[Rcpp-devel] RcppGSL broken?

[Yasir Suhail]

It seems that RcppGSL is currently broken. Here is the installation attempt:

> install.packages('RcppGSL')
--- Please select a CRAN mirror for use in this session ---
Loading Tcl/Tk interface ... done
trying URL '
http://watson.nci.nih.gov/cran_mirror/src/contrib/RcppGSL_0.1.1.tar.gz'
Content type 'application/octet-stream' length 405639 bytes (396 Kb)
opened URL
==================================================
downloaded 396 Kb

* installing *source* package ‘RcppGSL’ ...
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for gsl-config... /opt/local/bin/gsl-config
checking for Rscript... yes
configure: creating ./config.status
config.status: creating src/Makevars
** libs
*** arch - x86_64
/opt/local/bin/g++-mp-4.4 -I/opt/local/lib/R/include
-I/opt/local/lib/R/include/x86_64 -I/opt/local/include -I../inst/include
-I/opt/local/include -I"/opt/local/lib/R/library/Rcpp/include"   -fPIC
 -pipe -O2 -g -m64 -c fastLm.cpp -o fastLm.o
In file included from
/opt/local/lib/R/library/Rcpp/include/RcppCommon.h:312,
                 from ../inst/include/RcppGSLForward.h:25,
                 from ../inst/include/RcppGSL.h:23,
                 from fastLm.cpp:22:
/opt/local/lib/R/library/Rcpp/include/Rcpp/internal/export.h: In function
'void Rcpp::internal::export_range(SEXPREC*, InputIterator) [with
InputIterator = long int*]':
../inst/include/RcppGSLForward.h:107:   instantiated from here
/opt/local/lib/R/library/Rcpp/include/Rcpp/internal/export.h:115: error: no
matching function for call to 'export_range__dispatch(SEXPREC*&, long
int*&, Rcpp::traits::r_type_generic_tag)'
/opt/local/lib/R/library/Rcpp/include/Rcpp/internal/export.h: In function
'void Rcpp::internal::export_range(SEXPREC*, InputIterator) [with
InputIterator = long unsigned int*]':
../inst/include/RcppGSLForward.h:113:   instantiated from here
/opt/local/lib/R/library/Rcpp/include/Rcpp/internal/export.h:115: error: no
matching function for call to 'export_range__dispatch(SEXPREC*&, long
unsigned int*&, Rcpp::traits::r_type_generic_tag)'
In file included from
/opt/local/lib/R/library/Rcpp/include/RcppCommon.h:302,
                 from ../inst/include/RcppGSLForward.h:25,
                 from ../inst/include/RcppGSL.h:23,
                 from fastLm.cpp:22:
/opt/local/lib/R/library/Rcpp/include/Rcpp/internal/caster.h: In function
'TO Rcpp::internal::caster(FROM) [with FROM = SEXPREC*, TO = long int]':
../inst/include/RcppGSL_matrix.h:152:   instantiated from here
/opt/local/lib/R/library/Rcpp/include/Rcpp/internal/caster.h:30: error:
invalid static_cast from type 'SEXPREC*' to type 'long int'
/opt/local/lib/R/library/Rcpp/include/Rcpp/internal/caster.h: In function
'TO Rcpp::internal::caster(FROM) [with FROM = SEXPREC*, TO = long unsigned
int]':
../inst/include/RcppGSL_matrix.h:157:   instantiated from here
/opt/local/lib/R/library/Rcpp/include/Rcpp/internal/caster.h:30: error:
invalid static_cast from type 'SEXPREC*' to type 'long unsigned int'
In file included from
/opt/local/lib/R/library/Rcpp/include/RcppCommon.h:320,
                 from ../inst/include/RcppGSLForward.h:25,
                 from ../inst/include/RcppGSL.h:23,
                 from fastLm.cpp:22:
/opt/local/lib/R/library/Rcpp/include/Rcpp/internal/wrap.h: In function
'SEXPREC* Rcpp::internal::wrap_dispatch_importer__impl(const T&,
Rcpp::traits::r_type_generic_tag) [with T =
RcppGSL::gslvector_importer<long int>, elem_type = long int]':
/opt/local/lib/R/library/Rcpp/include/Rcpp/internal/wrap.h:657:
instantiated from 'SEXPREC* Rcpp::internal::wrap_dispatch_importer(const
T&) [with T = RcppGSL::gslvector_importer<long int>, elem_type = long int]'
/opt/local/lib/R/library/Rcpp/include/Rcpp/internal/wrap.h:706:
instantiated from 'SEXPREC*
Rcpp::internal::wrap_dispatch_unknown_importable(const T&,
Rcpp::traits::true_type) [with T = RcppGSL::gslvector_importer<long int>]'
/opt/local/lib/R/library/Rcpp/include/Rcpp/internal/wrap.h:716:
instantiated from 'SEXPREC* Rcpp::internal::wrap_dispatch(const T&,
Rcpp::traits::wrap_type_unknown_tag) [with T =
RcppGSL::gslvector_importer<long int>]'
/opt/local/lib/R/library/Rcpp/include/Rcpp/internal/wrap.h:831:
instantiated from 'SEXPREC* Rcpp::wrap(const T&) [with T =
RcppGSL::gslvector_importer<long int>]'
../inst/include/RcppGSL_vector.h:66:   instantiated from here
/opt/local/lib/R/library/Rcpp/include/Rcpp/internal/wrap.h:627: error:
