[Rcpp-devel] Package built with Rcpp fails to install
Tal Galili
tal.galili at gmail.com
Mon Feb 3 20:35:02 CET 2014
Dear all,
Dirk -
I have now re-checked, and the package loads fine on my machine, and it is
completely synced with github.
The only files in my gitignore are:
.Rproj.user
.Rhistory
.RData
src/*.o
src/*.so
src/*.dll
So I suspect that the versions are indeed the same.
Kevin - thanks.
Romain -
I am glad you have an idea for what the problem might be. However, I am not
sure I understand how to proceed in fixing it.
Since the package is very minimalistic, any specific examples on what can
be improved would be of great help.
Thanks everyone,
Tal
----------------Contact
Details:-------------------------------------------------------
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On Mon, Feb 3, 2014 at 9:12 PM, Romain Francois <romain at r-enthusiasts.com>wrote:
> The problem is likely to be that it was assumed that List derives from
> RObject.
>
> It used to, it does not anymore.
>
> Classes from the api now use a policy based design. See andrei
> alexandrescu's modern c++ book for the why and the how of policy based
> design.
>
> .
>
> Envoyé de mon iPhone
>
> Le 3 févr. 2014 à 20:01, Kevin Ushey <kevinushey at gmail.com> a écrit :
>
> > Hi Tal,
> >
> > I get the same error with the new CRAN Rcpp, 0.11.0. I'll try to take
> > a look later.
> >
> > -Kevin
> >
> > On Mon, Feb 3, 2014 at 10:32 AM, Tal Galili <tal.galili at gmail.com>
> wrote:
> >> Dear Rcpp people,
> >>
> >> I am trying to get a new package to CRAN called {dendextendRcpp}. Here
> is
> >> the repos:
> >> https://github.com/talgalili/dendextendRcpp
> >>
> >> (note that this package relies on the {dendextend} which has just been
> >> released to CRAN today :) )
> >>
> >>
> >> The package loads fine for me (on R-devel, with Windows 7), however Kurt
> >> Hornik (CRAN maintainer) could not get the package to load on Linux.
> >> Following is the error massage that he got. Any input (either here or
> on the
> >> git repo) will be most appreciated.
> >>
> >> With regards,
> >> Tal
> >>
> >> ========================
> >>
> >> (p.s: I suspect this might be because I use .hpp files in src. Should I
> use
> >> something else?)
> >>
> >>
> >>
> >> * installing *source* package 'dendextendRcpp' ...
> >> ** libs
> >> clang++ -std=c++11 -I/home/Hornik/tmp/R-d-clang/include -DNDEBUG
> >> -I/usr/local/include
> >> -I"/home/Hornik/lib/R/Library/3.1/x86_64-linux-gnu/Rcpp/include"
> -fpic -g
> >> -O3 -Wall -Wno-unused -pedantic -c RcppExports.cpp -o RcppExports.o
> >> clang++ -std=c++11 -I/home/Hornik/tmp/R-d-clang/include -DNDEBUG
> >> -I/usr/local/include
> >> -I"/home/Hornik/lib/R/Library/3.1/x86_64-linux-gnu/Rcpp/include"
> -fpic -g
> >> -O3 -Wall -Wno-unused -pedantic -c cut_lower.cpp -o cut_lower.o
> >> cut_lower.cpp:35:7: error: no matching function for call to 'get_height'
> >> if(get_height(tree) <= height) {
> >> ^~~~~~~~~~
> >> ./get_branches_heights.hpp:29:8: note: candidate function not viable: no
> >> known conversion from 'List' (aka 'Vector<19>') to 'RObject' (aka
> >> 'RObject_Impl<PreserveStorage>') for 1st argument
> >> double get_height(RObject x);
> >> ^
> >> cut_lower.cpp:36:13: error: no matching member function for call to
> >> 'push_back'
> >> lower.push_back(tree);
> >> ~~~~~~^~~~~~~~~
> >>
> /usr/bin/../lib/gcc/x86_64-linux-gnu/4.8/../../../../include/c++/4.8/bits/stl_vector.h:901:7:
> >> note: candidate function not viable: no known conversion from 'List'
> (aka
> >> 'Vector<19>') to 'const value_type' (aka 'const
> >> Rcpp::RObject_Impl<PreserveStorage>') for 1st argument
> >> push_back(const value_type& __x)
> >> ^
> >>
> /usr/bin/../lib/gcc/x86_64-linux-gnu/4.8/../../../../include/c++/4.8/bits/stl_vector.h:919:7:
> >> note: candidate function not viable: no known conversion from 'List'
> (aka
> >> 'Vector<19>') to 'value_type' (aka
> 'Rcpp::RObject_Impl<PreserveStorage>')
> >> for 1st argument
> >> push_back(value_type&& __x)
> >> ^
> >> cut_lower.cpp:84:7: error: no matching function for call to 'is_leaf'
> >> if(is_leaf( tree )) {
> >> ^~~~~~~
> >> ./is_functions.hpp:35:6: note: candidate function not viable: no known
> >> conversion from 'List' (aka 'Vector<19>') to 'RObject' (aka
> >> 'RObject_Impl<PreserveStorage>') for 1st argument
> >> bool is_leaf(RObject x);
> >> ^
> >> 3 errors generated.
