[Rcpp-devel] Package built with Rcpp fails to install
Dirk Eddelbuettel
edd at debian.org
Mon Feb 3 20:52:24 CET 2014
On 3 February 2014 at 21:35, Tal Galili wrote:
| Dear all,
|
| Dirk -
| I have now re-checked, and the package loads fine on my machine, and it is
| completely synced with github.
| The only files in my gitignore are:
| .Rproj.user
| .Rhistory
| .RData
| src/*.o
| src/*.so
| src/*.dll
| So I suspect that the versions are indeed the same.
|
| Kevin - thanks.
|
| Romain -
| I am glad you have an idea for what the problem might be. However, I am not
| sure I understand how to proceed in fixing it.
|
|
| Since the package is very minimalistic, any specific examples on what can be
| improved would be of great help.
As I mentioned off-list to you, this is possibly a compiler mismatch, and
newer versions tend to be stricter.
But by Occam's Razor, I also suspect that you are building locally against a
different Rcpp version.
What you had were __basic compiler errors__. You need to fix those, and that
may involve setting up a VM with a different build environment.
Dirk
|
|
|
| Thanks everyone,
| Tal
|
|
|
|
|
|
| ----------------Contact
| Details:-------------------------------------------------------
| Contact me: Tal.Galili at gmail.com |
| Read me: www.talgalili.com (Hebrew) | www.biostatistics.co.il (Hebrew) |
| www.r-statistics.com (English)
| ----------------------------------------------------------------------------------------------
|
|
|
| On Mon, Feb 3, 2014 at 9:12 PM, Romain Francois <romain at r-enthusiasts.com>
| wrote:
|
| The problem is likely to be that it was assumed that List derives from
| RObject.
|
| It used to, it does not anymore.
|
| Classes from the api now use a policy based design. See andrei
| alexandrescu's modern c++ book for the why and the how of policy based
| design.
|
| .
|
| Envoyé de mon iPhone
|
| Le 3 févr. 2014 à 20:01, Kevin Ushey <kevinushey at gmail.com> a écrit :
|
| > Hi Tal,
| >
| > I get the same error with the new CRAN Rcpp, 0.11.0. I'll try to take
| > a look later.
| >
| > -Kevin
| >
| > On Mon, Feb 3, 2014 at 10:32 AM, Tal Galili <tal.galili at gmail.com> wrote:
| >> Dear Rcpp people,
| >>
| >> I am trying to get a new package to CRAN called {dendextendRcpp}. Here
| is
| >> the repos:
| >> https://github.com/talgalili/dendextendRcpp
| >>
| >> (note that this package relies on the {dendextend} which has just been
| >> released to CRAN today :) )
| >>
| >>
| >> The package loads fine for me (on R-devel, with Windows 7), however Kurt
| >> Hornik (CRAN maintainer) could not get the package to load on Linux.
| >> Following is the error massage that he got. Any input (either here or on
| the
| >> git repo) will be most appreciated.
| >>
| >> With regards,
| >> Tal
| >>
| >> ========================
| >>
| >> (p.s: I suspect this might be because I use .hpp files in src. Should I
| use
| >> something else?)
| >>
| >>
| >>
| >> * installing *source* package 'dendextendRcpp' ...
| >> ** libs
| >> clang++ -std=c++11 -I/home/Hornik/tmp/R-d-clang/include -DNDEBUG
| >> -I/usr/local/include
| >> -I"/home/Hornik/lib/R/Library/3.1/x86_64-linux-gnu/Rcpp/include" -fpic
| -g
| >> -O3 -Wall -Wno-unused -pedantic -c RcppExports.cpp -o RcppExports.o
| >> clang++ -std=c++11 -I/home/Hornik/tmp/R-d-clang/include -DNDEBUG
| >> -I/usr/local/include
| >> -I"/home/Hornik/lib/R/Library/3.1/x86_64-linux-gnu/Rcpp/include" -fpic
| -g
| >> -O3 -Wall -Wno-unused -pedantic -c cut_lower.cpp -o cut_lower.o
| >> cut_lower.cpp:35:7: error: no matching function for call to 'get_height'
| >> if(get_height(tree) <= height) {
| >> ^~~~~~~~~~
| >> ./get_branches_heights.hpp:29:8: note: candidate function not viable: no
| >> known conversion from 'List' (aka 'Vector<19>') to 'RObject' (aka
| >> 'RObject_Impl<PreserveStorage>') for 1st argument
