[Rcpp-devel] Error running RInside examples
amao oluwole
newnigeb at gmail.com
Fri Jan 14 20:40:36 CET 2011
Thanks for the quick reply!!
I did install R with shared library enabled. I use the following command:
{my path}/R-2.12.1> ./configure --prefix={my path}/OOPHD2011/R-2.12.1
--enable-R-shlib
After running I get the configure script I get the following output:
...
R is now configured for powerpc64-unknown-linux-gnu
Source directory: .
Installation directory: {my path}/OOPHD2011/R-2.12.1
C compiler: gcc -std=gnu99 -g -O2
Fortran 77 compiler: gfortran -g -O2
C++ compiler: g++ -g -O2
Fortran 90/95 compiler: gfortran -g -O2
Obj-C compiler: gcc -g -O2
Interfaces supported: X11
External libraries: readline
Additional capabilities: PNG, JPEG, TIFF, NLS
Options enabled: shared R library, shared BLAS, R profiling,
Java
Recommended packages: yes
configure: WARNING: you cannot build DVI versions of the R manuals
configure: WARNING: you cannot build DVI versions of all the help pages
configure: WARNING: you cannot build info or HTML versions of the R manuals
configure: WARNING: you cannot build PDF versions of the R manuals
configure: WARNING: you cannot build PDF versions of all the help pages
configure: WARNING: I could not determine a browser
I then installed the Rcpp and RInside packages.
I have gotten the examples to work. I installed the packages by downloading
them directly from the CRAN download page and ran
R CMD INSTALL Rcpp_0.9.0.tar.gz
and
R CMD INSTALL RInside_0.2.3.tar
Thanks for a great product!!
On Fri, Jan 14, 2011 at 12:04 PM, Dirk Eddelbuettel <edd at debian.org> wrote:
>
> On 14 January 2011 at 11:45, amao oluwole wrote:
> | Hi all,
> | I hope this is the correct mailing list for this question. I have
>
> Yes! Thanks for posting here, and welcome!
>
> | successfully installed R-2.12.1, and the latest version of the Rcpp and
> RInside
> | packages on a linux operating system by using the commands:
> |
> | install.packages("Rcpp", repos="http://R-Forge.R-project.org")
> | install.packages("RInside", repos="http://R-Forge.R-project.org")
> |
> | I then added the bin and lib paths to my environmental variable.
> |
> | To test the install, I compiled the examples in
> RInside/inst/examples/standard
> | successfully. When I tried to run the simple hello world application,
> | rinside_sample0.cpp program, I got the following error:
> |
> | examples/standard> ./rinside_sample0
> | terminate called after throwing an instance of
> 'Rcpp::index_out_of_bounds'
> | what(): index out of bounds
> | Abort
> |
> | examples/standard>
> |
> | Am I running the example executable correctly? I do not understand why
> the
> | error occurs.
>
> You did not supply sufficient detail.
>
> Despite what a certain malcontent keeps repeating and misrepresenting here,
> there is a release process for Rcpp. Which, inter alia, involves running
> all
> known examples, tests, ... in Rcpp and some other packages, including
> RInside.
>
> So see below for a quick 'make clean; make; ./rinside_sample0' on my
> machine.
> I may right now be current with Rcpp from SVN rather than the released
> 0.9.0
> but the same tests where ran with the preceding releases, incl 0.9.0, and I
> could easily flip back to Rcpp if you needed to validate something.
>
> So in short: make sure you have current and correct packages, R correctly
> configured (ie the last person requesting help had not built R as a shared
> library, that cannot work) and run the examples documented (ie 'make'
> should
> do). If there are errors or warning with make, look at those.
>
> Please do feel free to come back with further questions.
>
> Hope this helps, Dirk
>
>
> Below is a cut and pasted session copy from an emacs shell buffer where the
> command gets echo'ed. This uses some compile/link flags I have in
> ~/.R/Makevars but that is not material either.
