1.3.1 jsonlite_1.5 >> > GetDODSDates("nam") >> Error in GetDODSDates("nam") : >> The specified URL does not exist! Make sure your model information is >> correct. It is also possible the NOMADS server is down. >> Details: Attempted to access https://nomads.ncep.noaa.gov:9090/dods/nam/ >> but did not succeed... >> > traceback() >> 2: stop(paste0("The specified URL does not exist! Make sure your model >> information is correct. It is also possible the NOMADS server is down.\n", >> "Details: Attempted to access ", top.url, " but did not >> succeed...")) >> 1: GetDODSDates("nam") >> >> I note that if I paste the url into the browser with http and the :9090 >> removed it works. >> >> Norman Guinasso >> >> >> On Friday, December 28, 2018, 11:51:21 PM CST, Daniel Bowman < >> danny.c.bowman at gmail.com> wrote: >> >> >> All, >> >> Attached is an rNOMADS source that should keep DODS working for now. >> I expect things to fail again when NCEP switches to https (DODS is >> still http for some reason). I will be fixing the html parsers to >> hopefully avoid this from happening. Until then, please use this >> release for your grib and DODS needs. >> >> At present both my grib and dods vignettes (downloading GFS data and >> doing some basic manipulation) are running fine with this version. >> >> Let me know if anything is still not working for you. >> >> Best, >> >> Danny >> > _______________________________________________ >> Rnomads-user mailing list >> Rnomads-user at lists.r-forge.r-project.org >> http://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/rnomads-user >> _______________________________________________ >> Rnomads-user mailing list >> Rnomads-user at lists.r-forge.r-project.org >> http://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/rnomads-user >> > _______________________________________________ > Rnomads-user mailing list > Rnomads-user at lists.r-forge.r-project.org > http://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/rnomads-user > -------------- next part -------------- An HTML attachment was scrubbed... URL: From akssimkowski at sbcglobal.net Wed Feb 6 13:18:46 2019 From: akssimkowski at sbcglobal.net (Adam Simkowski) Date: Wed, 6 Feb 2019 12:18:46 +0000 (UTC) Subject: [Rnomads-user] Rnomads-user Digest, Vol 33, Issue 1 In-Reply-To: References: Message-ID: <1375149564.3875413.1549455526356@mail.yahoo.com> I am also having the same issue as Alexey and spoke to another user who uses dods having the same issue.? Adam Simkowski? On Tuesday, February 5, 2019, 10:02:41 PM EST, wrote: Send Rnomads-user mailing list submissions to ??? rnomads-user at lists.r-forge.r-project.org To subscribe or unsubscribe via the World Wide Web, visit ??? http://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/rnomads-user or, via email, send a message with subject or body 'help' to ??? rnomads-user-request at lists.r-forge.r-project.org You can reach the person managing the list at ??? rnomads-user-owner at lists.r-forge.r-project.org When replying, please edit your Subject line so it is more specific than "Re: Contents of Rnomads-user digest..." Today's Topics: ? 1. Re: DODS working (for now) (Alexey Galda) ? 2. Re: DODS working (for now) (Daniel Bowman) ---------------------------------------------------------------------- Message: 1 Date: Tue, 5 Feb 2019 13:17:39 -0600 From: Alexey Galda To: "Announcements, feature requests, and help using rNOMADS" ??? Subject: Re: [Rnomads-user] DODS working (for now) Message-ID: ??? Content-Type: text/plain; charset="utf-8" Hi there, Something stopped working again. GetDODSDates() returns: Error in seq.default(max(i), length(lines)) : >? 'from' must be a finite number > In addition: Warning messages: > 1: In max(i) : no non-missing arguments to max; returning -Inf > 2: In max(i) : no non-missing arguments to max; returning -Inf Cheers, Alexey On Sat, 29 Dec 2018 at 09:39, Norman Guinasso wrote: > > library (rNOMADS) > Loading required package: rvest > Loading required package: xml2 > > **** > Welcome to rNOMADS! > Questions? Follow @rNOMADS_r on Twitter or send a message to > rnomads-user at lists.r-forge.r-project.org > Using rNOMADS as a data source for a publication?? Please cite it! > I'm an early career researcher and every citation matters. > **** > > > sessionInfo() > R version 3.5.2 (2018-12-20) > Platform: x86_64-pc-linux-gnu (64-bit) > Running under: Ubuntu 18.04.1 LTS > > Matrix products: default > BLAS: /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.7.1 > LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.7.1 > > locale: >? [1] LC_CTYPE=en_US.UTF-8? ? ? LC_NUMERIC=C > LC_TIME=en_US.UTF-8? ? ? ? LC_COLLATE=en_US.UTF-8 >? [5] LC_MONETARY=en_US.UTF-8? ? LC_MESSAGES=en_US.UTF-8 > LC_PAPER=en_US.UTF-8? ? ? LC_NAME=C >? [9] LC_ADDRESS=C? ? ? ? ? ? ? LC_TELEPHONE=C > LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C > > attached base packages: > [1] stats? ? graphics? grDevices utils? ? datasets? methods? base > > other attached packages: > [1] rNOMADS_2.4.0 rvest_0.3.2? xml2_1.2.0 > > loaded via a namespace (and not attached): >? [1] httr_1.3.1? ? ? ? compiler_3.5.2? ? R6_2.2.2 > magrittr_1.5? ? ? tools_3.5.2? ? ? bizdays_1.0.6? ? yaml_2.2.0 >? [8] Rcpp_0.12.18? ? ? lubridate_1.7.4? stringi_1.2.4 > timeDate_3043.102 stringr_1.3.1? ? jsonlite_1.5 > > GetDODSDates("nam") > Error in GetDODSDates("nam") : >? The specified URL does not exist!? Make sure your model information is > correct.? It is also possible the NOMADS server is down. > Details:? Attempted to access https://nomads.ncep.noaa.gov:9090/dods/nam/ > but did not succeed... > > traceback() > 2: stop(paste0("The specified URL does not exist!? Make sure your model > information is correct.? It is also possible the NOMADS server is down.\n", >? ? ? ? "Details:? Attempted to access ", top.url, " but did not > succeed...")) > 1: GetDODSDates("nam") > > I note that if I paste the url into the browser with http and the :9090 > removed it works. > > Norman Guinasso > > > On Friday, December 28, 2018, 11:51:21 PM CST, Daniel Bowman < > danny.c.bowman at gmail.com> wrote: > > > All, > > Attached is an rNOMADS source that should keep DODS working for now. > I expect things to fail again when NCEP switches to https (DODS is > still http for some reason).? I will be fixing the html parsers to > hopefully avoid this from happening.? Until then, please use this > release for your grib and DODS needs. > > At present both my grib and dods vignettes (downloading GFS data and > doing some basic manipulation) are running fine with this version. > > Let me know if anything is still not working for you. > > Best, > > Danny > _______________________________________________ > Rnomads-user mailing list > Rnomads-user at lists.r-forge.r-project.org > http://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/rnomads-user > _______________________________________________ > Rnomads-user mailing list > Rnomads-user at lists.r-forge.r-project.org > http://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/rnomads-user > -------------- next part -------------- An HTML attachment was scrubbed... URL: ------------------------------ Message: 2 Date: Tue, 5 Feb 2019 20:01:49 -0700 From: Daniel Bowman To: "Announcements, feature requests, and help using rNOMADS" ??? Subject: Re: [Rnomads-user] DODS working (for now) Message-ID: ??? Content-Type: text/plain; charset="utf-8" Thanks,? im keeping an eye on it. I won?t be able to fix it for a few days but if the issue persists I will handle it. The grib interface is also down so there may be a site wide issue. On Tue, Feb 5, 2019 at 12:18 Alexey Galda wrote: > Hi there, > > Something stopped working again. GetDODSDates() returns: > > Error in seq.default(max(i), length(lines)) : >>? 'from' must be a finite number >> In addition: Warning messages: >> 1: In max(i) : no non-missing arguments to max; returning -Inf >> 2: In max(i) : no non-missing arguments to max; returning -Inf > > > Cheers, > Alexey > > On Sat, 29 Dec 2018 at 09:39, Norman Guinasso wrote: > >> > library (rNOMADS) >> Loading required package: rvest >> Loading required package: xml2 >> >> **** >> Welcome to rNOMADS! >> Questions? Follow @rNOMADS_r on Twitter or send a message to >> rnomads-user at lists.r-forge.r-project.org >> Using rNOMADS as a data source for a publication?? Please cite it! >> I'm an early career researcher and every citation matters. >> **** >> >> > sessionInfo() >> R version 3.5.2 (2018-12-20) >> Platform: x86_64-pc-linux-gnu (64-bit) >> Running under: Ubuntu 18.04.1 LTS >> >> Matrix products: default >> BLAS: /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.7.1 >> LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.7.1 >> >> locale: >>? [1] LC_CTYPE=en_US.UTF-8? ? ? LC_NUMERIC=C >> LC_TIME=en_US.UTF-8? ? ? ? LC_COLLATE=en_US.UTF-8 >>? [5] LC_MONETARY=en_US.UTF-8? ? LC_MESSAGES=en_US.UTF-8 >> LC_PAPER=en_US.UTF-8? ? ? LC_NAME=C >>? [9] LC_ADDRESS=C? ? ? ? ? ? ? LC_TELEPHONE=C >> LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C >> >> attached base packages: >> [1] stats? ? graphics? grDevices utils? ? datasets? methods? base >> >> other attached packages: >> [1] rNOMADS_2.4.0 rvest_0.3.2? xml2_1.2.0 >> >> loaded via a namespace (and not attached): >>? [1] httr_1.3.1? ? ? ? compiler_3.5.2? ? R6_2.2.2 >> magrittr_1.5? ? ? tools_3.5.2? ? ? bizdays_1.0.6? ? yaml_2.2.0 >>? [8] Rcpp_0.12.18? ? ? lubridate_1.7.4? stringi_1.2.4 >> timeDate_3043.102 stringr_1.3.1? ? jsonlite_1.5 >> > GetDODSDates("nam") >> Error in GetDODSDates("nam") : >>? The specified URL does not exist!? Make sure your model information is >> correct.? It is also possible the NOMADS server is down. >> Details:? Attempted to access https://nomads.ncep.noaa.gov:9090/dods/nam/ >> but did not succeed... >> > traceback() >> 2: stop(paste0("The specified URL does not exist!? Make sure your model >> information is correct.? It is also possible the NOMADS server is down.\n", >>? ? ? ? "Details:? Attempted to access ", top.url, " but did not >> succeed...")) >> 1: GetDODSDates("nam") >> >> I note that if I paste the url into the browser with http and the :9090 >> removed it works. >> >> Norman Guinasso >> >> >> On Friday, December 28, 2018, 11:51:21 PM CST, Daniel Bowman < >> danny.c.bowman at gmail.com> wrote: >> >> >> All, >> >> Attached is an rNOMADS source that should keep DODS working for now. >> I expect things to fail again when NCEP switches to https (DODS is >> still http for some reason).? I will be fixing the html parsers to >> hopefully avoid this from happening.? Until then, please use this >> release for your grib and DODS needs. >> >> At present both my grib and dods vignettes (downloading GFS data and >> doing some basic manipulation) are running fine with this version. >> >> Let me know if anything is still not working for you. >> >> Best, >> >> Danny >> > _______________________________________________ >> Rnomads-user mailing list >> Rnomads-user at lists.r-forge.r-project.org >> http://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/rnomads-user >> _______________________________________________ >> Rnomads-user mailing list >> Rnomads-user at lists.r-forge.r-project.org >> http://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/rnomads-user >> > _______________________________________________ > Rnomads-user mailing list > Rnomads-user at lists.r-forge.r-project.org > http://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/rnomads-user > -------------- next part -------------- An HTML attachment was scrubbed... URL: ------------------------------ Subject: Digest Footer _______________________________________________ Rnomads-user mailing list Rnomads-user at lists.r-forge.r-project.org http://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/rnomads-user ------------------------------ End of Rnomads-user Digest, Vol 33, Issue 1 ******************************************* -------------- next part -------------- An HTML attachment was scrubbed... URL: From danny.c.bowman at gmail.com Wed Feb 6 15:15:57 2019 From: danny.c.bowman at gmail.com (Daniel Bowman) Date: Wed, 6 Feb 2019 07:15:57 -0700 Subject: [Rnomads-user] rNOMADS currently down Message-ID: Hi all, Both the grib and dods interfaces are down. I am not sure what is going on at present but it seems to be an rNOMADS issue, not a website issue, since I am able to manually download data. It is going to be difficult for me to fix in the next several days but I hope to solve it by this weekend. Please bear with me. Best, Danny -------------- next part -------------- An HTML attachment was scrubbed... URL: From danny.c.bowman at gmail.com Thu Feb 7 03:14:06 2019 From: danny.c.bowman at gmail.com (Daniel Bowman) Date: Wed, 6 Feb 2019 19:14:06 -0700 Subject: [Rnomads-user] Grib is back online Message-ID: The grib interface is back up as of 3 hours ago. Let?s hope DODS follows suit. If it does I?ll let everyone know. -------------- next part -------------- An HTML attachment was scrubbed... URL: From danny.c.bowman at gmail.com Thu Feb 7 17:01:56 2019 From: danny.c.bowman at gmail.com (Daniel Bowman) Date: Thu, 7 Feb 2019 09:01:56 -0700 Subject: [Rnomads-user] DODS fix Message-ID: All, Please add the argument https=TRUE in GetDODSDates. Everything should work after that. Best, Danny -------------- next part -------------- An HTML attachment was scrubbed... URL: