[Rcpp-devel] Difficulty Compiling RcppClassic Package on Windows
Dirk Eddelbuettel
edd at debian.org
Sat Jun 11 07:20:42 CEST 2011
Hi Tim,
On 10 June 2011 at 21:31, Tim Jurka wrote:
| Hello Rcpp-Devel,
|
| This is my first question posted to this list, so please remind me if I'm missing crucial details in my inquiry!
|
| I have successfully interfaced Yoshimasa Tsuruoka's excellent C++ maximum
| entropy library ( http://www-tsujii.is.s.u-tokyo.ac.jp/~tsuruoka/maxent/ )
| using RcppClassic,
First time I hear about maxent. Does it use RcppClassic, or did you choose to
use it? As you may know, we kindly suggest for folks to use the new API as
it more well tested.
| and everything compiles cleanly on *NIX and OS X when compiled from source (via the same method described below). However, when I try to install from my repository on a Windows 7 machine (using R 2.12.1 64-bit), it starts throwing a lot of errors. I have RTools installed, with both the 32-bit and 64-bit options selected, and a blank Rcpp package skeleton compiles fine on my machine. Could anyone point me in the right direction as to what's going differently on Windows vs my *NIX machines?
|
| Thank you in advance for any help!
| Tim
|
| The commands I run in R look like:
| repositories <- c("http://install.rtexttools.com/","http://cran.r-project.org","http://www.omegahat.org/R")
| install.packages("maxent", repos=repositories, type="source")
|
| My Makevars.win file looks like:
| PKG_LIBS = $(shell "${R_HOME}/bin${R_ARCH_BIN}/Rscript.exe" -e "Rcpp:::LdFlags()")
| PKG_LIBS += $(shell "${R_HOME}/bin${R_ARCH_BIN}/Rscript.exe" -e "RcppClassic:::LdFlags()")
|
| These headers are included in all files with Rcpp code:
| #include <RcppClassic.h>
| #include <R.h>
| #include <Rmath.h>
|
| And the error output looks like (for both 32-bit and 64-bit builds, error output is identical for both g++ and x86_64-w64-mingw32-g++):
I only have one quick idea -- 'long long' is something the g++ 4.5 and 4.6
compilers do not tolerate (more below). In one or two few places in Rcpp (new
API) we use the following via RcppCommon.h:
#ifdef __GNUC__
#ifdef __GXX_EXPERIMENTAL_CXX0X__
#ifdef LONG_LONG_MAX
__extension__ typedef long long int rcpp_long_long_type;
__extension__ typedef unsigned long long int rcpp_ulong_long_type;
#define RCPP_HAS_LONG_LONG_TYPES
#endif
#endif
#endif
So if g++ is used and if the "__GXX_EXPERIMENTAL_CXX0X__" feature is turned
of (which you get via option g++ option "-std=c++0x" option), then and only
then is rcpp_long_long_type and its unsigned variant defined, along with a
#define for it.
The net effect is that normally we do not have -std=c++0x on, hence this
becomes false ... and the compiler never sees 'long long'. Which is a good
thing as g++ 4.5/4.6 now see it as an error (as it was missing from C++ 1998
and was introduced only in C++ 2003 which g++ 4.5/4.6 now interpret more
strictly / correctly).
So the Rcpp that RcppClassic tries to link against may not have, whereas the
code you are using may have it, hence the error.
That is of course just a guess, and I may be wrong.