>
> edd at max:~/svn/rinside/pkg/inst/examples/standard$ make clean
> make clean
> rm -vf rinside_callbacks0 rinside_module_sample0 rinside_sample0
> rinside_sample1 rinside_sample2 rinside_sample3 rinside_sample4
> rinside_sample5 rinside_sample6 rinside_sample7 rinside_sample8
> rinside_sample9 rinside_test0 rinside_test1
> removed `rinside_callbacks0'
> removed `rinside_module_sample0'
> removed `rinside_sample0'
> removed `rinside_sample1'
> removed `rinside_sample2'
> removed `rinside_sample3'
> removed `rinside_sample4'
> removed `rinside_sample5'
> removed `rinside_sample6'
> removed `rinside_sample7'
> removed `rinside_sample8'
> removed `rinside_sample9'
> removed `rinside_test0'
> removed `rinside_test1'
> rm -vrf *.dSYM
> edd at max:~/svn/rinside/pkg/inst/examples/standard$ make
> make
> g++ -I/usr/share/R/include -I/usr/local/lib/R/site-library/Rcpp/include
> -I"/usr/local/lib/R/site-library/RInside/include" -O3 -pipe -g -Wall
> rinside_callbacks0.cpp -L/usr/lib64/R/lib -lR -lblas -llapack
> -L/usr/local/lib/R/site-library/Rcpp/lib -lRcpp
> -Wl,-rpath,/usr/local/lib/R/site-library/Rcpp/lib
> -L/usr/local/lib/R/site-library/RInside/lib -lRInside
> -Wl,-rpath,/usr/local/lib/R/site-library/RInside/lib -o rinside_callbacks0
> g++ -I/usr/share/R/include -I/usr/local/lib/R/site-library/Rcpp/include
> -I"/usr/local/lib/R/site-library/RInside/include" -O3 -pipe -g -Wall
> rinside_module_sample0.cpp -L/usr/lib64/R/lib -lR -lblas -llapack
> -L/usr/local/lib/R/site-library/Rcpp/lib -lRcpp
> -Wl,-rpath,/usr/local/lib/R/site-library/Rcpp/lib
> -L/usr/local/lib/R/site-library/RInside/lib -lRInside
> -Wl,-rpath,/usr/local/lib/R/site-library/RInside/lib -o
> rinside_module_sample0
> g++ -I/usr/share/R/include -I/usr/local/lib/R/site-library/Rcpp/include
> -I"/usr/local/lib/R/site-library/RInside/include" -O3 -pipe -g -Wall
> rinside_sample0.cpp -L/usr/lib64/R/lib -lR -lblas -llapack
> -L/usr/local/lib/R/site-library/Rcpp/lib -lRcpp
> -Wl,-rpath,/usr/local/lib/R/site-library/Rcpp/lib
> -L/usr/local/lib/R/site-library/RInside/lib -lRInside
> -Wl,-rpath,/usr/local/lib/R/site-library/RInside/lib -o rinside_sample0
> g++ -I/usr/share/R/include -I/usr/local/lib/R/site-library/Rcpp/include
> -I"/usr/local/lib/R/site-library/RInside/include" -O3 -pipe -g -Wall
> rinside_sample1.cpp -L/usr/lib64/R/lib -lR -lblas -llapack
> -L/usr/local/lib/R/site-library/Rcpp/lib -lRcpp
> -Wl,-rpath,/usr/local/lib/R/site-library/Rcpp/lib
> -L/usr/local/lib/R/site-library/RInside/lib -lRInside
> -Wl,-rpath,/usr/local/lib/R/site-library/RInside/lib -o rinside_sample1
> g++ -I/usr/share/R/include -I/usr/local/lib/R/site-library/Rcpp/include
> -I"/usr/local/lib/R/site-library/RInside/include" -O3 -pipe -g -Wall
> rinside_sample2.cpp -L/usr/lib64/R/lib -lR -lblas -llapack
> -L/usr/local/lib/R/site-library/Rcpp/lib -lRcpp
> -Wl,-rpath,/usr/local/lib/R/site-library/Rcpp/lib
> -L/usr/local/lib/R/site-library/RInside/lib -lRInside
> -Wl,-rpath,/usr/local/lib/R/site-library/RInside/lib -o rinside_sample2
> g++ -I/usr/share/R/include -I/usr/local/lib/R/site-library/Rcpp/include
> -I"/usr/local/lib/R/site-library/RInside/include" -O3 -pipe -g -Wall
> rinside_sample3.cpp -L/usr/lib64/R/lib -lR -lblas -llapack
> -L/usr/local/lib/R/site-library/Rcpp/lib -lRcpp
> -Wl,-rpath,/usr/local/lib/R/site-library/Rcpp/lib
> -L/usr/local/lib/R/site-library/RInside/lib -lRInside
> -Wl,-rpath,/usr/local/lib/R/site-library/RInside/lib -o rinside_sample3
> g++ -I/usr/share/R/include -I/usr/local/lib/R/site-library/Rcpp/include
> -I"/usr/local/lib/R/site-library/RInside/include" -O3 -pipe -g -Wall
> rinside_sample4.cpp -L/usr/lib64/R/lib -lR -lblas -llapack
> -L/usr/local/lib/R/site-library/Rcpp/lib -lRcpp
> -Wl,-rpath,/usr/local/lib/R/site-library/Rcpp/lib
> -L/usr/local/lib/R/site-library/RInside/lib -lRInside
> -Wl,-rpath,/usr/local/lib/R/site-library/RInside/lib -o rinside_sample4
> g++ -I/usr/share/R/include -I/usr/local/lib/R/site-library/Rcpp/include
> -I"/usr/local/lib/R/site-library/RInside/include" -O3 -pipe -g -Wall
> rinside_sample5.cpp -L/usr/lib64/R/lib -lR -lblas -llapack
> -L/usr/local/lib/R/site-library/Rcpp/lib -lRcpp
> -Wl,-rpath,/usr/local/lib/R/site-library/Rcpp/lib
> -L/usr/local/lib/R/site-library/RInside/lib -lRInside
> -Wl,-rpath,/usr/local/lib/R/site-library/RInside/lib -o rinside_sample5
> g++ -I/usr/share/R/include -I/usr/local/lib/R/site-library/Rcpp/include
> -I"/usr/local/lib/R/site-library/RInside/include" -O3 -pipe -g -Wall
> rinside_sample6.cpp -L/usr/lib64/R/lib -lR -lblas -llapack
> -L/usr/local/lib/R/site-library/Rcpp/lib -lRcpp
> -Wl,-rpath,/usr/local/lib/R/site-library/Rcpp/lib
> -L/usr/local/lib/R/site-library/RInside/lib -lRInside
> -Wl,-rpath,/usr/local/lib/R/site-library/RInside/lib -o rinside_sample6
> g++ -I/usr/share/R/include -I/usr/local/lib/R/site-library/Rcpp/include
> -I"/usr/local/lib/R/site-library/RInside/include" -O3 -pipe -g -Wall
> rinside_sample7.cpp -L/usr/lib64/R/lib -lR -lblas -llapack
> -L/usr/local/lib/R/site-library/Rcpp/lib -lRcpp
> -Wl,-rpath,/usr/local/lib/R/site-library/Rcpp/lib
> -L/usr/local/lib/R/site-library/RInside/lib -lRInside
> -Wl,-rpath,/usr/local/lib/R/site-library/RInside/lib -o rinside_sample7
> g++ -I/usr/share/R/include -I/usr/local/lib/R/site-library/Rcpp/include
> -I"/usr/local/lib/R/site-library/RInside/include" -O3 -pipe -g -Wall
> rinside_sample8.cpp -L/usr/lib64/R/lib -lR -lblas -llapack
> -L/usr/local/lib/R/site-library/Rcpp/lib -lRcpp
> -Wl,-rpath,/usr/local/lib/R/site-library/Rcpp/lib
> -L/usr/local/lib/R/site-library/RInside/lib -lRInside
> -Wl,-rpath,/usr/local/lib/R/site-library/RInside/lib -o rinside_sample8
> g++ -I/usr/share/R/include -I/usr/local/lib/R/site-library/Rcpp/include
> -I"/usr/local/lib/R/site-library/RInside/include" -O3 -pipe -g -Wall
> rinside_sample9.cpp -L/usr/lib64/R/lib -lR -lblas -llapack
> -L/usr/local/lib/R/site-library/Rcpp/lib -lRcpp
> -Wl,-rpath,/usr/local/lib/R/site-library/Rcpp/lib
> -L/usr/local/lib/R/site-library/RInside/lib -lRInside
> -Wl,-rpath,/usr/local/lib/R/site-library/RInside/lib -o rinside_sample9
> g++ -I/usr/share/R/include -I/usr/local/lib/R/site-library/Rcpp/include
> -I"/usr/local/lib/R/site-library/RInside/include" -O3 -pipe -g -Wall
> rinside_test0.cpp -L/usr/lib64/R/lib -lR -lblas -llapack
> -L/usr/local/lib/R/site-library/Rcpp/lib -lRcpp
> -Wl,-rpath,/usr/local/lib/R/site-library/Rcpp/lib
> -L/usr/local/lib/R/site-library/RInside/lib -lRInside
> -Wl,-rpath,/usr/local/lib/R/site-library/RInside/lib -o rinside_test0
> g++ -I/usr/share/R/include -I/usr/local/lib/R/site-library/Rcpp/include
> -I"/usr/local/lib/R/site-library/RInside/include" -O3 -pipe -g -Wall
> rinside_test1.cpp -L/usr/lib64/R/lib -lR -lblas -llapack
> -L/usr/local/lib/R/site-library/Rcpp/lib -lRcpp
> -Wl,-rpath,/usr/local/lib/R/site-library/Rcpp/lib
> -L/usr/local/lib/R/site-library/RInside/lib -lRInside
> -Wl,-rpath,/usr/local/lib/R/site-library/RInside/lib -o rinside_test1
> edd at max:~/svn/rinside/pkg/inst/examples/standard$ ./rinside_sample0
> ./rinside_sample0
> Hello, world!
> edd at max:~/svn/rinside/pkg/inst/examples/standard$ ./rinside_sample1
> ./rinside_sample1
> Running ls()
> [1] "argv" "M"
> Showing M
> [,1] [,2] [,3] [,4]
> [1,] 0 1 2 3
> [2,] 10 11 12 13
> [3,] 20 21 22 23
> [4,] 30 31 32 33
> Showing colSums()
> [1] 60 64 68 72
> In C++ element 0 is 60
> In C++ element 1 is 64
> In C++ element 2 is 68
> In C++ element 3 is 72
> edd at max:~/svn/rinside/pkg/inst/examples/standard$
>
> | Thanks!
> |
> | ----------------------------------------------------------------------
> | _______________________________________________
> | Rcpp-devel mailing list
> | Rcpp-devel at lists.r-forge.r-project.org
> | https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/rcpp-devel
>
> --
> Dirk Eddelbuettel | edd at debian.org | http://dirk.eddelbuettel.com
>
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