[Rcpp-commits] r4584 - testlogs

noreply at r-forge.r-project.org noreply at r-forge.r-project.org
Sun Oct 27 02:00:06 CET 2013


Author: edd
Date: 2013-10-27 02:00:06 +0100 (Sun, 27 Oct 2013)
New Revision: 4584

Added:
   testlogs/Rcpp-Summary-20131026.R
   testlogs/Rcpp-check-20131026-1602.txt
   testlogs/result-20131026-183339.RData
   testlogs/result-20131026-183339.txt
Log:
Rcpp release regression tests on 2013-10-26:  
115 pass, 
30 fail for missing,
1 fails as before for missing x11


Added: testlogs/Rcpp-Summary-20131026.R
===================================================================
--- testlogs/Rcpp-Summary-20131026.R	                        (rev 0)
+++ testlogs/Rcpp-Summary-20131026.R	2013-10-27 01:00:06 UTC (rev 4584)
@@ -0,0 +1,90 @@
+## results here are edited after a second run following manual
+## installation of a number of package missing in the first run
+
+## loads 'res'
+load("~/svn/rcpp/testlogs/result-20131026-183339.RData")
+
+## good <- as.character(subset(res, res==0)[,1])
+## dput(good)
+goodPkg <- c("accelerometry", "acer", "AdaptiveSparsity", "ALKr", "Amelia",
+             "apcluster", "BayesComm", "bcp", "bcpa", "bfa", "bfp", "bifactorial",
+             "blockcluster", "ccaPP", "cda", "cladoRcpp", "clogitL1", "clusteval",
+             "ConConPiWiFun", "coneproj", "Delaporte", "ecp", "EpiContactTrace",
+             "ExactNumCI", "fastGHQuad", "FastPCS", "FastRCS", "FBFsearch",
+             "fdaMixed", "forecast", "gRbase", "gRim", "growcurves", "GSE",
+             "GUTS", "GxM", "HLMdiag", "httpuv", "inarmix", "jaatha", "Kmisc",
+             "lm.br", "maxent", "minqa", "MPTinR", "msgl", "multmod", "mvabund",
+             "MVB", "NetSim", "NetworkAnalysis", "oem", "PedCNV", "phom",
+             "phylobase", "planar", "PReMiuM", "prospectr", "psgp", "Rankcluster",
+             "Rclusterpp", "RcppArmadillo", "RcppBDT", "rcppbugs", "RcppClassic",
+             "RcppClassicExamples", "RcppCNPy", "RcppDE", "RcppEigen", "RcppExamples",
+             "RcppGSL", "RcppOctave", "RcppProgress", "RcppRoll", "RcppSMC",
+             "RcppXts", "RcppZiggurat", "rexpokit", "rforensicbatwing", "rgam",
+             "RInside", "Rmalschains", "RMessenger", "rmgarch", "Rmixmod",
+             "robustgam", "robustHD", "rococo", "rotations", "RProtoBuf",
+             "RQuantLib", "RSNNS", "RSofia", "rugarch", "RVowpalWabbit", "SBSA",
+             "sdcMicro", "sequences", "simFrame", "sparseHessianFD", "sparseLTSEigen",
+             "SpatialTools", "stochvol", "survSNP", "tagcloud", "termstrc",
+             "tmg", "transmission", "trustOptim", "unmarked", "VIM", "waffect",
+             "WideLM", "wordcloud", "zic")
+
+
+## bad <- as.character(subset(res, res==1)[,1])
+## dput(bad)
+badPkg <- c("ALDqr", "CDM", "classify", "climdex.pcic", "disclapmix", "diversitree",
+            "fugeR", "Funclustering", "geiger", "GeneticTools", "gMWT", "GOsummaries",
+            "hsphase", "hypervolume", "KernSmoothIRT", "LaF", "lme4", "marked",
+            "mets", "mirt", "miscF", "ngspatial", "openair", "orQA",
+            "sdcTable", "sirt", "spacodiR", "surveillance", "TAM", "tbart",
+            "VIMGUI")
+