Hope this helps, Dirk
| x86_64-w64-mingw32-g++ -shared -s -static-libgcc -o maxent.dll tmp.def blmvm.o maxent.o rmaxent.o C:/Users/timjurka/Documents/R/win-library/2.12/Rcpp/lib/x64/libRcpp.a C:/Users/timjurka/Documents/R/win-library/2.12/RcppClassic/lib/x64/libRcppClassic.a -LC:/PROGRA~1/R/R-212~1.1/bin/x64 -lR
| C:/Users/timjurka/Documents/R/win-library/2.12/RcppClassic/lib/x64/libRcppClassic.a(RcppResultSet.o):RcppResultSet.cpp:(.text+0x1a4): undefined reference to `Rcpp::internal::getPosixClasses()'
| C:/Users/timjurka/Documents/R/win-library/2.12/RcppClassic/lib/x64/libRcppClassic.a(RcppResultSet.o):RcppResultSet.cpp:(.text+0x66): undefined reference to `Rcpp::internal::new_date_object(double)'
| C:/Users/timjurka/Documents/R/win-library/2.12/RcppClassic/lib/x64/libRcppClassic.a(RcppResultSet.o):RcppResultSet.cpp:(.text+0x7d): undefined reference to `Rcpp::internal::new_posixt_object(double)'
| C:/Users/timjurka/Documents/R/win-library/2.12/RcppClassic/lib/x64/libRcppClassic.a(RcppResultSet.o):RcppResultSet.cpp:(.text$_ZN13RcppResultSet16add__matrix__stdIiEEvRKSsRKSt6vectorIS3_IT_SaIS4_EESaIS6_EE[void RcppResultSet::add__matrix__std<int>(std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::vector<std::vector<int, std::allocator<int> >, std::allocator<std::vector<int, std::allocator<int> > > > const&)]+0x115): undefined reference to `Rcpp::Dimension::Dimension(unsigned long long const&, unsigned long long const&)'
| C:/Users/timjurka/Documents/R/win-library/2.12/RcppClassic/lib/x64/libRcppClassic.a(RcppResultSet.o):RcppResultSet.cpp:(.text$_ZN13RcppResultSet16add__matrix__stdIiEEvRKSsRKSt6vectorIS3_IT_SaIS4_EESaIS6_EE[void RcppResultSet::add__matrix__std<int>(std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::vector<std::vector<int, std::allocator<int> >, std::allocator<std::vector<int, std::allocator<int> > > > const&)]+0x15a): undefined reference to `Rcpp::Dimension::prod() const'
| C:/Users/timjurka/Documents/R/win-library/2.12/RcppClassic/lib/x64/libRcppClassic.a(RcppResultSet.o):RcppResultSet.cpp:(.text$_ZN13RcppResultSet16add__matrix__stdIiEEvRKSsRKSt6vectorIS3_IT_SaIS4_EESaIS6_EE[void RcppResultSet::add__matrix__std<int>(std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::vector<std::vector<int, std::allocator<int> >, std::allocator<std::vector<int, std::allocator<int> > > > const&)]+0x190): undefined reference to `Rcpp::Dimension::size() const'
| C:/Users/timjurka/Documents/R/win-library/2.12/RcppClassic/lib/x64/libRcppClassic.a(RcppResultSet.o):RcppResultSet.cpp:(.text$_ZN13RcppResultSet16add__matrix__stdIiEEvRKSsRKSt6vectorIS3_IT_SaIS4_EESaIS6_EE[void RcppResultSet::add__matrix__std<int>(std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::vector<std::vector<int, std::allocator<int> >, std::allocator<std::vector<int, std::allocator<int> > > > const&)]+0x200): undefined reference to `Rcpp::Dimension::operator SEXPREC*() const'
| C:/Users/timjurka/Documents/R/win-library/2.12/RcppClassic/lib/x64/libRcppClassic.a(RcppResultSet.o):RcppResultSet.cpp:(.text$_ZN13RcppResultSet11add__matrixIiEEvRKSsPPT_ii[void RcppResultSet::add__matrix<int>(std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, int**, int, int)]+0xc7): undefined reference to `Rcpp::Dimension::Dimension(unsigned long long const&, unsigned long long const&)'
| C:/Users/timjurka/Documents/R/win-library/2.12/RcppClassic/lib/x64/libRcppClassic.a(RcppResultSet.o):RcppResultSet.cpp:(.text$_ZN13RcppResultSet11add__matrixIiEEvRKSsPPT_ii[void RcppResultSet::add__matrix<int>(std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, int**, int, int)]+0x106): undefined reference to `Rcpp::Dimension::prod() const'
| C:/Users/timjurka/Documents/R/win-library/2.12/RcppClassic/lib/x64/libRcppClassic.a(RcppResultSet.o):RcppResultSet.cpp:(.text$_ZN13RcppResultSet11add__matrixIiEEvRKSsPPT_ii[void RcppResultSet::add__matrix<int>(std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, int**, int, int)]+0x13c): undefined reference to `Rcpp::Dimension::size() const'