'const class RcppGSL::gslvector_importer<long int>' has no member named
'wrap'
/opt/local/lib/R/library/Rcpp/include/Rcpp/internal/wrap.h: In function
'SEXPREC* Rcpp::internal::wrap_dispatch_importer__impl(const T&,
Rcpp::traits::r_type_generic_tag) [with T =
RcppGSL::gslvector_importer<long unsigned int>, elem_type = long unsigned
int]':
/opt/local/lib/R/library/Rcpp/include/Rcpp/internal/wrap.h:657:
instantiated from 'SEXPREC* Rcpp::internal::wrap_dispatch_importer(const
T&) [with T = RcppGSL::gslvector_importer<long unsigned int>, elem_type =
long unsigned int]'
/opt/local/lib/R/library/Rcpp/include/Rcpp/internal/wrap.h:706:
instantiated from 'SEXPREC*
Rcpp::internal::wrap_dispatch_unknown_importable(const T&,
Rcpp::traits::true_type) [with T = RcppGSL::gslvector_importer<long
unsigned int>]'
/opt/local/lib/R/library/Rcpp/include/Rcpp/internal/wrap.h:716:
instantiated from 'SEXPREC* Rcpp::internal::wrap_dispatch(const T&,
Rcpp::traits::wrap_type_unknown_tag) [with T =
RcppGSL::gslvector_importer<long unsigned int>]'
/opt/local/lib/R/library/Rcpp/include/Rcpp/internal/wrap.h:831:
instantiated from 'SEXPREC* Rcpp::wrap(const T&) [with T =
RcppGSL::gslvector_importer<long unsigned int>]'
../inst/include/RcppGSL_vector.h:72:   instantiated from here
/opt/local/lib/R/library/Rcpp/include/Rcpp/internal/wrap.h:627: error:
'const class RcppGSL::gslvector_importer<long unsigned int>' has no member
named 'wrap'
/opt/local/lib/R/library/Rcpp/include/Rcpp/internal/wrap.h: In function
'SEXPREC* Rcpp::internal::wrap_dispatch_importer__impl(const T&,
Rcpp::traits::r_type_generic_tag) [with T =
RcppGSL::gslmatrix_importer<long int>, elem_type = long int]':
/opt/local/lib/R/library/Rcpp/include/Rcpp/internal/wrap.h:657:
instantiated from 'SEXPREC* Rcpp::internal::wrap_dispatch_importer(const
T&) [with T = RcppGSL::gslmatrix_importer<long int>, elem_type = long int]'
/opt/local/lib/R/library/Rcpp/include/Rcpp/internal/wrap.h:706:
instantiated from 'SEXPREC*
Rcpp::internal::wrap_dispatch_unknown_importable(const T&,
Rcpp::traits::true_type) [with T = RcppGSL::gslmatrix_importer<long int>]'
/opt/local/lib/R/library/Rcpp/include/Rcpp/internal/wrap.h:716:
instantiated from 'SEXPREC* Rcpp::internal::wrap_dispatch(const T&,
Rcpp::traits::wrap_type_unknown_tag) [with T =
RcppGSL::gslmatrix_importer<long int>]'
/opt/local/lib/R/library/Rcpp/include/Rcpp/internal/wrap.h:831:
instantiated from 'SEXPREC* Rcpp::wrap(const T&) [with T =
RcppGSL::gslmatrix_importer<long int>]'
../inst/include/RcppGSL_matrix.h:81:   instantiated from here
/opt/local/lib/R/library/Rcpp/include/Rcpp/internal/wrap.h:627: error:
'const class RcppGSL::gslmatrix_importer<long int>' has no member named
'wrap'
/opt/local/lib/R/library/Rcpp/include/Rcpp/internal/wrap.h: In function
'SEXPREC* Rcpp::internal::wrap_dispatch_importer__impl(const T&,
Rcpp::traits::r_type_generic_tag) [with T =
RcppGSL::gslmatrix_importer<long unsigned int>, elem_type = long unsigned
int]':
/opt/local/lib/R/library/Rcpp/include/Rcpp/internal/wrap.h:657:
instantiated from 'SEXPREC* Rcpp::internal::wrap_dispatch_importer(const
T&) [with T = RcppGSL::gslmatrix_importer<long unsigned int>, elem_type =
long unsigned int]'
/opt/local/lib/R/library/Rcpp/include/Rcpp/internal/wrap.h:706:
instantiated from 'SEXPREC*
Rcpp::internal::wrap_dispatch_unknown_importable(const T&,
Rcpp::traits::true_type) [with T = RcppGSL::gslmatrix_importer<long
unsigned int>]'
/opt/local/lib/R/library/Rcpp/include/Rcpp/internal/wrap.h:716:
instantiated from 'SEXPREC* Rcpp::internal::wrap_dispatch(const T&,
Rcpp::traits::wrap_type_unknown_tag) [with T =
RcppGSL::gslmatrix_importer<long unsigned int>]'
/opt/local/lib/R/library/Rcpp/include/Rcpp/internal/wrap.h:831:
instantiated from 'SEXPREC* Rcpp::wrap(const T&) [with T =
RcppGSL::gslmatrix_importer<long unsigned int>]'
../inst/include/RcppGSL_matrix.h:87:   instantiated from here
/opt/local/lib/R/library/Rcpp/include/Rcpp/internal/wrap.h:627: error:
'const class RcppGSL::gslmatrix_importer<long unsigned int>' has no member
named 'wrap'
make: *** [fastLm.o] Error 1
ERROR: compilation failed for package ‘RcppGSL’
* removing ‘/opt/local/lib/R/library/RcppGSL’

The downloaded packages are in
‘/private/tmp/RtmpQCqDey/downloaded_packages’
Updating HTML index of packages in '.Library'
Making packages.html  ... done
Warning message:
In install.packages("RcppGSL") :
  installation of package ‘RcppGSL’ had non-zero exit status
>
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