[Rcppoctave-user] Cannot install rcppoctave

[kam kammon]

Thanks, just opened an issue at github.

Date: Mon, 1 Jun 2015 12:30:47 +0200
Subject: Re: [Rcppoctave-user] Cannot install rcppoctave
From: renaud at mancala.cbio.uct.ac.za
To: kammon101 at hotmail.ca
CC: rcppoctave-user at lists.r-forge.r-project.org

Ok, that's a compatiblity bug.Looking for CC_VERSION in in http://www.gnu.org/software/octave/NEWS-4.0.html tells us that the config variable changed name.I have a fix for this now.Can you please open an issue on GitHub: https://github.com/renozao/RcppOctave/issues
Thanks
On 30 May 2015 at 12:20, kam kammon <kammon101 at hotmail.ca> wrote:



Hi, 

RcppOctave no longer works for Octave 4.0.0 which was just released.
Tried reinstall (from develop branch) and got the errors

Error : /tmp/Rtmpk5fzV0/devtools441847599d4d/renozao-RcppOctave-44ada3d/man/o_addpath.Rd:40: .onLoad failed in loadNamespace() for 'RcppOctave', details:
  call: FUN(X[[i]], ...)
  error: RcppOctave - error in Octave function `octave_config_info`:
  octave_config_info: invalid parameter 'CC_VERSION'

ERROR: installing Rd objects failed for package ‘RcppOctave’
* removing ‘/usr/lib/R/library/RcppOctave’
Warning: namespace ‘RcppOctave’ is not available and has been replaced
by .GlobalEnv when processing object ‘’
Error: Command failed (1)

Thanks.

From: kammon101 at hotmail.ca
To: renaud at mancala.cbio.uct.ac.za
Date: Wed, 13 May 2015 18:39:51 -0400
CC: rcppoctave-user at lists.r-forge.r-project.org
Subject: Re: [Rcppoctave-user] Cannot install rcppoctave




Hi, 

I installed the development version in R with the command 

devtools::install_github('renozao/RcppOctave', ref = 'develop')

I suppose it is the develop branch since the master of github apparently hasn't been updated for a year
https://github.com/renozao/RcppOctave

Thanks.


Date: Wed, 13 May 2015 11:42:21 +0200
Subject: Re: [Rcppoctave-user] Cannot install rcppoctave
From: renaud at mancala.cbio.uct.ac.za
To: kammon101 at hotmail.ca
CC: rcppoctave-user at lists.r-forge.r-project.org

Hi,
yes I need to push out a release of the development version.From which github branch did you install: master or develop?
Thanks.
Renaud
On 8 May 2015 at 06:14, kam kammon <kammon101 at hotmail.ca> wrote:



Hi, 

I have having the same errors installing RcppOctave as reported back in Nov 11 2014.

Ran install.packages('RcppOctave') in R and got 

"Error : /tmp/RtmpV72mPb/R.INSTALL8bb4108467/RcppOctave/man/o_addpath.Rd:40: .onLoad failed in loadNamespace() for 'RcppOctave', details:
  call: lapply(X = X, FUN = FUN, ...)
  error: object 'dlibs' not found" "

The development version for RcppOctave installed without a problem.

This time R version is 3.2.0 on a clean install of Ubuntu 15.04 64 bits. Octave version is 3.8.2 but this time is complied with  the ./configure options --with-hdf5-includedir=/usr/include/hdf5/serial --with-hdf5-libdir=/usr/lib/x86_64-linux-gnu/hdf5/serial 

Ubuntu 15.04  now allows installing both the serial and openmpi versions for hdf5 they are installed in the subdirectories .../hdf5/serial and ../hdf5/openmpi respectively. Octave seems to have a problem picking up  hdf5 in the openmpi subdirectory so  I used the serial version.

Thanks.
 		 	   		  

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