+bad4missing <- c("ALDqr",		# 'HyperbolicDist’
+                 "CDM",			# sirt, TAM
+                 "classify",		# ‘R2WinBUGS’ ‘R2jags’
+		 "climdex.pcic",	# 'PCIct'
+                 "disclapmix",		# disclap
+                 "diversitree",		# ‘deSolve’ ‘subplex’
+                 "fugeR",		# snowfall
+		 "Funclustering",	# fda
+                 "geiger",		# ‘msm’ ‘subplex’ ‘deSolve’ ‘coda’ ‘ncbit’
+                 "GeneticTools",	# ‘gMWT’ ‘snpStats’
+                 "gMWT",		# ‘clinfun’
+                 "GOsummaries",		# ‘gProfileR’ ‘limma’
+                 "hsphase",		# snowfall
+                 "hypervolume",		# raster, maps
+                 "LaF",			# 'yaml'
+                 "lme4",		# MEMSS
+                 "marked",		# ‘optimx’ ‘coda’ ‘R2admb’
+                 "mets",		# ‘lava’ ‘timereg’ ‘prodlim’
+                 "mirt",		# ‘GPArotation’
+                 "miscF",		# ‘MCMCpack’
+                 "ngspatial",		# ‘batchmeans’
+                 "openair",		# ‘latticeExtra’ ‘hexbin’ ‘RgoogleMaps’ ‘png’ ‘mapdata’
+                 "orQA",		# ‘genefilter’
+                 "sdcTable",		# ‘lpSolveAPI’
+                 "sirt",		# ‘pbivnorm’ ‘sfsmisc’
+                 "spacodiR",		# ‘picante’
+                 "surveillance",	# ‘spatstat’
+                 "TAM",			# ‘tensor’ ‘sfsmisc’ ‘GPArotation’ ‘psych’
+                 "tbart",		# ‘GISTools’
+                 "VIMGUI")		# VIM, survey
+
+bad4rcpp <- c()				# Yay!
+
+## these fail initially but can all be run with some extra effort
+bad4notrcpp <-   c("KernSmoothIRT")	# rgl failed, needs full x11 session
+
+good <- length(goodPkg)
+bad  <- length(bad4missing) + length(bad4rcpp) + length(bad4notrcpp)
+stopifnot(all.equal(bad,length(badPkg)))  ## account for GeoBIO
+
+cat("Good       ", good, "\n")
+cat("Bad        ", bad, "\n")
+cat("  RcppErr  ", length(bad4rcpp), "\n")
+cat("  MissDep  ", length(bad4missing), "\n")
+cat("  NotRcpp  ", length(bad4notrcpp), "\n")
+cat("Total      ", good + bad, "\n")
+cat("Error Pct  ", length(bad4rcpp) / (good + bad), "\n")
+
+
+

Added: testlogs/Rcpp-check-20131026-1602.txt
===================================================================
--- testlogs/Rcpp-check-20131026-1602.txt	                        (rev 0)
+++ testlogs/Rcpp-check-20131026-1602.txt	2013-10-27 01:00:06 UTC (rev 4584)
@@ -0,0 +1,344 @@
+Started at  2013-10-26 16:02:56 
+  [1] "accelerometry"       "acer"                "AdaptiveSparsity"   
+  [4] "ALDqr"               "ALKr"                "Amelia"             
+  [7] "apcluster"           "BayesComm"           "bcp"                
+ [10] "bcpa"                "bfa"                 "bfp"                
+ [13] "bifactorial"         "blockcluster"        "ccaPP"              
+ [16] "cda"                 "CDM"                 "cladoRcpp"          
+ [19] "classify"            "climdex.pcic"        "clogitL1"           
+ [22] "clusteval"           "ConConPiWiFun"       "coneproj"           
+ [25] "Delaporte"           "disclapmix"          "diversitree"        
+ [28] "ecp"                 "EpiContactTrace"     "ExactNumCI"         
+ [31] "fastGHQuad"          "FastPCS"             "FastRCS"            
