[Rcpp-commits] r1951 - pkg/Rcpp pkg/Rcpp/inst/include/Rcpp/stats scripts
noreply at r-forge.r-project.org
noreply at r-forge.r-project.org
Mon Aug 9 08:22:22 CEST 2010
Author: romain
Date: 2010-08-09 08:22:21 +0200 (Mon, 09 Aug 2010)
New Revision: 1951
Added:
pkg/Rcpp/inst/include/Rcpp/stats/lnorm.h
Modified:
pkg/Rcpp/NEWS
pkg/Rcpp/TODO
pkg/Rcpp/inst/include/Rcpp/stats/stats.h
scripts/stats.R
Log:
(dpq)lnorm (no tests yet)
Modified: pkg/Rcpp/NEWS
===================================================================
--- pkg/Rcpp/NEWS 2010-08-06 17:04:49 UTC (rev 1950)
+++ pkg/Rcpp/NEWS 2010-08-09 06:22:21 UTC (rev 1951)
@@ -1,6 +1,6 @@
0.8.6 (future)
- o new sugar functions (dpq)(unif|norm|gamma|chisq|pois|binom|t|beta)
+ o new sugar functions (dpq)(unif|norm|gamma|chisq|lnorm|pois|binom|t|beta)
o new vignette Rcpp-quickref : quick reference guide of Rcpp API
Modified: pkg/Rcpp/TODO
===================================================================
--- pkg/Rcpp/TODO 2010-08-06 17:04:49 UTC (rev 1950)
+++ pkg/Rcpp/TODO 2010-08-09 06:22:21 UTC (rev 1951)
@@ -65,7 +65,7 @@
o Compound operators: ++,--,+=, -=, ...
- o other statistical distribution functions : lnorm, nchisq, f,
+ o other statistical distribution functions : nchisq, f,
multinom, cauchy, exp, geom, hyper, nbinom, nbinom_mu, weibull,
logis, nbeta, nf, nt, tukey, wilcox, signrank
Added: pkg/Rcpp/inst/include/Rcpp/stats/lnorm.h
===================================================================
--- pkg/Rcpp/inst/include/Rcpp/stats/lnorm.h (rev 0)
+++ pkg/Rcpp/inst/include/Rcpp/stats/lnorm.h 2010-08-09 06:22:21 UTC (rev 1951)
@@ -0,0 +1,118 @@
+
+// -*- mode: C++; c-indent-level: 4; c-basic-offset: 4; tab-width: 4 -*-
+//
+// auto generated file (from script/stats.R)
+//
+// lnorm.h: Rcpp R/C++ interface class library --
+//
+// Copyright (C) 2010 Douglas Bates, Dirk Eddelbuettel and Romain Francois
+//
+// This file is part of Rcpp.
+//
+// Rcpp is free software: you can redistribute it and/or modify it
+// under the terms of the GNU General Public License as published by
+// the Free Software Foundation, either version 2 of the License, or
+// (at your option) any later version.
+//
+// Rcpp is distributed in the hope that it will be useful, but
+// WITHOUT ANY WARRANTY; without even the implied warranty of
+// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+// GNU General Public License for more details.
+//
+// You should have received a copy of the GNU General Public License
+// along with Rcpp. If not, see <http://www.gnu.org/licenses/>.
