[Rcpp-devel] no matching function for call in mzR on Mac after Rcpp 0.11.0 update

[Jack Howarth]

After updating the bioconductor packages to the Bioc 2.14 release, I ran in
to this failure on Mac OS X 10.9 with the clang compilers from Xcode 5.1.1.
Interestingly, this failure doesn't occur on Mac OS X  10.8 with the clang
compilers from Xcode 5.1.1 which suggests it somehow libc++ related. The
error below is suppressed on 10.9 f I append -stdlib=libstdc++ to the
compile line so it is definitely libc++ specific.
             Jack
ps The error I see in mzR  using Rcpp 0.11.1 is…

clang++ -I/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/include
-DNDEBUG -D_LARGEFILE_SOURCE -I./boost_aux/ -I. -DHAVE_PWIZ_MZML_LIB
-D_NODEBUG -I/sw/include -I"/sw/lib/R/3.1/site-library/Rcpp/include"
-fPIC  -g -O3  -c boost/regex/src/posix_api.cpp -o
boost/regex/src/posix_api.o
In file included from boost/regex/src/posix_api.cpp:22:
In file included from ./boost/regex.hpp:31:
In file included from ./boost/regex/v4/regex.hpp:67:
./boost/regex/v4/basic_regex.hpp:149:9: error: too few template arguments
for class template 'vector'
   std::vector<name> m_sub_names;
        ^
./boost/detail/container_fwd.hpp:82:47: note: template is declared here
    template <class T, class Allocator> class vector;
    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~       ^
In file included from boost/regex/src/posix_api.cpp:22:
In file included from ./boost/regex.hpp:31:
In file included from ./boost/regex/v4/regex.hpp:67:
./boost/regex/v4/basic_regex.hpp:131:21: error: too few template arguments
for class template 'vector'
      typename std::vector<name>::const_iterator pos =
std::lower_bound(m_sub_names.begin(), m_sub_names.end(), t);
                    ^
./boost/detail/container_fwd.hpp:82:47: note: template is declared here
    template <class T, class Allocator> class vector;
    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~       ^
In file included from boost/regex/src/posix_api.cpp:22:
In file included from ./boost/regex.hpp:31:
In file included from ./boost/regex/v4/regex.hpp:67:
./boost/regex/v4/basic_regex.hpp:131:35: error: expected a qualified name
after 'typename'
      typename std::vector<name>::const_iterator pos =
std::lower_bound(m_sub_names.begin(), m_sub_names.end(), t);
                                  ^
./boost/regex/v4/basic_regex.hpp:131:35: error: unknown type name
'const_iterator'
./boost/regex/v4/basic_regex.hpp:141:21: error: too few template arguments
for class template 'vector'
      typename std::vector<name>::const_iterator pos =
std::lower_bound(m_sub_names.begin(), m_sub_names.end(), t);
                    ^
./boost/detail/container_fwd.hpp:82:47: note: template is declared here
    template <class T, class Allocator> class vector;
    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~       ^
In file included from boost/regex/src/posix_api.cpp:22:
In file included from ./boost/regex.hpp:31:
In file included from ./boost/regex/v4/regex.hpp:67:
./boost/regex/v4/basic_regex.hpp:141:35: error: expected a qualified name
after 'typename'
      typename std::vector<name>::const_iterator pos =
std::lower_bound(m_sub_names.begin(), m_sub_names.end(), t);
                                  ^
./boost/regex/v4/basic_regex.hpp:141:35: error: unknown type name
'const_iterator'
./boost/regex/v4/basic_regex.hpp:163:12: error: too few template arguments
for class template 'vector'
      std::vector<Other> v;
           ^
./boost/detail/container_fwd.hpp:82:47: note: template is declared here
    template <class T, class Allocator> class vector;
    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~       ^
In file included from boost/regex/src/posix_api.cpp:22:
In file included from ./boost/regex.hpp:31:
In file included from ./boost/regex/v4/regex.hpp:67:
./boost/regex/v4/basic_regex.hpp:228:9: error: too few template arguments
for class template 'vector'
   std::vector<
        ^
./boost/detail/container_fwd.hpp:82:47: note: template is declared here
    template <class T, class Allocator> class vector;
    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~       ^
In file included from boost/regex/src/posix_api.cpp:22:
In file included from ./boost/regex.hpp:31:
In file included from ./boost/regex/v4/regex.hpp:67:
./boost/regex/v4/basic_regex.hpp:269:9: error: too few template arguments
for class template 'basic_string'
   std::basic_string<charT> BOOST_REGEX_CALL str()const
        ^
./boost/detail/container_fwd.hpp:63:65: note: template is declared here
