[Rcpp-commits] r4543 - scripts testlogs
noreply at r-forge.r-project.org
noreply at r-forge.r-project.org
Sat Sep 28 17:16:23 CEST 2013
Author: edd
Date: 2013-09-28 17:16:23 +0200 (Sat, 28 Sep 2013)
New Revision: 4543
Added:
testlogs/Rcpp-Summary-20130928.R
testlogs/result-20130928-094524.RData
testlogs/result-20130928-094524.txt
Modified:
scripts/runRcppDepends.r
Log:
test results -- 0.10.5 is ready
Modified: scripts/runRcppDepends.r
===================================================================
--- scripts/runRcppDepends.r 2013-09-28 08:38:36 UTC (rev 4542)
+++ scripts/runRcppDepends.r 2013-09-28 15:16:23 UTC (rev 4543)
@@ -9,13 +9,17 @@
rcppset <- sort(unname(AP[unique(c(grep("Rcpp", as.character(AP[,"Depends"])),
grep("Rcpp", as.character(AP[,"LinkingTo"])),
grep("Rcpp", as.character(AP[,"Imports"])))),"Package"]))
-if (grep("transnet", rcppset)) {
- print( rcppset[ ! grepl("transnet", rcppset) ])
-} else {
- print( rcppset )
+if (grep("transnet", rcppset)) { ## not really an Rcpp user
+ rcppset <- rcppset[ ! grepl("transnet", rcppset) ]
}
+#if (grep("BioGeoBears", rcppset)) { ## indirect match, no need to test
+# rcppset <- rcppset[ ! grepl("BioGeoBears", rcppset) ]
+#}
+if (grep("quadrupen", rcppset)) { ## takes hours, skipping
+ rcppset <- rcppset[ ! grepl("quadrupen", rcppset) ]
+}
+print( rcppset )
-rcppset <- rcppset
res <- data.frame(pkg=rcppset, res=NA)
#for (pi in 1:nrow(res)) {
Added: testlogs/Rcpp-Summary-20130928.R
===================================================================
--- testlogs/Rcpp-Summary-20130928.R (rev 0)
+++ testlogs/Rcpp-Summary-20130928.R 2013-09-28 15:16:23 UTC (rev 4543)
@@ -0,0 +1,80 @@
+
+## results here are edited after a second run following manual
+## installation of a number of package missing in the first run
+
+## loads 'res'
+#load("~/svn/rcpp/testlogs/result-20130928-094524.RData")
+
+## Good: dput(as.character(subset(res, res==0, pkg)[,1,drop=TRUE]))
+goodPkg <- c("accelerometry", "acer", "AdaptiveSparsity", "ALKr", "Amelia",
+ "apcluster", "BayesComm", "bcp", "bfa", "bfp", "bifactorial",
+ "blockcluster", "ccaPP", "cda", "cladoRcpp", "clogitL1", "clusteval",
+ "ConConPiWiFun", "coneproj", "Delaporte", "ecp", "EpiContactTrace",
+ "fastGHQuad", "FastPCS", "FastRCS", "FBFsearch", "fdaMixed",
+ "forecast", "gRbase", "gRim", "growcurves", "GSE", "GUTS", "HLMdiag",
+ "httpuv", "inarmix", "jaatha", "Kmisc", "maxent", "minqa", "MPTinR",
+ "msgl", "multmod", "mvabund", "MVB", "NetSim", "NetworkAnalysis",
+ "oem", "phom", "phylobase", "planar", "prospectr", "psgp", "Rankcluster",
+ "RcppArmadillo", "RcppBDT", "rcppbugs", "RcppClassic", "RcppClassicExamples",
+ "RcppCNPy", "RcppDE", "RcppEigen", "RcppExamples", "RcppGSL",
+ "RcppOctave", "RcppProgress", "RcppRoll", "RcppSMC", "RcppXts",
