[Rinside-commits] r247 - in pkg: . inst inst/examples/armadillo inst/examples/armadillo/cmake inst/examples/eigen inst/examples/eigen/cmake
noreply at r-forge.r-project.org
noreply at r-forge.r-project.org
Tue Aug 14 02:08:46 CEST 2012
Author: edd
Date: 2012-08-14 02:08:46 +0200 (Tue, 14 Aug 2012)
New Revision: 247
Added:
pkg/inst/examples/armadillo/cmake/
pkg/inst/examples/armadillo/cmake/CMakeLists.txt
pkg/inst/examples/eigen/cmake/
pkg/inst/examples/eigen/cmake/CMakeLists.txt
Modified:
pkg/ChangeLog
pkg/inst/NEWS.Rd
Log:
added patch by Peter with CMake support for new armadillo and eigen examples
Modified: pkg/ChangeLog
===================================================================
--- pkg/ChangeLog 2012-08-13 11:43:54 UTC (rev 246)
+++ pkg/ChangeLog 2012-08-14 00:08:46 UTC (rev 247)
@@ -1,3 +1,8 @@
+2012-08-13 Dirk Eddelbuettel <edd at debian.org>
+
+ * inst/examples/eigen/cmake/CMakeLists.txt: Added Peter's patch
+ * inst/examples/armadillo/cmake/CMakeLists.txt: idem
+
2012-08-12 Dirk Eddelbuettel <edd at debian.org>
* DESCRIPTION: Release 0.2.7
Modified: pkg/inst/NEWS.Rd
===================================================================
--- pkg/inst/NEWS.Rd 2012-08-13 11:43:54 UTC (rev 246)
+++ pkg/inst/NEWS.Rd 2012-08-14 00:08:46 UTC (rev 247)
@@ -2,6 +2,12 @@
\title{News for Package 'RInside'}
\newcommand{\cpkg}{\href{http://CRAN.R-project.org/package=#1}{\pkg{#1}}}
+\section{Changes in RInside version 0.2.8 (2012-xx-yy)}{
+ \itemize{
+ \item Added CMake build support for armadillo and eigen examples,
+ once again kindly contributed by Peter Aberline
+ }
+}
\section{Changes in RInside version 0.2.7 (2012-08-12)}{
\itemize{
\item New fifth examples subdirectory 'armadillo' with two new
Added: pkg/inst/examples/armadillo/cmake/CMakeLists.txt
===================================================================
--- pkg/inst/examples/armadillo/cmake/CMakeLists.txt (rev 0)
+++ pkg/inst/examples/armadillo/cmake/CMakeLists.txt 2012-08-14 00:08:46 UTC (rev 247)
@@ -0,0 +1,152 @@
+cmake_minimum_required(VERSION 2.8.4)
+
+set (VERBOSE 1)
+set (SRC_DIR ${CMAKE_CURRENT_SOURCE_DIR}/..)
