[Rcolony-commits] r78 - in pkg: . man

[noreply at r-forge.r-project.org]

Author: jonesor
Date: 2012-11-26 15:58:59 +0100 (Mon, 26 Nov 2012)
New Revision: 78

Modified:
   pkg/DESCRIPTION
   pkg/man/rcolony-package.Rd
   pkg/man/run.colony.Rd
Log:
changed maintainer's email address, added note about changing permissions to get Colony2 to run

Modified: pkg/DESCRIPTION
===================================================================
--- pkg/DESCRIPTION	2012-11-22 18:52:09 UTC (rev 77)
+++ pkg/DESCRIPTION	2012-11-26 14:58:59 UTC (rev 78)
@@ -1,10 +1,10 @@
 Package: rcolony
 Type: Package
 Title: Tools for implementation and visualisation of Colony and its outputs.
-Version: 0.2
+Version: 1.2
 Date: 2012-11-16
 Author: Owen R. Jones
-Maintainer: Owen R. Jones <owen.jones at ioz.ac.uk>
+Maintainer: Owen R. Jones <jones at demogr.mpg.de>
 Description: The RColony package provides tools for the implementation of the Colony pedigree analysis software. In addition it provides tools for visualising, and summarising the results of the Colony analyses.
 License: GNU General Public License (GPL)
 LazyLoad: yes

Modified: pkg/man/rcolony-package.Rd
===================================================================
--- pkg/man/rcolony-package.Rd	2012-11-22 18:52:09 UTC (rev 77)
+++ pkg/man/rcolony-package.Rd	2012-11-26 14:58:59 UTC (rev 78)
@@ -13,8 +13,8 @@
 \tabular{ll}{
 Package: \tab rcolony\cr
 Type: \tab Package\cr
-Version: \tab 1.0\cr
-Date: \tab 2009-04-16\cr
+Version: \tab 1.2\cr
+Date: \tab 2012-11-16\cr
 License: \tab GNU GPL\cr
 }
 
@@ -22,10 +22,10 @@
 \author{
 Owen R. Jones
 
-Maintainer: Owen R. Jones <owen.jones at ioz.ac.uk>
+Maintainer: Owen R. Jones <jones at demogr.mpg.de>
 }
 \references{
-Wang, J. (2004) Sibship reconstruction from genetic data with typing errors.  Genetics 166: 1963-1979.\\
+Wang, J. (2004) Sibship reconstruction from genetic data with typing errors.  Genetics 166: 1963-1979.
 
 }
 

Modified: pkg/man/run.colony.Rd
===================================================================
--- pkg/man/run.colony.Rd	2012-11-22 18:52:09 UTC (rev 77)
+++ pkg/man/run.colony.Rd	2012-11-26 14:58:59 UTC (rev 78)
@@ -18,6 +18,8 @@
 You can then use \code{\link{monitor.colony}} to examine this file, and plot the outputs as Colony2 runs. There is a danger that, with very long runtimes, that the temporary file (temp.txt) will grow very large.
 \code{\link{monitor.colony}} fixes this by periodically deleting all but the last few lines of the file. Therefore, if you intend to monitor a long running process it is recommended that you periodically, or continuously run \code{\link{monitor.colony}}.
 
+Note that you will probably need to change the permissions of the Colony executable. On an Apple Macintosh, you can do this by navigating to the directory containing the executable and typing \code{chmod u+x Colony2}.
+
 }
 \value{