[R-gregmisc-commits] r2191 - in pkg/gtools: . inst

noreply at r-forge.r-project.org noreply at r-forge.r-project.org
Thu Jun 21 19:09:49 CEST 2018


Author: warnes
Date: 2018-06-21 19:09:49 +0200 (Thu, 21 Jun 2018)
New Revision: 2191

Added:
   pkg/gtools/.Rbuildignore
   pkg/gtools/ChangeLog
   pkg/gtools/NEWS
Removed:
   pkg/gtools/inst/ChangeLog
   pkg/gtools/inst/NEWS
Log:
Move NEWS and ChangeLog to top level directory

Added: pkg/gtools/.Rbuildignore
===================================================================
--- pkg/gtools/.Rbuildignore	                        (rev 0)
+++ pkg/gtools/.Rbuildignore	2018-06-21 17:09:49 UTC (rev 2191)
@@ -0,0 +1,3 @@
+^revdep
+^.*\.Rproj$
+^\.Rproj\.user$

Copied: pkg/gtools/ChangeLog (from rev 2190, pkg/gtools/inst/ChangeLog)
===================================================================
--- pkg/gtools/ChangeLog	                        (rev 0)
+++ pkg/gtools/ChangeLog	2018-06-21 17:09:49 UTC (rev 2191)
@@ -0,0 +1,1059 @@
+2017-06-14  warnes
+
+	* [r2169] DESCRIPTION, NAMESPACE, R/checkRVersion.R,
+	  R/newVersionAvailable.R, R/roman2int.R, R/setTCPNoDelay.R,
+	  man/combinations.Rd, man/defmacro.Rd, src/gtools.h[ADD],
+	  src/gtools_load.c[ADD], src/setTCPNoDelay.c,
+	  tests/test_setTCPNoDelay.R: Explicitly register C routines used
+	  by gtools
+
+2017-06-13  warnes
+
+	* [r2168] man/combinations.Rd, man/defmacro.Rd: Update R News URLS
+
+2017-06-12  warnes
+
+	* [r2165] man/capwords.Rd: Update link for taxise::taxize_capwords
+	  in gtools::capwords man page
+
+	* [r2164] inst/ChangeLog: Fix typos
+
+	* [r2163] man/capwords.Rd: Update link for taxise::taxize_capwords
+	  in gtools::capwords man page
+
+	* [r2162] DESCRIPTION, NAMESPACE, inst/ChangeLog, inst/NEWS: Update
+	  meta files for gtools 3.7.0
+
+	* [r2161] tests/smartbind_emptynames.R: Fix test for smartbind with
+	  empty column names
+
+	* [r2160] man/setTCPNoDelay.Rd, tests/test_setTCPNoDelay.R: Add
+	  improved example to man page for setTCPnoDelat() and fix test
+	  function.
+
+	* [r2159] man/ask.Rd: Add 'con' argument to ask() to allow
+	  specification of the connection to query for input.
+
+	* [r2158] R/capwords.R, man/capwords.Rd: Add capwords() function to
+	  apply standard capitalization rules to a scharacter string.
+
+2017-05-23  warnes
+
+	* [r2145] R/ask.R, R/quantcut.R, R/smartbind.R: - Integrate changes
+	  made by Mango Solutions at
+	  https://github.com/MangoTheCat/SASxport. - Remove functions
+	  duplicated from the Hmisc package. - Minor code cleanup.
+
+2016-08-24  warnes
+
+	* [r2144] tests/test_setTCPNoDelay.R: Add more testing code.
+
+2016-08-15  warnes
+
+	* [r2143] inst/ChangeLog: Update ChangeLog
+
+	* [r2142] DESCRIPTION: Update version number and date
+
+	* [r2141] tests/test_setTCPNoDelay.R[ADD]: Add test code for
+	  setTCPNoDelay
+
+	* [r2140] R/setTCPNoDelay.R: Modify setTCPNoDelay to work with
+	  current socket objects
+
+	* [r2139] src/setTCPNoDelay.c: checkStatus() was not correctly
+	  getting the error message.
+
+2016-04-22  warnes
+
+	* [r2127] NAMESPACE, R/capwords.R[ADD], man/capwords.Rd[ADD]: Add
+	  capwords() function to properly capatilize strings for use in
+	  titles
+
+	* [r2126] R/na.replace.R, man/na.replace.Rd: na.replace() now