+
+execute_process(COMMAND R RHOME
+ OUTPUT_VARIABLE R_HOME)
+
+file(GLOB sources ${SRC_DIR}/*.cpp)
+
+set(NUM_TRUNC_CHARS 2)
+
+execute_process(COMMAND R CMD config --cppflags
+ OUTPUT_VARIABLE RCPPFLAGS)
+
+if (CMAKE_HOST_WIN32)
+ if (${RCPPFLAGS} MATCHES "[-][I]([^ ;])+")
+ set (RCPPFLAGS ${CMAKE_MATCH_0})
+ endif()
+endif()
+
+string(SUBSTRING ${RCPPFLAGS} ${NUM_TRUNC_CHARS} -1 RCPPFLAGS)
+include_directories(${RCPPFLAGS})
+
+execute_process(COMMAND R CMD config --ldflags
+ OUTPUT_VARIABLE RLDFLAGS)
+string(LENGTH ${RLDFLAGS} RLDFLAGS_LEN)
+
+if (${RLDFLAGS} MATCHES "[-][L]([^ ;])+")
+ string(SUBSTRING ${CMAKE_MATCH_0} ${NUM_TRUNC_CHARS} -1 RLDFLAGS_L)
+ string(STRIP ${RLDFLAGS_L} RLDFLAGS_L )
+ link_directories(${RLDFLAGS_L} )
+endif()
+
+if (${RLDFLAGS} MATCHES "[-][l]([^;])+")
+ string(SUBSTRING ${CMAKE_MATCH_0} ${NUM_TRUNC_CHARS} -1 RLDFLAGS_l)
+ string(STRIP ${RLDFLAGS_l} RLDFLAGS_l )
+endif()
+
+execute_process(COMMAND Rscript -e "Rcpp:::CxxFlags()"
+ OUTPUT_VARIABLE RCPPINCL)
+string(SUBSTRING ${RCPPINCL} ${NUM_TRUNC_CHARS} -1 RCPPINCL)
+include_directories(${RCPPINCL})
+
+execute_process(COMMAND Rscript -e "Rcpp:::LdFlags()"
+ OUTPUT_VARIABLE RCPPLIBS)
+
+execute_process(COMMAND Rscript -e "RInside:::CxxFlags()"
+ OUTPUT_VARIABLE RINSIDEINCL)
+string(SUBSTRING ${RINSIDEINCL} ${NUM_TRUNC_CHARS} -1 RINSIDEINCL)
+include_directories(${RINSIDEINCL})
+message(${RINSIDEINCL})
+
+execute_process(COMMAND Rscript -e "RInside:::LdFlags()"
+ OUTPUT_VARIABLE RINSIDELIBS)
+
+execute_process(COMMAND Rscript -e "RcppArmadillo:::CxxFlags()"
+ OUTPUT_VARIABLE RCPPARMADILLOINCL)
+
+string(LENGTH ${RCPPARMADILLOINCL} INCLLENGTH)
+math(EXPR INCLLENGTH "${INCLLENGTH}-4")
+
+string(SUBSTRING ${RCPPARMADILLOINCL} 3 ${INCLLENGTH} RCPPARMADILLOINCL)
+include_directories(${RCPPARMADILLOINCL})
+
+if (CMAKE_HOST_WIN32)
+ string(LENGTH "libRcpp.a" lenRcppName)
+ string(LENGTH ${RCPPLIBS} lenRcppFQName)
+
+ math(EXPR RLibPathLen ${lenRcppFQName}-${lenRcppName}-1)
+ string(SUBSTRING ${RCPPLIBS} 0 ${RLibPathLen} RCPPLIBS_L)
+ link_directories(${RCPPLIBS_L})
+
+ math(EXPR RLibPathLen ${RLibPathLen}+1)
+ string(SUBSTRING ${RCPPLIBS} ${RLibPathLen} -1 RCPPLIBS_l)
+
+ #Remove the quotes
+ string(SUBSTRING ${RINSIDELIBS} 1 -1 RINSIDELIBS)
+ string(LENGTH ${RINSIDELIBS} lenRInsideFQNameLen)
+ math(EXPR lenRInsideFQNameLen ${lenRInsideFQNameLen}-1)
+ string(SUBSTRING ${RINSIDELIBS} 0 ${lenRInsideFQNameLen} RINSIDELIBS)
+
+ string(LENGTH "libRInside.a" lenRInsideName)
+ string(LENGTH ${RINSIDELIBS} lenRInsideFQName)
+
+ math(EXPR RLibPathLen ${lenRInsideFQName}-${lenRInsideName}-1)
+ string(SUBSTRING ${RINSIDELIBS} 0 ${RLibPathLen} RINSIDELIBS_L)