+ "rexpokit", "rforensicbatwing", "rgam", "RInside", "Rmalschains",
+ "RMessenger", "rmgarch", "Rmixmod", "robustgam", "robustHD",
+ "rococo", "rotations", "RProtoBuf", "RQuantLib", "RSNNS", "RSofia",
+ "rugarch", "RVowpalWabbit", "SBSA", "sdcMicro", "sequences",
+ "simFrame", "sparseHessianFD", "sparseLTSEigen", "SpatialTools",
+ "stochvol", "survSNP", "tagcloud", "termstrc", "tmg", "transmission",
+ "trustOptim", "unmarked", "VIM", "waffect", "WideLM", "wordcloud",
+ "zic")
+
+## Bad: dput(as.character(subset(res, res==1, pkg)[,1,drop=TRUE]))
+badPkg <- c("ALDqr", "CDM", "classify", "climdex.pcic", "diversitree",
+ "ExactNumCI", "fugeR", "Funclustering", "geiger", "GeneticTools",
+ "gMWT", "GOsummaries", "KernSmoothIRT", "LaF", "lme4", "marked",
+ "mets", "mirt", "miscF", "ngspatial", "openair", "orQA", "PReMiuM",
+ "sdcTable", "sirt", "spacodiR", "surveillance", "TAM", "tbart")
+
+bad4missing <- c("ALDqr", # 'HyperbolicDist’
+ "CDM", # sirt, TAM
+ "classify", # ‘R2WinBUGS’ ‘R2jags’
+ "climdex.pcic", # 'PCIct'
+ "diversitree", # ‘deSolve’ ‘subplex’
+ "fugeR", # snowfall
+ "Funclustering", # fda
+ "geiger", # ‘msm’ ‘subplex’ ‘deSolve’ ‘coda’ ‘ncbit’
+ "GeneticTools", # ‘gMWT’ ‘snpStats’
+ "gMWT", # ‘clinfun’
+ "GOsummaries", # ‘gProfileR’ ‘limma’
+ "LaF", # 'yaml'
+ "lme4", # MEMSS
+ "marked", # ‘optimx’ ‘coda’ ‘R2admb’
+ "mets", # ‘lava’ ‘timereg’ ‘prodlim’
+ "mirt", # ‘GPArotation’
+ "miscF", # ‘MCMCpack’
+ "ngspatial", # ‘batchmeans’
+ "openair", # ‘latticeExtra’ ‘hexbin’ ‘RgoogleMaps’ ‘png’ ‘mapdata’
+ "orQA", # ‘genefilter’
+ "PReMiuM", # ‘clue’
+ "sdcTable", # ‘lpSolveAPI’
+ "sirt", # ‘pbivnorm’ ‘sfsmisc’
+ "spacodiR", # ‘picante’
+ "surveillance", # ‘spatstat’
+ "TAM", # ‘tensor’ ‘sfsmisc’ ‘GPArotation’ ‘psych’
+ "tbart") # ‘GISTools’
+
+bad4rcpp <- c() # Yay!
+
+## these fail initially but can all be run with some extra effort
+bad4notrcpp <- c("ExactNumCI", # needs BOOSTLIB defined, bad src/ file
+ "KernSmoothIRT") # rgl failed, needs full x11 session
+good <- length(goodPkg)
+bad <- length(bad4missing) + length(bad4rcpp) + length(bad4notrcpp)
+stopifnot(all.equal(bad,length(badPkg))) ## account for GeoBIO
+
+cat("Good ", good, "\n")
+cat("Bad ", bad, "\n")
+cat(" RcppErr ", length(bad4rcpp), "\n")
+cat(" MissDep ", length(bad4missing), "\n")
+cat(" NotRcpp ", length(bad4notrcpp), "\n")
+cat("Total ", good + bad, "\n")
+cat("Error Pct ", length(bad4rcpp) / (good + bad), "\n")
Added: testlogs/result-20130928-094524.RData
===================================================================
(Binary files differ)
Property changes on: testlogs/result-20130928-094524.RData
___________________________________________________________________
Added: svn:mime-type
+ application/octet-stream
Added: testlogs/result-20130928-094524.txt
===================================================================
