[Rcpp-devel] RcppModules with templated class
Dirk Eddelbuettel
edd at debian.org
Mon Sep 1 14:27:01 CEST 2014
On 1 September 2014 at 10:48, Dr Gregory Jefferis wrote:
| Hello,
|
| I have a more or less complete Rcpp(Eigen) dependent package that
| exposes a pair of C++ classes to R using RcppModules;the C++ classes
| (which implement k nearest neighbour search trees) differ only in their
| scalar storage type (float vs double) and are called WKNND and WKNNF.
| For future flexibility/maintenance I would have like to convert the C++
| classes to templated code. Is it possible to use RcppModules to expose
| template classes? I know that Rcpp in general can be used with template
| classes, but the RcppModules manual does not seem to mention this.
I am not sure. Rcpp Modules is another very nice, and very clever piece of
work by Romain. It does a number of tricks well.
But in this case consider that
a) R itself only knows double so at some point both variants need to be
promoted up
b) Rcpp does a lot of magic for the C++ classes / member functions which
become callable by R BUT recall that R does not have type signatures.
So foo(const double & x) and foo(const float & x) look the same to R.
| I have tried to implement this by simple translation of my existing code
| to a single WKNN class and then defining types for WKNND and WKNNF
| (i.e. double and float). However this falls over with errors/notes
| indicating that the automatic wrap/conversion of Eigen types is failing
| to pick up the typedef. Error:
|
| In file included from WKNND.cpp:1:
| In file included from
| /Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rcpp/include/Rcpp.h:27:
| In file included from
| /Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rcpp/include/RcppCommon.h:169:
| In file included from
| /Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rcpp/include/Rcpp/as.h:25:
| /Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rcpp/include/Rcpp/internal/Exporter.h:31:28:
| error: no matching constructor for initialization of 'WKNN<double>'
| Exporter( SEXP x ) : t(x){}
| ^ ~
| and notes like:
|
| ./WKNN.h:14:8: note: candidate constructor (the implicit copy
| constructor) not viable: cannot convert argument of incomplete type
| 'SEXP' (aka 'SEXPREC *') to 'const WKNN<double>'
| struct WKNN {
| ^
| ./WKNN.h:16:3: note: candidate constructor not viable: cannot convert
| argument of incomplete type 'SEXP' (aka 'SEXPREC *') to 'const
| Eigen::Map<Eigen::Matrix<double, Dynamic, Dynamic> >'
| WKNN(const Eigen::Map<Eigen::Matrix<T, Dynamic, Dynamic> > data, bool
| buildtree=true);
| ^
|
| So is there a way round this? Do I have to write an explicit wrap
Maybe, or maybe bite the bullet on this one now, and just typedef to one of
your two implementations?
Dirk
| function? Do I have to give up on using RcppModules altogether? Any
| advice or pointers to a package already doing this would be much
| appreciated. And of course big thanks to Dirk, Romain and Douglas et al
| for these great packages.
|
| Best wishes,
|
| Greg.
|
| PS Code on this branch:
|
| https://github.com/jefferis/nabor/tree/feature/template-WKNN
|
| with these 2 commits making the changes:
|
| https://github.com/jefferis/nabor/commit/fa85ddae5187f1e93801d7ec36d1d78923384cc6
| https://github.com/jefferis/nabor/commit/9ff93e63023b2f6d9c7ddad54fb7d1f503685b86
|
|
| --
| Gregory Jefferis, PhD
| Division of Neurobiology
| MRC Laboratory of Molecular Biology
| Francis Crick Avenue
| Cambridge Biomedical Campus
| Cambridge, CB2 OQH, UK
|
| http://www2.mrc-lmb.cam.ac.uk/group-leaders/h-to-m/g-jefferis
| http://jefferislab.org
| http://flybrain.stanford.edu
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--
http://dirk.eddelbuettel.com | @eddelbuettel | edd at debian.org
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