> >> make: *** [cut_lower.o] Error 1
> >> clang++ -std=c++11 -I/home/Hornik/tmp/R-d-clang/include -DNDEBUG
> >> -I/usr/local/include
> >> -I"/home/Hornik/lib/R/Library/3.1/x86_64-linux-gnu/Rcpp/include"
> -fpic -g
> >> -O3 -Wall -Wno-unused -pedantic -c cut_lower.cpp -o cut_lower.o
> >> cut_lower.cpp:35:7: error: no matching function for call to 'get_height'
> >> if(get_height(tree) <= height) {
> >> ^~~~~~~~~~
> >> ./get_branches_heights.hpp:29:8: note: candidate function not viable: no
> >> known conversion from 'List' (aka 'Vector<19>') to 'RObject' (aka
> >> 'RObject_Impl<PreserveStorage>') for 1st argument
> >> double get_height(RObject x);
> >> ^
> >> cut_lower.cpp:36:13: error: no matching member function for call to
> >> 'push_back'
> >> lower.push_back(tree);
> >> ~~~~~~^~~~~~~~~
> >>
> /usr/bin/../lib/gcc/x86_64-linux-gnu/4.8/../../../../include/c++/4.8/bits/stl_vector.h:901:7:
> >> note: candidate function not viable: no known conversion from 'List'
> (aka
> >> 'Vector<19>') to 'const value_type' (aka 'const
> >> Rcpp::RObject_Impl<PreserveStorage>') for 1st argument
> >> push_back(const value_type& __x)
> >> ^
> >>
> /usr/bin/../lib/gcc/x86_64-linux-gnu/4.8/../../../../include/c++/4.8/bits/stl_vector.h:919:7:
> >> note: candidate function not viable: no known conversion from 'List'
> (aka
> >> 'Vector<19>') to 'value_type' (aka
> 'Rcpp::RObject_Impl<PreserveStorage>')
> >> for 1st argument
> >> push_back(value_type&& __x)
> >> ^
> >> cut_lower.cpp:84:7: error: no matching function for call to 'is_leaf'
> >> if(is_leaf( tree )) {
> >> ^~~~~~~
> >> ./is_functions.hpp:35:6: note: candidate function not viable: no known
> >> conversion from 'List' (aka 'Vector<19>') to 'RObject' (aka
> >> 'RObject_Impl<PreserveStorage>') for 1st argument
> >> bool is_leaf(RObject x);
> >> ^
> >> 3 errors generated.
> >> make: *** [cut_lower.o] Error 1
> >> ERROR: compilation failed for package 'dendextendRcpp'
> >> * removing '/home/Hornik/tmp/CRAN/dendextendRcpp.Rcheck/dendextendRcpp'
> >>
> >>
> >> _______________________________________________
> >> Rcpp-devel mailing list
> >> Rcpp-devel at lists.r-forge.r-project.org
> >> https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/rcpp-devel
> > _______________________________________________
> > Rcpp-devel mailing list
> > Rcpp-devel at lists.r-forge.r-project.org
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>
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