+ [34] "FBFsearch"           "fdaMixed"            "forecast"           
+ [37] "fugeR"               "Funclustering"       "geiger"             
+ [40] "GeneticTools"        "gMWT"                "GOsummaries"        
+ [43] "gRbase"              "gRim"                "growcurves"         
+ [46] "GSE"                 "GUTS"                "GxM"                
+ [49] "HLMdiag"             "hsphase"             "httpuv"             
+ [52] "hypervolume"         "inarmix"             "jaatha"             
+ [55] "KernSmoothIRT"       "Kmisc"               "LaF"                
+ [58] "lm.br"               "lme4"                "marked"             
+ [61] "maxent"              "mets"                "minqa"              
+ [64] "mirt"                "miscF"               "MPTinR"             
+ [67] "msgl"                "multmod"             "mvabund"            
+ [70] "MVB"                 "NetSim"              "NetworkAnalysis"    
+ [73] "ngspatial"           "oem"                 "openair"            
+ [76] "orQA"                "PedCNV"              "phom"               
+ [79] "phylobase"           "planar"              "PReMiuM"            
+ [82] "prospectr"           "psgp"                "Rankcluster"        
+ [85] "Rclusterpp"          "RcppArmadillo"       "RcppBDT"            
+ [88] "rcppbugs"            "RcppClassic"         "RcppClassicExamples"
+ [91] "RcppCNPy"            "RcppDE"              "RcppEigen"          
+ [94] "RcppExamples"        "RcppGSL"             "RcppOctave"         
+ [97] "RcppProgress"        "RcppRoll"            "RcppSMC"            
+[100] "RcppXts"             "RcppZiggurat"        "rexpokit"           
+[103] "rforensicbatwing"    "rgam"                "RInside"            
+[106] "Rmalschains"         "RMessenger"          "rmgarch"            
+[109] "Rmixmod"             "robustgam"           "robustHD"           
+[112] "rococo"              "rotations"           "RProtoBuf"          
+[115] "RQuantLib"           "RSNNS"               "RSofia"             
+[118] "rugarch"             "RVowpalWabbit"       "SBSA"               
+[121] "sdcMicro"            "sdcTable"            "sequences"          
+[124] "simFrame"            "sirt"                "spacodiR"           
+[127] "sparseHessianFD"     "sparseLTSEigen"      "SpatialTools"       
+[130] "stochvol"            "surveillance"        "survSNP"            
+[133] "tagcloud"            "TAM"                 "tbart"              
+[136] "termstrc"            "tmg"                 "transmission"       
+[139] "trustOptim"          "unmarked"            "VIM"                
+[142] "VIMGUI"              "waffect"             "WideLM"             
+[145] "wordcloud"           "zic"                
+0 : accelerometry_2.0.tar.gz 
+0 : acer_0.1.2.tar.gz 
+0 : AdaptiveSparsity_1.2.tar.gz 
+1 : ALDqr_0.2.tar.gz 
+0 : ALKr_0.5.3.tar.gz 
+0 : Amelia_1.7.2.tar.gz 
+0 : apcluster_1.3.2.tar.gz 
+0 : BayesComm_0.1-0.tar.gz 
+0 : bcp_3.0.1.tar.gz 
+0 : bcpa_1.0.tar.gz 
+0 : bfa_0.3.tar.gz 
+0 : bfp_0.0-25.tar.gz 
+0 : bifactorial_1.4.7.tar.gz 
+0 : blockcluster_3.0.tar.gz 
+0 : ccaPP_0.2.0.tar.gz 
+0 : cda_1.3.3.tar.gz 
+1 : CDM_2.4-9.tar.gz 
+0 : cladoRcpp_0.14.2.tar.gz 