| C:/Users/timjurka/Documents/R/win-library/2.12/RcppClassic/lib/x64/libRcppClassic.a(RcppResultSet.o):RcppResultSet.cpp:(.text$_ZN13RcppResultSet11add__matrixIiEEvRKSsPPT_ii[void RcppResultSet::add__matrix<int>(std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, int**, int, int)]+0x1a3): undefined reference to `Rcpp::Dimension::operator SEXPREC*() const'
| C:/Users/timjurka/Documents/R/win-library/2.12/RcppClassic/lib/x64/libRcppClassic.a(RcppResultSet.o):RcppResultSet.cpp:(.text$_ZN13RcppResultSet16add__matrix__stdIdEEvRKSsRKSt6vectorIS3_IT_SaIS4_EESaIS6_EE[void RcppResultSet::add__matrix__std<double>(std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::vector<std::vector<double, std::allocator<double> >, std::allocator<std::vector<double, std::allocator<double> > > > const&)]+0x115): undefined reference to `Rcpp::Dimension::Dimension(unsigned long long const&, unsigned long long const&)'
| C:/Users/timjurka/Documents/R/win-library/2.12/RcppClassic/lib/x64/libRcppClassic.a(RcppResultSet.o):RcppResultSet.cpp:(.text$_ZN13RcppResultSet16add__matrix__stdIdEEvRKSsRKSt6vectorIS3_IT_SaIS4_EESaIS6_EE[void RcppResultSet::add__matrix__std<double>(std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::vector<std::vector<double, std::allocator<double> >, std::allocator<std::vector<double, std::allocator<double> > > > const&)]+0x15a): undefined reference to `Rcpp::Dimension::prod() const'
| C:/Users/timjurka/Documents/R/win-library/2.12/RcppClassic/lib/x64/libRcppClassic.a(RcppResultSet.o):RcppResultSet.cpp:(.text$_ZN13RcppResultSet16add__matrix__stdIdEEvRKSsRKSt6vectorIS3_IT_SaIS4_EESaIS6_EE[void RcppResultSet::add__matrix__std<double>(std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::vector<std::vector<double, std::allocator<double> >, std::allocator<std::vector<double, std::allocator<double> > > > const&)]+0x190): undefined reference to `Rcpp::Dimension::size() const'
| C:/Users/timjurka/Documents/R/win-library/2.12/RcppClassic/lib/x64/libRcppClassic.a(RcppResultSet.o):RcppResultSet.cpp:(.text$_ZN13RcppResultSet16add__matrix__stdIdEEvRKSsRKSt6vectorIS3_IT_SaIS4_EESaIS6_EE[void RcppResultSet::add__matrix__std<double>(std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::vector<std::vector<double, std::allocator<double> >, std::allocator<std::vector<double, std::allocator<double> > > > const&)]+0x200): undefined reference to `Rcpp::Dimension::operator SEXPREC*() const'
| C:/Users/timjurka/Documents/R/win-library/2.12/RcppClassic/lib/x64/libRcppClassic.a(RcppResultSet.o):RcppResultSet.cpp:(.text$_ZN13RcppResultSet11add__matrixIdEEvRKSsPPT_ii[void RcppResultSet::add__matrix<double>(std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, double**, int, int)]+0xc7): undefined reference to `Rcpp::Dimension::Dimension(unsigned long long const&, unsigned long long const&)'
| C:/Users/timjurka/Documents/R/win-library/2.12/RcppClassic/lib/x64/libRcppClassic.a(RcppResultSet.o):RcppResultSet.cpp:(.text$_ZN13RcppResultSet11add__matrixIdEEvRKSsPPT_ii[void RcppResultSet::add__matrix<double>(std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, double**, int, int)]+0x106): undefined reference to `Rcpp::Dimension::prod() const'
| C:/Users/timjurka/Documents/R/win-library/2.12/RcppClassic/lib/x64/libRcppClassic.a(RcppResultSet.o):RcppResultSet.cpp:(.text$_ZN13RcppResultSet11add__matrixIdEEvRKSsPPT_ii[void RcppResultSet::add__matrix<double>(std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, double**, int, int)]+0x13c): undefined reference to `Rcpp::Dimension::size() const'
| C:/Users/timjurka/Documents/R/win-library/2.12/RcppClassic/lib/x64/libRcppClassic.a(RcppResultSet.o):RcppResultSet.cpp:(.text$_ZN13RcppResultSet11add__matrixIdEEvRKSsPPT_ii[void RcppResultSet::add__matrix<double>(std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, double**, int, int)]+0x1a3): undefined reference to `Rcpp::Dimension::operator SEXPREC*() const'
| collect2: ld returned 1 exit status
| ERROR: compilation failed for package 'maxent'
| * removing 'C:/Users/timjurka/Documents/R/win-library/2.12/maxent'
|
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