+
+ math(EXPR RLibPathLen ${RLibPathLen}+1)
+ string(SUBSTRING ${RINSIDELIBS} ${RLibPathLen} -1 RINSIDELIBS_l)
+
+ link_directories(${RINSIDELIBS_L})
+else()
+ if (${RCPPLIBS} MATCHES "[-][L]([^ ;])+")
+ string(SUBSTRING ${CMAKE_MATCH_0} ${NUM_TRUNC_CHARS} -1 RCPPLIBS_L)
+ link_directories(${RCPPLIBS_L} )
+ endif()
+
+ if (${RCPPLIBS} MATCHES "[-][l][R]([^;])+")
+ string(SUBSTRING ${CMAKE_MATCH_0} ${NUM_TRUNC_CHARS} -1 RCPPLIBS_l)
+ endif()
+
+ if (${RINSIDELIBS} MATCHES "[-][L]([^ ;])+")
+ string(SUBSTRING ${CMAKE_MATCH_0} ${NUM_TRUNC_CHARS} -1 RINSIDELIBS_L)
+ link_directories(${RINSIDELIBS_L})
+ endif()
+
+ if (${RINSIDELIBS} MATCHES "[-][l][R]([^;])+")
+ string(SUBSTRING ${CMAKE_MATCH_0} ${NUM_TRUNC_CHARS} -1 RINSIDELIBS_l)
+ endif()
+
+ # If the faster 'gold' linker is used, to avoid complaints about undefined symbol
+ SET(CMAKE_FIND_LIBRARY_SUFFIXES_SAVED ${CMAKE_FIND_LIBRARY_SUFFIXES}) # Backup
+ LIST(APPEND CMAKE_FIND_LIBRARY_SUFFIXES ".so.3")
+ FIND_LIBRARY(BLAS_LIBRARY blas)
+ SET(CMAKE_FIND_LIBRARY_SUFFIXES ${CMAKE_FIND_LIBRARY_SUFFIXES_SAVED}) # Restore
+ LIST(APPEND EXTRA_LIBRARIES ${BLAS_LIBRARY})
+endif()
+
+execute_process(COMMAND R CMD config CXXFLAGS
+ OUTPUT_VARIABLE RCXXFLAGS)
+
+execute_process(COMMAND R CMD config BLAS_LIBS
+ OUTPUT_VARIABLE RBLAS)
+
+execute_process(COMMAND R CMD config LAPACK_LIBS
+ OUTPUT_VARIABLE RLAPACK)
+
+
+FIND_LIBRARY(LAPACK_LIBRARY lapack)
+
+set(CMAKE_CXX_FLAGS "-W -Wall -pedantic -Wextra ${CMAKE_CXX_FLAGS}")
+
+if (CMAKE_BUILD_TYPE STREQUAL "DEBUG" OR
+ CMAKE_BUILD_TYPE STREQUAL "RelWithDebugInfo" )
+ add_definitions("-DDEBUG")
+elseif ( CMAKE_BUILD_TYPE STREQUAL "RELEASE" )
+ add_definitions("-O3")
+endif()
+
+foreach (next_SOURCE ${sources})
+ get_filename_component(source_name ${next_SOURCE} NAME_WE)
+ add_executable( ${source_name} ${next_SOURCE} )
+
+ target_link_libraries(${source_name} ${RLDFLAGS_l})
+ target_link_libraries(${source_name} ${BLAS_LIBS})
+ target_link_libraries(${source_name} ${LAPACK_LIBS})
+ target_link_libraries(${source_name} ${RINSIDELIBS_l})
+ target_link_libraries(${source_name} ${RCPPLIBS_l})
+ target_link_libraries(${source_name} ${EXTRA_LIBRARIES})
+ target_link_libraries(${source_name} ${LAPACK_LIBRARY})
+endforeach (next_SOURCE ${sources})
Added: pkg/inst/examples/eigen/cmake/CMakeLists.txt
===================================================================
--- pkg/inst/examples/eigen/cmake/CMakeLists.txt (rev 0)
+++ pkg/inst/examples/eigen/cmake/CMakeLists.txt 2012-08-14 00:08:46 UTC (rev 247)
@@ -0,0 +1,147 @@
+cmake_minimum_required(VERSION 2.8.4)
+
+set (VERBOSE 1)
+set (SRC_DIR ${CMAKE_CURRENT_SOURCE_DIR}/..)
