[Rcpp-devel] Problem Installing RcppExamples on Mac OS X 10.8.1

[Benilton Carvalho]

Hi Dirk,

will definitely check on this. Please, don't apologise for anything.

b

On 3 September 2012 14:38, Dirk Eddelbuettel <edd at debian.org> wrote:
>
> On 2 September 2012 at 18:01, Benilton Carvalho wrote:
> | The error is exactly the same if I run
> |
> | install.packages('RcppExamples', type='source')
> |
> | (given the absence of a configure, I wouldnt expect INSTALL_opts to
> | make a difference)
> |
> | This is a fresh install of R (the binaries from Simon's website),
> | installed to the standard location and simply using my home dir to
> | store the additional packages I choose to use. Installing the Mac
> | binary version of RcppExamples seems to be okay, but I do have the
> | preference of installing packages from the source.
>
> Could I ask you to investigate with the powers-that-be concerning OS X and
> report back?
>
> I do not have such a machine, and can only state that
>
>    a) CRAN seems to be doing ok with the package per
>       http://cran.r-project.org/web/checks/check_results_RcppExamples.html
>
>    b) R-Forge seems to be doing ok as well per the package page, here is the
>       OS X build log:
>       http://r-forge.r-project.org/R/?group_id=155&log=build_mac&pkg=RcppExamples&flavor=patched
>
> Sorry for your troubles, but there is nothing more I can do without a
> Mac. Maybe some others can pipe in.
>
> Dirk
>
>
> | b
> |
> |
> | On 2 September 2012 17:10, Dirk Eddelbuettel <edd at debian.org> wrote:
> | >
> | > On 2 September 2012 at 16:55, Benilton Carvalho wrote:
> | > | Hi,
> | > |
> | > | I'm trying to install the RcppExamples packages. I'm running Mac OS X
> | > | 10.8.1 and R 2.15.1.
> | > |
> | > | I start the installation with:
> | > |
> | > | install.packages('RcppExamples', INSTALL_opts='--merge-multiarch',
> | > | type='source')
> | >
> | > What happens when you omit the INSTALL_opts argument?
> | >
> | > | and everything goes okay until I get the error shown at the end of the message.
> | > |
> | > | Any thoughts on how to proceed?
> | > |
> | > | thank you,
> | > |
> | > | benilton
> | > |
> | > | --
> | > |
> | > | g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
> | > | -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
> | > | -I/usr/local/include
> | > | -I"/Volumes/DataPartition/Users/beniltoncarvalho/Rlibs/2.15/RcppClassic/include"
> | > | -I"/Volumes/DataPartition/Users/beniltoncarvalho/Rlibs/2.15/Rcpp/include"
> | > |   -fPIC  -g -O2  -c newRcppVectorExample.cpp -o newRcppVectorExample.o
> | > | Error in tools:::file_path_as_absolute(base:::system.file(..., package
> | > | = "RcppClassic")) :
> | > |   file '' does not exist
> | >
> | > Something is not right here, and things usually work (witness availability of
> | > RcppExamples on all CRAN platforms, as well as on R-Forge).
> | >
> | > I'd try to minimize whatever differences you have in your setup.
> | >
> | > Dirk
> | >
> | > | Calls: <Anonymous> ... RcppClassicLdPath -> RcppClassic.system.file ->
> | > | <Anonymous>
> | > | Execution halted
> | > | g++ -arch x86_64 -dynamiclib -Wl,-headerpad_max_install_names
> | > | -undefined dynamic_lookup -single_module -multiply_defined suppress
> | > | -L/usr/local/lib -o RcppExamples.so RcppDataFrame.o RcppRNGs.o
> | > | classicRcppDateExample.o classicRcppExample.o
> | > | classicRcppMatrixExample.o classicRcppParamsExample.o
> | > | classicRcppStringVectorExample.o classicRcppVectorExample.o
> | > | newRcppDateExample.o newRcppMatrixExample.o newRcppParamsExample.o
> | > | newRcppStringVectorExample.o newRcppVectorExample.o
> | > | /Volumes/DataPartition/Users/beniltoncarvalho/Rlibs/2.15/Rcpp/lib/x86_64/libRcpp.a
> | > | -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework
> | > | -Wl,CoreFoundation
> | > | Error in tools:::file_path_as_absolute(base:::system.file(..., package
> | > | = "RcppClassic")) :
> | > |   file '' does not exist
> | > | Calls: <Anonymous> ... RcppClassicLdPath -> RcppClassic.system.file ->
> | > | <Anonymous>
> | > | Execution halted
> | > | installing to /Volumes/DataPartition/Users/beniltoncarvalho/Rlibs/2.15/RcppExamples/libs/x86_64
> | > | ** testing if installed package can be loaded
> | > | Error in dyn.load(file, DLLpath = DLLpath, ...) :
> | > |   unable to load shared object
> | > | '/Volumes/DataPartition/Users/beniltoncarvalho/Rlibs/2.15/RcppExamples/libs/x86_64/RcppExamples.so':
> | > |   dlopen(/Volumes/DataPartition/Users/beniltoncarvalho/Rlibs/2.15/RcppExamples/libs/x86_64/RcppExamples.so,
> | > | 6): Symbol not found: __Z14copyMessageToRPKc
> | > |   Referenced from:
> | > | /Volumes/DataPartition/Users/beniltoncarvalho/Rlibs/2.15/RcppExamples/libs/x86_64/RcppExamples.so
> | > |   Expected in: flat namespace
> | > |  in /Volumes/DataPartition/Users/beniltoncarvalho/Rlibs/2.15/RcppExamples/libs/x86_64/RcppExamples.so
> | > | Error: loading failed
> | > | Execution halted
> | > | ERROR: loading failed
> | > | * removing ‘/Volumes/DataPartition/Users/beniltoncarvalho/Rlibs/2.15/RcppExamples’
> | > | * restoring previous
> | > | ‘/Volumes/DataPartition/Users/beniltoncarvalho/Rlibs/2.15/RcppExamples’
> | > |
> | > | The downloaded source packages are in
> | > |       ‘/private/var/folders/sp/_dsm23tj7c1glq1hjgdf53500000gn/T/RtmpMsIbCd/downloaded_packages’
> | > | Warning message:
> | > | In install.packages("RcppExamples", INSTALL_opts = "--merge-multiarch",  :
> | > |   installation of package ‘RcppExamples’ had non-zero exit status
> | > | > sessionInfo()
> | > | R version 2.15.1 Patched (2012-09-01 r60533)
> | > | Platform: i386-apple-darwin9.8.0/i386 (32-bit)
> | > |
> | > | locale:
> | > | [1] en_GB.UTF-8/en_GB.UTF-8/en_GB.UTF-8/C/en_GB.UTF-8/en_GB.UTF-8
> | > |
> | > | attached base packages:
> | > | [1] stats     graphics  grDevices datasets  utils     methods   base
> | > |
> | > | other attached packages:
> | > | [1] BiocInstaller_1.4.7
> | > |
> | > | loaded via a namespace (and not attached):
> | > | [1] tcltk_2.15.1 tools_2.15.1
> | > | _______________________________________________
> | > | Rcpp-devel mailing list
> | > | Rcpp-devel at lists.r-forge.r-project.org
> | > | https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/rcpp-devel
> | >
> | > --
> | > Dirk Eddelbuettel | edd at debian.org | http://dirk.eddelbuettel.com
>
> --
> Dirk Eddelbuettel | edd at debian.org | http://dirk.eddelbuettel.com