+1 : classify_1.1.tar.gz 
+1 : climdex.pcic_0.7-4.tar.gz 
+0 : clogitL1_1.1.tar.gz 
+0 : clusteval_0.1.tar.gz 
+0 : ConConPiWiFun_0.4.1.tar.gz 
+0 : coneproj_1.2.tar.gz 
+0 : Delaporte_1.0-1.tar.gz 
+1 : disclapmix_1.2.tar.gz 
+1 : diversitree_0.9-6.tar.gz 
+0 : ecp_1.5.4.tar.gz 
+0 : EpiContactTrace_0.8.6.tar.gz 
+0 : ExactNumCI_1.0.0.tar.gz 
+0 : fastGHQuad_0.1-1.tar.gz 
+0 : FastPCS_0.0.6.tar.gz 
+0 : FastRCS_0.0.1.tar.gz 
+0 : FBFsearch_1.0.tar.gz 
+0 : fdaMixed_0.2.tar.gz 
+0 : forecast_4.8.tar.gz 
+1 : fugeR_0.1.2.tar.gz 
+1 : Funclustering_1.0.tar.gz 
+1 : geiger_1.99-3.tar.gz 
+1 : GeneticTools_0.2.1.tar.gz 
+1 : gMWT_0.3.tar.gz 
+1 : GOsummaries_1.0.tar.gz 
+0 : gRbase_1.6-12.tar.gz 
+0 : gRim_0.1-17.tar.gz 
+0 : growcurves_0.2.3.5.tar.gz 
+0 : GSE_3.0.tar.gz 
+0 : GUTS_0.2.8.tar.gz 
+0 : GxM_1.0.tar.gz 
+0 : HLMdiag_0.2.3.tar.gz 
+1 : hsphase_1.2.3.tar.gz 
+0 : httpuv_1.2.0.tar.gz 
+1 : hypervolume_0.9.9.tar.gz 
+0 : inarmix_0.2.tar.gz 
+0 : jaatha_2.1.tar.gz 
+1 : KernSmoothIRT_6.0.tar.gz 
+0 : Kmisc_0.4.0-1.tar.gz 
+1 : LaF_0.5.tar.gz 
+0 : lm.br_2.2.tar.gz 
+1 : lme4_1.0-5.tar.gz 
+1 : marked_1.1.2.tar.gz 
+0 : maxent_1.3.3.tar.gz 
+1 : mets_0.2.4.tar.gz 
+0 : minqa_1.2.1.tar.gz 
+1 : mirt_0.9.0.tar.gz 
+1 : miscF_0.1-2.tar.gz 
+0 : MPTinR_1.1.8.tar.gz 
+0 : msgl_0.1.4.tar.gz 
+0 : multmod_1.0.tar.gz 
+0 : mvabund_3.8.0.tar.gz 
+0 : MVB_1.1.tar.gz 
+0 : NetSim_0.9.tar.gz 
+0 : NetworkAnalysis_0.3-1.tar.gz 
+1 : ngspatial_1.0-1.tar.gz 
+0 : oem_1.02.tar.gz 
+1 : openair_0.8-5.tar.gz 
+1 : orQA_0.2.1.tar.gz 
+0 : PedCNV_0.1.tar.gz 
+0 : phom_1.0.2.tar.gz 
+0 : phylobase_0.6.5.2.tar.gz 
+0 : planar_1.2.4.tar.gz 
+0 : PReMiuM_3.0.21.tar.gz 
+0 : prospectr_0.1.tar.gz 
+0 : psgp_0.3-4.tar.gz 
+0 : Rankcluster_0.91.tar.gz 
+0 : Rclusterpp_0.2.2.tar.gz 
+0 : RcppArmadillo_0.3.920.1.tar.gz 
+0 : RcppBDT_0.2.1.tar.gz 
+0 : rcppbugs_0.1.4.tar.gz 
+0 : RcppClassic_0.9.4.tar.gz 
+0 : RcppClassicExamples_0.1.1.tar.gz 
+0 : RcppCNPy_0.2.0.tar.gz 
+0 : RcppDE_0.1.1.tar.gz 
+1 : RcppEigen_0.3.1.2.3.tar.gz 
+0 : RcppExamples_0.1.6.tar.gz 
+0 : RcppGSL_0.2.0.tar.gz 
+0 : RcppOctave_0.11.2.tar.gz 
+0 : RcppProgress_0.1.tar.gz 
+0 : RcppRoll_0.1.0.tar.gz 
+0 : RcppSMC_0.1.1.tar.gz 
+0 : RcppXts_0.0.4.tar.gz 
+0 : RcppZiggurat_0.0.1.tar.gz 
+0 : rexpokit_0.24.1.tar.gz 
+0 : rforensicbatwing_1.1.tar.gz 
+0 : rgam_0.6.1.tar.gz 
+0 : RInside_0.2.10.tar.gz 
+0 : Rmalschains_0.2-1.tar.gz 
+0 : RMessenger_0.1.3.tar.gz 
+0 : rmgarch_1.2-0.tar.gz 
+0 : Rmixmod_1.1.3.tar.gz 
+0 : robustgam_0.1.7.tar.gz 
+0 : robustHD_0.3.2.tar.gz 
+0 : rococo_1.1.0.tar.gz 
+0 : rotations_0.1.tar.gz 
+0 : RProtoBuf_0.3.1.tar.gz 
+0 : RQuantLib_0.3.10.tar.gz 
+0 : RSNNS_0.4-3.tar.gz 
+0 : RSofia_1.1.tar.gz 
+0 : rugarch_1.2-7.tar.gz 
+0 : RVowpalWabbit_0.0.5.tar.gz 
+0 : SBSA_0.2.0.tar.gz 
+0 : sdcMicro_4.0.3.tar.gz 
+1 : sdcTable_0.10.2.tar.gz 
+0 : sequences_0.5.7.tar.gz 
+0 : simFrame_0.5.0.tar.gz 
+1 : sirt_0.38-25.tar.gz 
+1 : spacodiR_0.13.0115.tar.gz 
+0 : sparseHessianFD_0.1.0.tar.gz 
+0 : sparseLTSEigen_0.1.3.tar.gz 
+0 : SpatialTools_0.5.4.tar.gz 
+0 : stochvol_0.7-1.tar.gz 
+1 : surveillance_1.6-0.tar.gz 
+0 : survSNP_0.21-5.tar.gz 
+0 : tagcloud_0.1.tar.gz 
+1 : TAM_0.9-9.tar.gz 