+
+execute_process(COMMAND R RHOME
+ OUTPUT_VARIABLE R_HOME)
+
+file(GLOB sources ${SRC_DIR}/*.cpp)
+
+set(NUM_TRUNC_CHARS 2)
+
+execute_process(COMMAND R CMD config --cppflags
+ OUTPUT_VARIABLE RCPPFLAGS)
+
+if (CMAKE_HOST_WIN32)
+ if (${RCPPFLAGS} MATCHES "[-][I]([^ ;])+")
+ set (RCPPFLAGS ${CMAKE_MATCH_0})
+ endif()
+endif()
+
+string(SUBSTRING ${RCPPFLAGS} ${NUM_TRUNC_CHARS} -1 RCPPFLAGS)
+include_directories(${RCPPFLAGS})
+
+execute_process(COMMAND R CMD config --ldflags
+ OUTPUT_VARIABLE RLDFLAGS)
+string(LENGTH ${RLDFLAGS} RLDFLAGS_LEN)
+
+if (${RLDFLAGS} MATCHES "[-][L]([^ ;])+")
+ string(SUBSTRING ${CMAKE_MATCH_0} ${NUM_TRUNC_CHARS} -1 RLDFLAGS_L)
+ string(STRIP ${RLDFLAGS_L} RLDFLAGS_L )
+ link_directories(${RLDFLAGS_L} )
+endif()
+
+if (${RLDFLAGS} MATCHES "[-][l]([^;])+")
+ string(SUBSTRING ${CMAKE_MATCH_0} ${NUM_TRUNC_CHARS} -1 RLDFLAGS_l)
+ string(STRIP ${RLDFLAGS_l} RLDFLAGS_l )
+endif()
+
+execute_process(COMMAND Rscript -e "Rcpp:::CxxFlags()"
+ OUTPUT_VARIABLE RCPPINCL)
+string(SUBSTRING ${RCPPINCL} ${NUM_TRUNC_CHARS} -1 RCPPINCL)
+include_directories(${RCPPINCL})
+
+execute_process(COMMAND Rscript -e "Rcpp:::LdFlags()"
+ OUTPUT_VARIABLE RCPPLIBS)
+
+execute_process(COMMAND Rscript -e "RInside:::CxxFlags()"
+ OUTPUT_VARIABLE RINSIDEINCL)
+string(SUBSTRING ${RINSIDEINCL} ${NUM_TRUNC_CHARS} -1 RINSIDEINCL)
+include_directories(${RINSIDEINCL})
+
+execute_process(COMMAND Rscript -e "RInside:::LdFlags()"
+ OUTPUT_VARIABLE RINSIDELIBS)
+
+execute_process(COMMAND Rscript -e "cat(paste('-I', system.file('include', package = 'RcppEigen'), sep=''))" OUTPUT_VARIABLE RCPPEIGENINCL)
+
+string(SUBSTRING ${RCPPEIGENINCL} ${NUM_TRUNC_CHARS} -1 RCPPEIGENINCL)
+include_directories(${RCPPEIGENINCL})
+
+if (CMAKE_HOST_WIN32)
+ string(LENGTH "libRcpp.a" lenRcppName)
+ string(LENGTH ${RCPPLIBS} lenRcppFQName)
+
+ math(EXPR RLibPathLen ${lenRcppFQName}-${lenRcppName}-1)
+ string(SUBSTRING ${RCPPLIBS} 0 ${RLibPathLen} RCPPLIBS_L)
+ link_directories(${RCPPLIBS_L})
+
+ math(EXPR RLibPathLen ${RLibPathLen}+1)
+ string(SUBSTRING ${RCPPLIBS} ${RLibPathLen} -1 RCPPLIBS_l)
+
+ #Remove the quotes
+ string(SUBSTRING ${RINSIDELIBS} 1 -1 RINSIDELIBS)
+ string(LENGTH ${RINSIDELIBS} lenRInsideFQNameLen)
+ math(EXPR lenRInsideFQNameLen ${lenRInsideFQNameLen}-1)
+ string(SUBSTRING ${RINSIDELIBS} 0 ${lenRInsideFQNameLen} RINSIDELIBS)
+
+ string(LENGTH "libRInside.a" lenRInsideName)
+ string(LENGTH ${RINSIDELIBS} lenRInsideFQName)
