[Repitools-help] cannot install RepitoolsExamples package

[Yanchun Bao]

Dear all,

I have installed Repitools following the instruction of Repitools manual with all required packages installed. However, I cannot install RepitoolsExamples package, my session info is

> sessionInfo()
R version 2.13.0 (2011-04-13)
Platform: x86_64-pc-mingw32/x64 (64-bit)
locale:
[1] LC_COLLATE=English_United Kingdom.1252
[2] LC_CTYPE=English_United Kingdom.1252
[3] LC_MONETARY=English_United Kingdom.1252
[4] LC_NUMERIC=C
[5] LC_TIME=English_United Kingdom.1252
attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base
other attached packages:
 [1] Repitools_1.81                     chipseq_1.2.0
 [3] ShortRead_1.10.4                   Rsamtools_1.4.2
 [5] lattice_0.19-23                    BSgenome.Hsapiens.UCSC.hg18_1.3.17
 [7] BSgenome_1.20.0                    Biostrings_2.20.1
 [9] GenomicRanges_1.4.6                limma_3.8.2
[11] edgeR_2.2.5                        aroma.affymetrix_2.1.0
[13] aroma.apd_0.1.8                    affxparser_1.24.0
[15] R.huge_0.2.2                       aroma.core_2.1.0
[17] aroma.light_1.20.0                 matrixStats_0.2.2
[19] R.rsp_0.5.3                        R.cache_0.4.2
[21] R.filesets_1.0.1                   digest_0.5.0
[23] R.utils_1.7.5                      R.oo_1.8.0
[25] IRanges_1.10.4                     R.methodsS3_1.2.1
loaded via a namespace (and not attached):
[1] Biobase_2.12.1 grid_2.13.0    hwriter_1.3    tools_2.13.0

And I use install.packages or install package from local zip files, both commands failed to install the package.

> install.packages("RepitoolsExamples")
Installing package(s) into ‘C:/Users/Yanchun/Documents/R/win-library/2.13’
(as ‘lib’ is unspecified)
--- Please select a CRAN mirror for use in this session ---
Warning message:
In getDependencies(pkgs, dependencies, available, lib) :
  package ‘RepitoolsExamples’ is not available (for R version 2.13.0)
> utils:::menuInstallLocal()
Error in gzfile(file, "r") : cannot open the connection
In addition: Warning messages:
1: In unzip(zipname, exdir = dest) : error 1 in extracting from zip file
2: In gzfile(file, "r") :
  cannot open compressed file 'RepitoolsExamples_1.0.10.tar.gz/DESCRIPTION', probable reason 'No such file or directory'
>
> install.packages("RepitoolsExamples", repos = "http://r-forge.r-project.org<http://r-forge.r-project.org/>")
Installing package(s) into ‘C:/Users/Hongsheng/Documents/R/win-library/2.13’
(as ‘lib’ is unspecified)
Warning message:
In getDependencies(pkgs, dependencies, available, lib) :
  package ‘RepitoolsExamples’ is not available (for R version 2.13.0)
>
Can anybody help me on that? Thank you very much.

Yanchun Bao