--- testlogs/result-20130928-094524.txt (rev 0)
+++ testlogs/result-20130928-094524.txt 2013-09-28 15:16:23 UTC (rev 4543)
@@ -0,0 +1,138 @@
+"pkg","res"
+"1","accelerometry",0
+"2","acer",0
+"3","AdaptiveSparsity",0
+"4","ALDqr",1
+"5","ALKr",0
+"6","Amelia",0
+"7","apcluster",0
+"8","BayesComm",0
+"9","bcp",0
+"10","bfa",0
+"11","bfp",0
+"12","bifactorial",0
+"13","BioGeoBEARS",1
+"14","blockcluster",0
+"15","ccaPP",0
+"16","cda",0
+"17","CDM",1
+"18","cladoRcpp",0
+"19","classify",1
+"20","climdex.pcic",1
+"21","clogitL1",0
+"22","clusteval",0
+"23","ConConPiWiFun",0
+"24","coneproj",0
+"25","Delaporte",0
+"26","diversitree",1
+"27","ecp",0
+"28","EpiContactTrace",0
+"29","ExactNumCI",1
+"30","fastGHQuad",0
+"31","FastPCS",0
+"32","FastRCS",0
+"33","FBFsearch",0
+"34","fdaMixed",0
+"35","forecast",0
+"36","fugeR",1
+"37","Funclustering",1
+"38","geiger",1
+"39","GeneticTools",1
+"40","gMWT",1
+"41","GOsummaries",1
+"42","gRbase",0
+"43","gRim",0
+"44","growcurves",0
+"45","GSE",0
+"46","GUTS",0
+"47","HLMdiag",0
+"48","httpuv",0
+"49","inarmix",0
+"50","jaatha",0
+"51","KernSmoothIRT",1
+"52","Kmisc",0
+"53","LaF",1
+"54","lme4",1
+"55","marked",1
+"56","maxent",0
+"57","mets",1
+"58","minqa",0
+"59","mirt",1
+"60","miscF",1
+"61","MPTinR",0
+"62","msgl",0
+"63","multmod",0
+"64","mvabund",0
+"65","MVB",0
+"66","NetSim",0
+"67","NetworkAnalysis",0
+"68","ngspatial",1
+"69","oem",0
+"70","openair",1
+"71","orQA",1
+"72","phom",0
+"73","phylobase",0
+"74","planar",0
+"75","PReMiuM",1
+"76","prospectr",0
+"77","psgp",0
+"78","Rankcluster",0
+"79","RcppArmadillo",0
+"80","RcppBDT",0
+"81","rcppbugs",0
+"82","RcppClassic",0
+"83","RcppClassicExamples",0
+"84","RcppCNPy",0
+"85","RcppDE",0
+"86","RcppEigen",0
+"87","RcppExamples",0
+"88","RcppGSL",0
+"89","RcppOctave",0
+"90","RcppProgress",0
+"91","RcppRoll",0
+"92","RcppSMC",0
+"93","RcppXts",0
+"94","rexpokit",0
+"95","rforensicbatwing",0
+"96","rgam",0
+"97","RInside",0
+"98","Rmalschains",0
+"99","RMessenger",0
+"100","rmgarch",0
+"101","Rmixmod",0
+"102","robustgam",0
+"103","robustHD",0
+"104","rococo",0
+"105","rotations",0
+"106","RProtoBuf",0
+"107","RQuantLib",0
+"108","RSNNS",0
+"109","RSofia",0
+"110","rugarch",0
+"111","RVowpalWabbit",0
+"112","SBSA",0
+"113","sdcMicro",0
+"114","sdcTable",1
+"115","sequences",0
+"116","simFrame",0
+"117","sirt",1
+"118","spacodiR",1
+"119","sparseHessianFD",0
+"120","sparseLTSEigen",0
+"121","SpatialTools",0
+"122","stochvol",0
+"123","surveillance",1
+"124","survSNP",0
+"125","tagcloud",0
+"126","TAM",1
+"127","tbart",1
+"128","termstrc",0
+"129","tmg",0
+"130","transmission",0
+"131","trustOptim",0
+"132","unmarked",0
+"133","VIM",0
+"134","waffect",0
+"135","WideLM",0
+"136","wordcloud",0
+"137","zic",0
More information about the Rcpp-commits
mailing list