[Rcpp-commits] r1970 - in pkg/Rcpp: . inst/include/Rcpp/stats

[noreply at r-forge.r-project.org]

Author: romain
Date: 2010-08-10 10:55:32 +0200 (Tue, 10 Aug 2010)
New Revision: 1970

Added:
   pkg/Rcpp/inst/include/Rcpp/stats/hyper.h
Modified:
   pkg/Rcpp/TODO
   pkg/Rcpp/inst/include/Rcpp/stats/stats.h
Log:
hyper

Modified: pkg/Rcpp/TODO
===================================================================
--- pkg/Rcpp/TODO	2010-08-10 08:52:02 UTC (rev 1969)
+++ pkg/Rcpp/TODO	2010-08-10 08:55:32 UTC (rev 1970)
@@ -68,7 +68,7 @@
     o	other statistical distribution functions : 
     	nchisq, nbinom, nbinom_mu, nbeta, nf, nt,
     	multinom, 
-    	hyper, tukey, wilcox, signrank
+    	tukey, wilcox, signrank
     
     o	sum : deal with missing values
 

Added: pkg/Rcpp/inst/include/Rcpp/stats/hyper.h
===================================================================
--- pkg/Rcpp/inst/include/Rcpp/stats/hyper.h	                        (rev 0)
+++ pkg/Rcpp/inst/include/Rcpp/stats/hyper.h	2010-08-10 08:55:32 UTC (rev 1970)
@@ -0,0 +1,118 @@
+
+// -*- mode: C++; c-indent-level: 4; c-basic-offset: 4; tab-width: 4 -*-
+//
+// auto generated file (from script/stats.R) 
+//
+// hyper.h: Rcpp R/C++ interface class library -- 
+//
+// Copyright (C) 2010 Douglas Bates, Dirk Eddelbuettel and Romain Francois
+//
+// This file is part of Rcpp.
+//
+// Rcpp is free software: you can redistribute it and/or modify it
+// under the terms of the GNU General Public License as published by
+// the Free Software Foundation, either version 2 of the License, or
+// (at your option) any later version.
+//
+// Rcpp is distributed in the hope that it will be useful, but
+// WITHOUT ANY WARRANTY; without even the implied warranty of
+// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+// GNU General Public License for more details.
+//
+// You should have received a copy of the GNU General Public License
+// along with Rcpp.  If not, see <http://www.gnu.org/licenses/>.
+
+#ifndef Rcpp__stats__hyper_h
+#define Rcpp__stats__hyper_h
+
+namespace Rcpp {
+namespace stats {
+namespace impl {
+
+	template <bool NA, typename T>
+	class DHyper : public Rcpp::VectorBase< REALSXP, NA, DHyper<NA,T> >{
+	public:
+		typedef typename Rcpp::VectorBase<REALSXP,NA,T> VEC_TYPE;
+	
+		DHyper( const VEC_TYPE& vec_, double mm_, double nn_, double kk_ , bool log_ = false ) : 
+			vec(vec_), mm(mm_), nn(nn_), kk(kk_) , log(log_) {}
+		
+		inline double operator[]( int i) const {
+			return ::dhyper( vec[i], mm, nn, kk , log );
+		}
+		
+		inline int size() const { return vec.size(); }
+		
+	private:
+		const VEC_TYPE& vec;
+		double mm; double nn; double kk; 
+		int log;
+	
+	};
+
+	template <bool NA, typename T>
+	class PHyper : public Rcpp::VectorBase< REALSXP, NA, PHyper<NA,T> >{
+	public:
+		typedef typename Rcpp::VectorBase<REALSXP,NA,T> VEC_TYPE;
+	
+		PHyper( const VEC_TYPE& vec_, double mm_, double nn_, double kk_ ,
+			   bool lower_tail = true, bool log_ = false ) : 
+			vec(vec_), mm(mm_), nn(nn_), kk(kk_) , lower(lower_tail), log(log_) {}
+		
+		inline double operator[]( int i) const {
+			return ::phyper( vec[i], mm, nn, kk, lower, log );
+		}
+		
+		inline int size() const { return vec.size(); }
+		
+	private:
+		const VEC_TYPE& vec;
+		double mm; double nn; double kk; 
+		int lower, log;
+	
+	};
+
+	template <bool NA, typename T>
+	class QHyper : public Rcpp::VectorBase< REALSXP, NA, QHyper<NA,T> >{
+	public:
+		typedef typename Rcpp::VectorBase<REALSXP,NA,T> VEC_TYPE;
+	
+		QHyper( const VEC_TYPE& vec_, double mm_, double nn_, double kk_ ,
+			   bool lower_tail = true, bool log_ = false ) : 
+			vec(vec_), mm(mm_), nn(nn_), kk(kk_), lower(lower_tail), log(log_) {}
+		
+		inline double operator[]( int i) const {
+			return ::qhyper( vec[i], mm, nn, kk, lower, log );
+		}
+		
+		inline int size() const { return vec.size(); }
+		
+	private:
+		const VEC_TYPE& vec;
+		double mm; double nn; double kk; 
+		int lower, log;
+	
+	};
+	
+} // impl
+
+template <bool NA, typename T>
+inline impl::DHyper<NA,T> dhyper( const Rcpp::VectorBase<REALSXP,NA,T>& x, double mm_, double nn_, double kk_, bool log = false ) {
+	return impl::DHyper<NA,T>( x, mm_, nn_, kk_, log ); 
+}
+
+template <bool NA, typename T>
+inline impl::PHyper<NA,T> phyper( const Rcpp::VectorBase<REALSXP,NA,T>& x, double mm_, double nn_, double kk_, bool lower = true, bool log = false ) {
+	return impl::PHyper<NA,T>( x, mm_, nn_, kk_, lower, log ); 
+}
+
+template <bool NA, typename T>
+inline impl::QHyper<NA,T> qhyper( const Rcpp::VectorBase<REALSXP,NA,T>& x, double mm_, double nn_, double kk_, bool lower = true, bool log = false ) {
+	return impl::QHyper<NA,T>( x, mm_, nn_, kk_, lower, log ); 
+}
+	
+}
+}
+
+#endif
+

Modified: pkg/Rcpp/inst/include/Rcpp/stats/stats.h
===================================================================
--- pkg/Rcpp/inst/include/Rcpp/stats/stats.h	2010-08-10 08:52:02 UTC (rev 1969)
+++ pkg/Rcpp/inst/include/Rcpp/stats/stats.h	2010-08-10 08:55:32 UTC (rev 1970)
@@ -37,6 +37,7 @@
 #include <Rcpp/stats/exp.h>
 #include <Rcpp/stats/cauchy.h>
 #include <Rcpp/stats/geom.h>
+#include <Rcpp/stats/hyper.h>
 
 #include <Rcpp/stats/binom.h>
 #include <Rcpp/stats/pois.h>