[Rcpp-devel] unable to load shared object - Symbol not found

Ismail SEZEN sezenismail at gmail.com
Sun Jul 16 14:09:11 CEST 2017


Hello all,

I had a package that I wrote myself with Rcpp code. After Rcpp 0.12.12 update, I can not build and install the package and I’m getting the error below:

** testing if installed package can be loaded
Error: package or namespace load failed for ‘rpbl’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/Users/isezen/Library/R/3.4/library/rpbl/libs/rpbl.so':
  dlopen(/Users/isezen/Library/R/3.4/library/rpbl/libs/rpbl.so, 6): Symbol not found: _rpbl_hef2
  Referenced from: /Users/isezen/Library/R/3.4/library/rpbl/libs/rpbl.so
  Expected in: flat namespace
 in /Users/isezen/Library/R/3.4/library/rpbl/libs/rpbl.so
Error: loading failed
Execution halted
ERROR: loading failed
* removing ‘/Users/isezen/Library/R/3.4/library/rpbl’

The only difference is C++ native routines with underscore (in RcppExports.R and RcppExports.cpp files)  as mentioned in Dirk’s post.

Generate C++ native routines with underscore ("_") prefix to
             avoid exporting when standard exportPattern is used in
             NAMESPACE (JJ in #725 addressing #723).

the whole package and the code can be found here: https://github.com/isezen/rpbl

And my session info:

R> sessionInfo()
R version 3.4.1 (2017-06-30)
Platform: x86_64-apple-darwin16.6.0 (64-bit)
Running under: macOS Sierra 10.12.5

Matrix products: default
BLAS: /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib
LAPACK: /opt/local/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libRlapack.dylib

locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

attached base packages:
[1] stats     graphics  grDevices datasets  utils     methods   base     

other attached packages:
[1] lintr_1.0.0

loaded via a namespace (and not attached):
 [1] compiler_3.4.1            lazyeval_0.2.0            magrittr_1.5             
 [4] tools_3.4.1               rex_1.1.1                 RcppArmadillo_0.7.900.2.0
 [7] withr_1.0.2               Rcpp_0.12.12              memoise_1.1.0            
[10] digest_0.6.12             RcppParallel_4.3.20       devtools_1.13.2

Thanks for your help.

İsmail SEZEN




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