[Rcpp-devel] R-2.15 installation interfering with R-3.0
Dirk Eddelbuettel
edd at debian.org
Tue Jun 25 18:27:44 CEST 2013
On 21 June 2013 at 13:49, Pratibha Rana wrote:
| I looked at all the build steps and didn't find anything suspicious. The
| makefile has a lot of extra stuff but this is what essentially builds my
| app. I must mention that the crash occurs only if I'm building on R-3.0
| . All works well if I build with R-2.15
Maybe you forgot to rebuild RInside with R 3.0.{0,1} ? We can't tell.
| gcc -shared-libgcc -Wl,-E -Wl,-dn -Wl,--hash-size=100000 -Wl,--stats
| -Wl,--demangle -Wl,-Map,udx-R.map udx-RID.o
| /scratch_a/release/vbuild/Linux64/UDxFence/udx-R.o
| /scratch_a/release/vbuild/Linux64/UDxFence/RInterface.o -Wl,-dn
| -lprotobuf-lite -Wl,-dy
| -L/scratch_a/release/vbuild/third-party/install/lib64/R/lib -lR
| -Wl,-rpath,/scratch_a/release/vbuild/third-party/install/lib64/R/lib
| -L/scratch_a/release/vbuild/third-party/install/lib64/R/lib -lRblas
| -L/scratch_a/release/vbuild/third-party/install/lib64/R/lib -lRlapack
| -L/scratch_a/release/vbuild/third-party/install/lib64/R/library/Rcpp/lib
| -lRcpp
| -Wl,-rpath,/scratch_a/release/vbuild/third-party/install/lib64/R/library/Rcpp/lib
| -L/scratch_a/release/vbuild/third-party/install/lib64/R/library/RInside/lib
| -lRInside
| -Wl,-rpath,/scratch_a/release/vbuild/third-party/install/lib64/R/library/RInside/lib
| -L/scratch_a/release/vbuild/Linux64/pgbuild/src/port
| -L/scratch_a/release/vbuild/udx/../third-party/install/spread/lib
| -L/scratch_a/release/vbuild/udx/../third-party/install/lib -lpgport_srv
| -lz -lbz2 -Wl,-dy -lncurses -Wl,-dn -lcurl -lcrypt -lnsl -lxerces-c
| -lnetsnmp -lsicui18n -lsicuuc -lsicudata -lutil -lldap_r -lgssapi_krb5
| -lkrb5 -lkrb5support -lk5crypto -lpcre -lresolv -llber -lssl -lcrypto
| -lcom_err -lspread -llzo2 -lboost_serialization-gcc-mt
| -lboost_thread-gcc-mt -lprotobuf-lite -ljson -lm -lstdc++ -Wl,-dy -lrt
| -lc -ldl -lpthread -o udx-R
You may want to start thinking about reducing the complexity of this build a
little in order to focus on where your problem arises. We do ship you an
"existence proof" of a working example. Build from there.
Dirk
--
Dirk Eddelbuettel | edd at debian.org | http://dirk.eddelbuettel.com
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