+
+ math(EXPR RLibPathLen ${lenRInsideFQName}-${lenRInsideName}-1)
+ string(SUBSTRING ${RINSIDELIBS} 0 ${RLibPathLen} RINSIDELIBS_L)
+
+ math(EXPR RLibPathLen ${RLibPathLen}+1)
+ string(SUBSTRING ${RINSIDELIBS} ${RLibPathLen} -1 RINSIDELIBS_l)
+
+ link_directories(${RINSIDELIBS_L})
+else()
+ if (${RCPPLIBS} MATCHES "[-][L]([^ ;])+")
+ string(SUBSTRING ${CMAKE_MATCH_0} ${NUM_TRUNC_CHARS} -1 RCPPLIBS_L)
+ link_directories(${RCPPLIBS_L} )
+ endif()
+
+ if (${RCPPLIBS} MATCHES "[-][l][R]([^;])+")
+ string(SUBSTRING ${CMAKE_MATCH_0} ${NUM_TRUNC_CHARS} -1 RCPPLIBS_l)
+ endif()
+
+ if (${RINSIDELIBS} MATCHES "[-][L]([^ ;])+")
+ string(SUBSTRING ${CMAKE_MATCH_0} ${NUM_TRUNC_CHARS} -1 RINSIDELIBS_L)
+ link_directories(${RINSIDELIBS_L})
+ endif()
+
+ if (${RINSIDELIBS} MATCHES "[-][l][R]([^;])+")
+ string(SUBSTRING ${CMAKE_MATCH_0} ${NUM_TRUNC_CHARS} -1 RINSIDELIBS_l)
+ endif()
+
+ # If the faster 'gold' linker is used, to avoid complaints about undefined symbol
+ SET(CMAKE_FIND_LIBRARY_SUFFIXES_SAVED ${CMAKE_FIND_LIBRARY_SUFFIXES}) # Backup
+ LIST(APPEND CMAKE_FIND_LIBRARY_SUFFIXES ".so.3")
+ FIND_LIBRARY(BLAS_LIBRARY blas)
+ SET(CMAKE_FIND_LIBRARY_SUFFIXES ${CMAKE_FIND_LIBRARY_SUFFIXES_SAVED}) # Restore
+ LIST(APPEND EXTRA_LIBRARIES ${BLAS_LIBRARY})
+endif()
+
+execute_process(COMMAND R CMD config CXXFLAGS
+ OUTPUT_VARIABLE RCXXFLAGS)
+
+execute_process(COMMAND R CMD config BLAS_LIBS
+ OUTPUT_VARIABLE RBLAS)
+
+execute_process(COMMAND R CMD config LAPACK_LIBS
+ OUTPUT_VARIABLE RLAPACK)
+
+
+FIND_LIBRARY(LAPACK_LIBRARY lapack)
+
+set(CMAKE_CXX_FLAGS "-W -Wall -pedantic -Wextra ${CMAKE_CXX_FLAGS}")
+
+if (CMAKE_BUILD_TYPE STREQUAL "DEBUG" OR
+ CMAKE_BUILD_TYPE STREQUAL "RelWithDebugInfo" )
+ add_definitions("-DDEBUG")
+elseif ( CMAKE_BUILD_TYPE STREQUAL "RELEASE" )
+ add_definitions("-O3")
+endif()
+
+foreach (next_SOURCE ${sources})
+ get_filename_component(source_name ${next_SOURCE} NAME_WE)
+ add_executable( ${source_name} ${next_SOURCE} )
+
+ target_link_libraries(${source_name} ${RLDFLAGS_l})
+ target_link_libraries(${source_name} ${BLAS_LIBS})
+ target_link_libraries(${source_name} ${LAPACK_LIBS})
+ target_link_libraries(${source_name} ${RINSIDELIBS_l})
+ target_link_libraries(${source_name} ${RCPPLIBS_l})
+ target_link_libraries(${source_name} ${EXTRA_LIBRARIES})
+ target_link_libraries(${source_name} ${LAPACK_LIBRARY})
+endforeach (next_SOURCE ${sources})
More information about the Rinside-commits
mailing list