+	  accepts a function providing the replcement value.
+
+2015-11-24  warnes
+
+	* [r2071] R/smartbind.R: Correct error when column types don't
+	  match (reported by
+
+2015-10-15  warnes
+
+	* [r2069] R/smartbind.R: smartbind() was not properly handling
+	  columsn that were numeric on one df and character in the other
+	  and other similar ctype conflicts. Fixed.
+
+2015-08-08  warnes
+
+	* [r2067] tests/smartbind_emptynames.R[ADD]: Add half-hearted test
+	  file
+
+	* [r2066] R/smartbind.R: - Improve assignment of default names in
+	  smartbind. - Disambiguate 'list' into an object named 'list' and
+	  the function base::list() in smartbind().
+
+	* [r2065] DESCRIPTION, man/smartbind.Rd: Add example of using
+	  'list' argument to smartbind() man page.
+
+	* [r2064] R/smartbind.R, man/smartbind.Rd: - smartbind() gets a new
+	  argument 'list' to pass a list of data frames, instead of/in
+	  addition to data frames as arguments. - Fix bug in smartbind's
+	  handling of factor levels.
+
+2015-07-14  warnes
+
+	* [r2057] R/loadedPackages.R, man/loadedPackages.Rd: Modify
+	  loadedPackages() to return data silently so that the results
+	  don't get printed twice.
+
+2015-05-27  warnes
+
+	* [r2049] data/badDend.rda[ADD], man/badDend.Rd[ADD],
+	  man/unByteCode.Rd: Create local dataset to use in the example
+	  code for unByteCode instead of relying on web access.
+
+	* [r2048] R/trimws.R: Fix missing closing paren.
+
+	* [r2047] R/keywords.R, R/roman2int.R, R/trim.R[DEL],
+	  R/trimws.R[ADD]: Two functions in gtools need to use either
+	  gdata::trim() or base::trimws() (added in R 3.2.0). The previous
+	  solution was to include gdata/R/gdata/R/trim.R in gtools using a
+	  symbolic link.
+	  
+	  Unfortunately, Rforge doesn't seem to like the symbolic link when
+	  building packages, and generates an error.
+	  
+	  So, instead, create the file trimws.R, which creates trimws() if
+	  it isn't already available (e.g. via base::trimws), and modify
+	  keywords() and roman2int() to use trimws() instead of
+	  gdata::trim().
+
+	* [r2046] man/roman2int.Rd[ADD]: Add man page for roman2int().
+
+	* [r2045] man/mixedsort.Rd: Remove extraneous closing paren.
+
+	* [r2044] NAMESPACE: Add roman2int() to exported function list.
+
+	* [r2043] R/asc.R: Looks like we also lost the change of argument
+	  name to chr(). Fixed.
+
+	* [r2042] R/asc.R: Somehow lost 'simplify=TRUE' argument to asc.
+	  Fixed.
+
+	* [r2041] DESCRIPTION: Update gtools version number to 3.5.0
+
+	* [r2040] DESCRIPTION, inst/ChangeLog, inst/NEWS: Update
+	  DESCRIPTION, ChangeLog, NEWS
+
+	* [r2039] R/mixedsort.R, man/mixedsort.Rd: Add roman numeral
+	  support to mixedorder() and mixedsort().
+
+	* [r2037] man/asc.Rd[ADD]: Add asc() and chr() functions for
+	  converting between characters and ASCII codes
+
+	* [r2036] R/roman2int.R: roman2int() now returns NA for invalid
+	  roman numeral strings instead of generating an error.
+
+	* [r2035] NAMESPACE: Add asc(), chr(), assignEdgewise(),
+	  unByteCode(), and unByteCodeAssign() to package NAMESPACE.
+
+	* [r2034] R/asc.R[ADD]: Add asc() and chr() functions for
+	  converting between characters and ASCII codes
+
+2015-05-26  warnes
+