| >> double get_height(RObject x);
| >> ^
| >> cut_lower.cpp:36:13: error: no matching member function for call to
| >> 'push_back'
| >> lower.push_back(tree);
| >> ~~~~~~^~~~~~~~~
| >> /usr/bin/../lib/gcc/x86_64-linux-gnu/4.8/../../../../include/c++/4.8/
| bits/stl_vector.h:901:7:
| >> note: candidate function not viable: no known conversion from 'List'
| (aka
| >> 'Vector<19>') to 'const value_type' (aka 'const
| >> Rcpp::RObject_Impl<PreserveStorage>') for 1st argument
| >> push_back(const value_type& __x)
| >> ^
| >> /usr/bin/../lib/gcc/x86_64-linux-gnu/4.8/../../../../include/c++/4.8/
| bits/stl_vector.h:919:7:
| >> note: candidate function not viable: no known conversion from 'List'
| (aka
| >> 'Vector<19>') to 'value_type' (aka 'Rcpp::RObject_Impl<PreserveStorage>
| ')
| >> for 1st argument
| >> push_back(value_type&& __x)
| >> ^
| >> cut_lower.cpp:84:7: error: no matching function for call to 'is_leaf'
| >> if(is_leaf( tree )) {
| >> ^~~~~~~
| >> ./is_functions.hpp:35:6: note: candidate function not viable: no known
| >> conversion from 'List' (aka 'Vector<19>') to 'RObject' (aka
| >> 'RObject_Impl<PreserveStorage>') for 1st argument
| >> bool is_leaf(RObject x);
| >> ^
| >> 3 errors generated.
| >> make: *** [cut_lower.o] Error 1
| >> clang++ -std=c++11 -I/home/Hornik/tmp/R-d-clang/include -DNDEBUG
| >> -I/usr/local/include
| >> -I"/home/Hornik/lib/R/Library/3.1/x86_64-linux-gnu/Rcpp/include" -fpic
| -g
| >> -O3 -Wall -Wno-unused -pedantic -c cut_lower.cpp -o cut_lower.o
| >> cut_lower.cpp:35:7: error: no matching function for call to 'get_height'
| >> if(get_height(tree) <= height) {
| >> ^~~~~~~~~~
| >> ./get_branches_heights.hpp:29:8: note: candidate function not viable: no
| >> known conversion from 'List' (aka 'Vector<19>') to 'RObject' (aka
| >> 'RObject_Impl<PreserveStorage>') for 1st argument
| >> double get_height(RObject x);
| >> ^
| >> cut_lower.cpp:36:13: error: no matching member function for call to
| >> 'push_back'
| >> lower.push_back(tree);
| >> ~~~~~~^~~~~~~~~
| >> /usr/bin/../lib/gcc/x86_64-linux-gnu/4.8/../../../../include/c++/4.8/
| bits/stl_vector.h:901:7:
| >> note: candidate function not viable: no known conversion from 'List'
| (aka
| >> 'Vector<19>') to 'const value_type' (aka 'const
| >> Rcpp::RObject_Impl<PreserveStorage>') for 1st argument
| >> push_back(const value_type& __x)
| >> ^
| >> /usr/bin/../lib/gcc/x86_64-linux-gnu/4.8/../../../../include/c++/4.8/
| bits/stl_vector.h:919:7:
| >> note: candidate function not viable: no known conversion from 'List'
| (aka
| >> 'Vector<19>') to 'value_type' (aka 'Rcpp::RObject_Impl<PreserveStorage>
| ')
| >> for 1st argument
| >> push_back(value_type&& __x)
| >> ^
| >> cut_lower.cpp:84:7: error: no matching function for call to 'is_leaf'
| >> if(is_leaf( tree )) {
| >> ^~~~~~~
| >> ./is_functions.hpp:35:6: note: candidate function not viable: no known
| >> conversion from 'List' (aka 'Vector<19>') to 'RObject' (aka
| >> 'RObject_Impl<PreserveStorage>') for 1st argument
| >> bool is_leaf(RObject x);
| >> ^
| >> 3 errors generated.
| >> make: *** [cut_lower.o] Error 1
| >> ERROR: compilation failed for package 'dendextendRcpp'
| >> * removing '/home/Hornik/tmp/CRAN/dendextendRcpp.Rcheck/dendextendRcpp'
| >>
| >>
| >> _______________________________________________
| >> Rcpp-devel mailing list
| >> Rcpp-devel at lists.r-forge.r-project.org
| >> https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/rcpp-devel
| > _______________________________________________
| > Rcpp-devel mailing list
| > Rcpp-devel at lists.r-forge.r-project.org
| > https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/rcpp-devel
|
|
|
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--
Dirk Eddelbuettel | edd at debian.org | http://dirk.eddelbuettel.com
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