+
+#ifndef Rcpp__stats__lnorm_h
+#define Rcpp__stats__lnorm_h
+
+namespace Rcpp {
+namespace stats {
+namespace impl {
+
+ template <bool NA, typename T>
+ class DLnorm : public Rcpp::VectorBase< REALSXP, NA, DLnorm<NA,T> >{
+ public:
+ typedef typename Rcpp::VectorBase<REALSXP,NA,T> VEC_TYPE;
+
+ DLnorm( const VEC_TYPE& vec_, double meanlog_ = 0.0, double sdlog_ = 1.0 , bool log_ = false ) :
+ vec(vec_), meanlog(meanlog_), sdlog(sdlog_) , log(log_) {}
+
+ inline double operator[]( int i) const {
+ return ::dlnorm( vec[i], meanlog, sdlog , log );
+ }
+
+ inline int size() const { return vec.size(); }
+
+ private:
+ const VEC_TYPE& vec;
+ double meanlog; double sdlog;
+ int log;
+
+ };
+
+ template <bool NA, typename T>
+ class PLnorm : public Rcpp::VectorBase< REALSXP, NA, PLnorm<NA,T> >{
+ public:
+ typedef typename Rcpp::VectorBase<REALSXP,NA,T> VEC_TYPE;
+
+ PLnorm( const VEC_TYPE& vec_, double meanlog_ = 0.0, double sdlog_ = 1.0 ,
+ bool lower_tail = true, bool log_ = false ) :
+ vec(vec_), meanlog(meanlog_), sdlog(sdlog_) , lower(lower_tail), log(log_) {}
+
+ inline double operator[]( int i) const {
+ return ::plnorm( vec[i], meanlog, sdlog, lower, log );
+ }
+
+ inline int size() const { return vec.size(); }
+
+ private:
+ const VEC_TYPE& vec;
+ double meanlog; double sdlog;
+ int lower, log;
+
+ };
+
+ template <bool NA, typename T>
+ class QLnorm : public Rcpp::VectorBase< REALSXP, NA, QLnorm<NA,T> >{
+ public:
+ typedef typename Rcpp::VectorBase<REALSXP,NA,T> VEC_TYPE;
+
+ QLnorm( const VEC_TYPE& vec_, double meanlog_ = 0.0, double sdlog_ = 1.0 ,
+ bool lower_tail = true, bool log_ = false ) :
+ vec(vec_), meanlog(meanlog_), sdlog(sdlog_), lower(lower_tail), log(log_) {}
+
+ inline double operator[]( int i) const {
+ return ::qlnorm( vec[i], meanlog, sdlog, lower, log );
+ }
+
+ inline int size() const { return vec.size(); }
+
+ private:
+ const VEC_TYPE& vec;
+ double meanlog; double sdlog;
+ int lower, log;
+
+ };
+
+} // impl
+
+template <bool NA, typename T>
+inline impl::DLnorm<NA,T> dlnorm( const Rcpp::VectorBase<REALSXP,NA,T>& x, double meanlog_ = 0.0, double sdlog_ = 1.0, bool log = false ) {
+ return impl::DLnorm<NA,T>( x, meanlog_, sdlog_, log );
+}
+
+template <bool NA, typename T>
+inline impl::PLnorm<NA,T> plnorm( const Rcpp::VectorBase<REALSXP,NA,T>& x, double meanlog_ = 0.0, double sdlog_ = 1.0, bool lower = true, bool log = false ) {
+ return impl::PLnorm<NA,T>( x, meanlog_, sdlog_, lower, log );
+}
+
+template <bool NA, typename T>
+inline impl::QLnorm<NA,T> qlnorm( const Rcpp::VectorBase<REALSXP,NA,T>& x, double meanlog_ = 0.0, double sdlog_ = 1.0, bool lower = true, bool log = false ) {
+ return impl::QLnorm<NA,T>( x, meanlog_, sdlog_, lower, log );
+}
+
+}
+}
+
+#endif
+
Modified: pkg/Rcpp/inst/include/Rcpp/stats/stats.h
===================================================================
--- pkg/Rcpp/inst/include/Rcpp/stats/stats.h 2010-08-06 17:04:49 UTC (rev 1950)
+++ pkg/Rcpp/inst/include/Rcpp/stats/stats.h 2010-08-09 06:22:21 UTC (rev 1951)
@@ -28,6 +28,7 @@
#include <Rcpp/stats/chisq.h>
#include <Rcpp/stats/beta.h>
#include <Rcpp/stats/t.h>
+#include <Rcpp/stats/lnorm.h>
#include <Rcpp/stats/binom.h>
#include <Rcpp/stats/pois.h>
Modified: scripts/stats.R
===================================================================
--- scripts/stats.R 2010-08-06 17:04:49 UTC (rev 1950)
+++ scripts/stats.R 2010-08-09 06:22:21 UTC (rev 1951)
@@ -167,5 +167,18 @@
# "min" = list( type = "double", default = "0.0" ),
# "max" = list( type = "double", default = "1.0" )
# ) )
+#
+# cook( "gamma", params = list(
+# "shape" = list( type = "double" ),
+# "scale" = list( type = "double", default = "1.0" )
+# ) )
+#
+# cook( "chisq", params = list(
+# "df" = list( type = "double" )
+# ) )
-
+cook( "lnorm", params = list(
+ "meanlog" = list( type = "double", default = "0.0" ),
+ "sdlog" = list( type = "double", default = "1.0" )
+ ) )
+
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