[Rcpp-devel] Rcpp 0.8.3 on Mac OS X 10.5.8

[Ken Knoblauch]

Thanks.  I'm in mode d'attente...

A+

Quoting Romain Francois <romain.francois at dbmail.com>:

>
> Le 13/07/10 13:59, Ken Knoblauch a écrit :
>> Salut Romain,
>>
>> Thanks for your rapid response. Toujours pas de chance.
>>
>> Just for verification, my gcc
>>
>> [Macintosh-83:~] knoblauch% gcc --version
>> i686-apple-darwin9-gcc-4.2.1 (GCC) 4.2.1 (Apple Inc. build 5577)
>> Copyright (C) 2007 Free Software Foundation, Inc.
>> This is free software; see the source for copying conditions. There is NO
>> warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
>
> IIRC, this is the version (both OS and compiler version) that is used
> on CRAN so there is nothing fundamentally wrong about these.
>
> I'm cc'ing the r-sig-mac mailing list where people might have more
> clues, as I am afraid I'm short :-(
>
> Romain
>
>> [Macintosh-83:~] knoblauch% svn checkout
>> svn://svn.r-forge.r-project.org/svnroot/rcpp/pkg
>> A pkg/RcppExamples
>> ...
>>
>> [Macintosh-83:~] knoblauch% cd pkg
>> [Macintosh-83:~/pkg] knoblauch% R CMD INSTALL -l
>> ~/Library/R/2.11/library/ Rcpp
>> * installing *source* package ‘Rcpp’ ...
>> ** libs
>> *** arch - i386
>> g++ -arch i386 -I/Library/Frameworks/R.framework/Resources/include
>> -I/Library/Frameworks/R.framework/Resources/include/i386
>> -I../inst/include/ -I/usr/local/include -fPIC -g -O2 -c Date.cpp -o Date.o
>> ../inst/include/Rcpp/internal/export.h: In function 'void
>> Rcpp::internal::export_range__dispatch(SEXPREC*, InputIterator,
>> Rcpp::traits::r_type_primitive_tag)':
>> ../inst/include/Rcpp/internal/export.h:56: internal compiler error: Bus
>> error
>> Please submit a full bug report,
>> with preprocessed source if appropriate.
>> See <URL:http://developer.apple.com/bugreporter> for instructions.
>> make: *** [Date.o] Error 1
>> ERROR: compilation failed for package ‘Rcpp’
>> * removing ‘/Users/knoblauch/Library/R/2.11/library/Rcpp’
>> * restoring previous ‘/Users/knoblauch/Library/R/2.11/library/Rcpp’
>>
>> So, still the same problem. Could this be a Leopard vs Snow Leopard
>> problem?
>>
>> Thanks.
>>
>> best,
>>
>> Ken
>>
>> PS, I'll subscribe shortly, but went ahead and tried your
>> suggestion first.
>>
>>
>>
>>
>> Quoting Romain Francois <romain at r-enthusiasts.com>:
>>
>>> Bonjour Ken,
>>>
>>> We usually encourage people to use the mailing list (cc'ed) rather than
>>> the maintainer address (you would need to subsribe first)
>>> http://lists.r-forge.r-project.org/mailman/listinfo/rcpp-devel
>>>
>>> I think this was fixed and the version 0.8.4 is on CRAN incoming.
>>>
>>> Could you try the svn version and let us know if it compiles fine, it
>>> certainly does for me on Snow Leopard.
>>>
>>> $ svn checkout svn://svn.r-forge.r-project.org/svnroot/rcpp/pkg
>>> $ R CMD INSTALL Rcpp
>>>
>>> Thanks for your interest in Rcpp.
>>>
>>> FWIW, my version of gcc (on snow leopard) is:
>>>
>>> $ gcc --version
>>> i686-apple-darwin10-gcc-4.2.1 (GCC) 4.2.1 (Apple Inc. build 5659)
>>> Copyright (C) 2007 Free Software Foundation, Inc.
>>> This is free software; see the source for copying conditions. There is NO
>>> warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR
>>> PURPOSE.
>>>
>>> ... time passes ...
>>>
>>> Now this does sound familiar and I think we have seen some similar
>>> errors when Rcpp was inadvertently built with gcc 4.0 on CRAN
>>>
>>> Romain
>>>
>>> Le 13/07/10 13:38, Ken Knoblauch a écrit :
>>>> Hi,
>>>>
>>>> I'm wondering if you can provide any suggestions for installing
>>>> Rcpp on Mac or whether I should await the appearance of a binary?
>>>>
>>>> This is the error message that I get:
>>>>
>>>> R CMD INSTALL --no-multiarch -l ~/Library/R/2.11/library/
>>>> Rcpp_0.8.3.tar.gz
>>>> * installing *source* package ‘Rcpp’ ...
>>>> ** libs
>>>> *** arch - i386
>>>> g++ -arch i386 -I/Library/Frameworks/R.framework/Resources/include
>>>> -I/Library/Frameworks/R.framework/Resources/include/i386
>>>> -I../inst/include/ -I/usr/local/include -fPIC -g -O2 -c Date.cpp -o
>>>> Date.o
>>>> ../inst/include/Rcpp/internal/export.h: In function 'void
>>>> Rcpp::internal::export_range__dispatch(SEXPREC*, InputIterator,
>>>> Rcpp::traits::r_type_primitive_tag)':
>>>> ../inst/include/Rcpp/internal/export.h:56: internal compiler error: Bus
>>>> error
>>>> Please submit a full bug report,
>>>> with preprocessed source if appropriate.
>>>> See <URL:http://developer.apple.com/bugreporter> for instructions.
>>>> make: *** [Date.o] Error 1
>>>> ERROR: compilation failed for package ‘Rcpp’
>>>> * removing ‘/Users/knoblauch/Library/R/2.11/library/Rcpp’
>>>> * restoring previous ‘/Users/knoblauch/Library/R/2.11/library/Rcpp’
>>>>
>>>> Is this a question of having the right compiler or ???
>>>>
>>>> I did this from the command line but my sessionInfo is:
>>>> R version 2.11.1 Patched (2010-07-09 r52501)
>>>> i386-apple-darwin9.8.0
>>>>
>>>> locale:
>>>> [1] en_US.UTF-8/en_US.UTF-8/C/C/en_US.UTF-8/en_US.UTF-8
>>>>
>>>> attached base packages:
>>>> [1] stats graphics grDevices utils datasets methods
>>>> [7] base
>>>>
>>>> I don't have problems compiling any other packages from source except
>>>> lme4a, so I would be greatful for any guidance.
>>>>
>>>> Thanks.
>>>>
>>>> Best,
>>>>
>>>> Ken
>
>
>
> -- 
> Romain Francois
> Professional R Enthusiast
> +33(0) 6 28 91 30 30
> http://romainfrancois.blog.free.fr
> |- http://bit.ly/bc8jNi : Rcpp 0.8.4
> |- http://bit.ly/dz0RlX : bibtex 0.2-1
> `- http://bit.ly/a5CK2h : Les estivales 2010



-- 
Ken Knoblauch
Inserm U846
Stem-cell and Brain Research Institute
Department of Integrative Neurosciences
18 avenue du Doyen Lépine
69500 Bron
France
tel: +33 (0)4 72 91 34 77
fax: +33 (0)4 72 91 34 61
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http://www.sbri.fr/members/kenneth-knoblauch.html

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