    template <class charT, class traits, class Allocator> class
basic_string;
    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~       ^
In file included from boost/regex/src/posix_api.cpp:22:
In file included from ./boost/regex.hpp:31:
In file included from ./boost/regex/v4/regex.hpp:67:
./boost/regex/v4/basic_regex.hpp:271:12: error: too few template arguments
for class template 'basic_string'
      std::basic_string<charT> result;
           ^
./boost/detail/container_fwd.hpp:63:65: note: template is declared here
    template <class charT, class traits, class Allocator> class
basic_string;
    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~       ^
In file included from boost/regex/src/posix_api.cpp:22:
In file included from ./boost/regex.hpp:31:
In file included from ./boost/regex/v4/regex.hpp:67:
./boost/regex/v4/basic_regex.hpp:273:24: error: too few template arguments
for class template 'basic_string'
         result = std::basic_string<charT>(this->m_expression,
this->m_expression_len);
                       ^
./boost/detail/container_fwd.hpp:63:65: note: template is declared here
    template <class charT, class traits, class Allocator> class
basic_string;
    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~       ^
In file included from boost/regex/src/posix_api.cpp:22:
In file included from ./boost/regex.hpp:31:
In file included from ./boost/regex/v4/regex.hpp:67:
./boost/regex/v4/basic_regex.hpp:285:68: error: implicit instantiation of
undefined template 'std::pair<unsigned long, unsigned long>'
      std::pair<const_iterator, const_iterator> p(expression() + pi.first,
expression() + pi.second);
                                                                   ^
./boost/detail/container_fwd.hpp:92:42: note: template is declared here
    template <class T1, class T2> struct pair;
                                         ^
In file included from boost/regex/src/posix_api.cpp:22:
In file included from ./boost/regex.hpp:31:
In file included from ./boost/regex/v4/regex.hpp:67:
./boost/regex/v4/basic_regex.hpp:527:9: error: too few template arguments
for class template 'basic_string'
   std::basic_string<charT> BOOST_REGEX_CALL str()const
        ^
./boost/detail/container_fwd.hpp:63:65: note: template is declared here
    template <class charT, class traits, class Allocator> class
basic_string;
    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~       ^
In file included from boost/regex/src/posix_api.cpp:22:
In file included from ./boost/regex.hpp:31:
In file included from ./boost/regex/v4/regex.hpp:67:
./boost/regex/v4/basic_regex.hpp:529:52: error: too few template arguments
for class template 'basic_string'
      return m_pimpl.get() ? m_pimpl->str() : std::basic_string<charT>();
                                                   ^
./boost/detail/container_fwd.hpp:63:65: note: template is declared here
    template <class charT, class traits, class Allocator> class
basic_string;
    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~       ^
In file included from boost/regex/src/posix_api.cpp:22:
In file included from ./boost/regex.hpp:31:
In file included from ./boost/regex/v4/regex.hpp:70:
./boost/regex/v4/basic_regex_creator.hpp:140:26: error: too few template
arguments for class template 'vector'
   typedef typename std::vector<digraph_type>::const_iterator
 list_iterator;
                         ^
./boost/detail/container_fwd.hpp:82:47: note: template is declared here
    template <class T, class Allocator> class vector;
    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~       ^
In file included from boost/regex/src/posix_api.cpp:22:
In file included from ./boost/regex.hpp:31:
In file included from ./boost/regex/v4/regex.hpp:70:
./boost/regex/v4/basic_regex_creator.hpp:140:48: error: expected a
qualified name after 'typename'
   typedef typename std::vector<digraph_type>::const_iterator
 list_iterator;
                                               ^
./boost/regex/v4/basic_regex_creator.hpp:140:62: error: expected ';' at end
of declaration list
   typedef typename std::vector<digraph_type>::const_iterator
 list_iterator;
                                                             ^
                                                             ;
./boost/regex/v4/basic_regex_creator.hpp:141:4: error: unknown type name
'list_iterator'
   list_iterator singles_begin()const
   ^
fatal error: too many errors emitted, stopping now [-ferror-limit=]
20 errors generated.
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