+1 : tbart_0.9.tar.gz 
+0 : termstrc_1.3.5.tar.gz 
+0 : tmg_0.1.tar.gz 
+0 : transmission_0.1.tar.gz 
+0 : trustOptim_0.8.1.tar.gz 
+0 : unmarked_0.10-2.tar.gz 
+0 : VIM_4.0.0.tar.gz 
+1 : VIMGUI_0.9.0.tar.gz 
+0 : waffect_1.2.tar.gz 
+0 : WideLM_0.1-1.tar.gz 
+0 : wordcloud_2.4.tar.gz 
+0 : zic_0.7.5.tar.gz 
+                    pkg res
+1         accelerometry   0
+2                  acer   0
+3      AdaptiveSparsity   0
+4                 ALDqr   1
+5                  ALKr   0
+6                Amelia   0
+7             apcluster   0
+8             BayesComm   0
+9                   bcp   0
+10                 bcpa   0
+11                  bfa   0
+12                  bfp   0
+13          bifactorial   0
+14         blockcluster   0
+15                ccaPP   0
+16                  cda   0
+17                  CDM   1
+18            cladoRcpp   0
+19             classify   1
+20         climdex.pcic   1
+21             clogitL1   0
+22            clusteval   0
+23        ConConPiWiFun   0
+24             coneproj   0
+25            Delaporte   0
+26           disclapmix   1
+27          diversitree   1
+28                  ecp   0
+29      EpiContactTrace   0
+30           ExactNumCI   0
+31           fastGHQuad   0
+32              FastPCS   0
+33              FastRCS   0
+34            FBFsearch   0
+35             fdaMixed   0
+36             forecast   0
+37                fugeR   1
+38        Funclustering   1
+39               geiger   1
+40         GeneticTools   1
+41                 gMWT   1
+42          GOsummaries   1
+43               gRbase   0
+44                 gRim   0
+45           growcurves   0
+46                  GSE   0
+47                 GUTS   0
+48                  GxM   0
+49              HLMdiag   0
+50              hsphase   1
+51               httpuv   0
+52          hypervolume   1
+53              inarmix   0
+54               jaatha   0
+55        KernSmoothIRT   1
+56                Kmisc   0
+57                  LaF   1
+58                lm.br   0
+59                 lme4   1
+60               marked   1
+61               maxent   0
+62                 mets   1
+63                minqa   0
+64                 mirt   1
+65                miscF   1
+66               MPTinR   0
+67                 msgl   0
+68              multmod   0
+69              mvabund   0
+70                  MVB   0
+71               NetSim   0
+72      NetworkAnalysis   0
+73            ngspatial   1
+74                  oem   0
+75              openair   1
+76                 orQA   1
+77               PedCNV   0
+78                 phom   0
+79            phylobase   0
+80               planar   0
+81              PReMiuM   0
+82            prospectr   0
+83                 psgp   0
+84          Rankcluster   0
+85           Rclusterpp   0
+86        RcppArmadillo   0
+87              RcppBDT   0
+88             rcppbugs   0
+89          RcppClassic   0
+90  RcppClassicExamples   0
+91             RcppCNPy   0
+92               RcppDE   0
+93            RcppEigen   1
+94         RcppExamples   0
+95              RcppGSL   0
+96           RcppOctave   0
+97         RcppProgress   0
+98             RcppRoll   0
+99              RcppSMC   0
+100             RcppXts   0
+101        RcppZiggurat   0
+102            rexpokit   0
+103    rforensicbatwing   0
+104                rgam   0
+105             RInside   0
+106         Rmalschains   0
+107          RMessenger   0
+108             rmgarch   0
+109             Rmixmod   0
+110           robustgam   0
+111            robustHD   0
+112              rococo   0
+113           rotations   0
+114           RProtoBuf   0
+115           RQuantLib   0
+116               RSNNS   0
+117              RSofia   0
+118             rugarch   0
+119       RVowpalWabbit   0
+120                SBSA   0
+121            sdcMicro   0
+122            sdcTable   1
+123           sequences   0
+124            simFrame   0
+125                sirt   1
+126            spacodiR   1
+127     sparseHessianFD   0
+128      sparseLTSEigen   0
+129        SpatialTools   0
+130            stochvol   0
+131        surveillance   1
+132             survSNP   0
+133            tagcloud   0
+134                 TAM   1
+135               tbart   1
+136            termstrc   0
+137                 tmg   0
+138        transmission   0
+139          trustOptim   0
+140            unmarked   0
+141                 VIM   0
+142              VIMGUI   1
+143             waffect   0
+144              WideLM   0
+145           wordcloud   0
+146                 zic   0
+Ended at  2013-10-26 18:33:39 

Added: testlogs/result-20131026-183339.RData
===================================================================
(Binary files differ)


Property changes on: testlogs/result-20131026-183339.RData
___________________________________________________________________
Added: svn:mime-type
   + application/octet-stream

Added: testlogs/result-20131026-183339.txt
===================================================================
--- testlogs/result-20131026-183339.txt	                        (rev 0)
+++ testlogs/result-20131026-183339.txt	2013-10-27 01:00:06 UTC (rev 4584)
@@ -0,0 +1,147 @@
+"pkg","res"
+"1","accelerometry",0
+"2","acer",0
+"3","AdaptiveSparsity",0
+"4","ALDqr",1
+"5","ALKr",0
+"6","Amelia",0
+"7","apcluster",0
+"8","BayesComm",0
+"9","bcp",0
+"10","bcpa",0
+"11","bfa",0
+"12","bfp",0
+"13","bifactorial",0
+"14","blockcluster",0
+"15","ccaPP",0
+"16","cda",0
+"17","CDM",1
+"18","cladoRcpp",0
+"19","classify",1
+"20","climdex.pcic",1
+"21","clogitL1",0
+"22","clusteval",0
+"23","ConConPiWiFun",0
+"24","coneproj",0
+"25","Delaporte",0
+"26","disclapmix",1
+"27","diversitree",1
+"28","ecp",0
+"29","EpiContactTrace",0
+"30","ExactNumCI",0
+"31","fastGHQuad",0
+"32","FastPCS",0
+"33","FastRCS",0
+"34","FBFsearch",0
+"35","fdaMixed",0
+"36","forecast",0
+"37","fugeR",1
+"38","Funclustering",1
+"39","geiger",1
+"40","GeneticTools",1
+"41","gMWT",1
+"42","GOsummaries",1
+"43","gRbase",0
+"44","gRim",0
+"45","growcurves",0
+"46","GSE",0
+"47","GUTS",0
+"48","GxM",0
+"49","HLMdiag",0
+"50","hsphase",1
+"51","httpuv",0
+"52","hypervolume",1
+"53","inarmix",0
+"54","jaatha",0
+"55","KernSmoothIRT",1
+"56","Kmisc",0
+"57","LaF",1
+"58","lm.br",0
+"59","lme4",1
+"60","marked",1
+"61","maxent",0
+"62","mets",1
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