+	* [r2030] inst/ChangeLog[ADD]: Add changelog to svn repository
+
+2015-05-25  warnes
+
+	* [r2029] tests/test_ddirichlet.R: Add library call.
+
+	* [r2028] man/unByteCode.Rd: Fix typo and add documentation for
+	  argument 'name'.
+
+	* [r2027] man/mixedsort.Rd: Fix typo.
+
+	* [r2026] man/mixedsort.Rd: Add description of blanklast argument,
+	  fix typo.
+
+	* [r2025] man/quantcut.Rd: Change usage to match actual definition.
+
+	* [r2024] man/mixedsort.Rd: Note characters sorting ignores case.
+
+	* [r2023] man/mixedsort.Rd: Remove '...' from arglist to match
+	  source code.
+
+	* [r2022] man/mixedsort.Rd: Replace unicode quotes with \code{..}.
+
+2015-05-23  warnes
+
+	* [r2021] tests/test_ddirichlet.R[ADD]: Add regression test
+	  ddirichlet() bug for x[i]=0, alpha[i]=1: ddirichlet(x, alpha) was
+	  returning NA rather than 0.
+
+	* [r2020] R/dirichlet.R: ddirichlet() was incorrectly returning NA
+	  when x[i]=0 and alpha[i]=1. In this case, the one calculation
+	  became (-Inf * 0), which R evaluates to NaN. The correction is to
+	  detect this case and substitute -Inf instead of NaN.
+
+2015-05-08  warnes
+
+	* [r2019] R/mixedsort.R: Summary: Speed up mixedorder by moving
+	  suppressWarnings outside of lapply loops. (Suggestion by Henrik
+	  Bengtsson.)
+
+2015-05-02  warnes
+
+	* [r2018] Rename 'trunk' to 'pkg' for compatibility with R-forge
+
+	* [r2017] Minor layout change.
+
+	* [r2016] Remove stray 'svn' that was inserted into the code.
+
+	* [r2015] Add man page for unByteCode(), assignEdgeWise(), and
+	  unByteCodeAssign()
+
+2015-04-28  warnes
+
+	* [r1976] Changes to mixedsort(): - Hands off objects that are not
+	  character vectors to the default sort. - Add 'decreasing',
+	  'na.last', and 'blank.last' arguments.
+
+	* [r1975] Add private function 'checkReverseDependencies'.
+
+2015-04-23  warnes
+
+	* [r1950] Update NEWS and ChangeLog
+
+	* [r1949] - The 'q' argument to quantcut()'s 'q' now accept an
+	  integer indicating the number of equally spaced quantile groups
+	  to create. (Suggestion and patch submitted by Ryan C. Thompson.)
+
+	* [r1946] Revers accidental text deletion:
+
+	* [r1945] Update for gtools 3.4.3
+
+	* [r1944] Remove debugging code and stray browser() call
+
+2015-04-14  warnes
+
+	* [r1923] Fix typo
+
+2015-04-09  warnes
+
+	* [r1921] Update gtools ChangeLog
+
+	* [r1920] Move first()/last()/left()/right() to gdata. Add new
+	  functions na.replace() and loadedPackages(). Add more text to
+	  package description.
+
+2015-04-08  warnes
+
+	* [r1919] Move first/last/left/right to from gtools to gdata
+
+2015-04-06  warnes
+
+	* [r1918] Correct URL
+
+	* [r1917] Update NEWS and ChangeLog for gtools 3.5.0
+
+	* [r1916] Add ChangeLog files to repository
+
+	* [r1915] Implement fix to keywords() needed for R-3.4.1, as
+	  suggested by Kurt Hornik.
+
+	* [r1914] - Export S3 methods for first(), last(), left() and
+	  right(). - Ensure code matches man page for first(), last(),
+	  left(), and right().
+
+2014-10-09  warnes
+
+	* [r1897] Update for 3.5.0 release of gtools
+
+	* [r1896] Make right() and left() S3 methods for classes data.frame
+	  and matrix
+
+2014-08-27  warnes
+
+	* [r1872] Fix man page
+
+	* [r1871] Finish adding first(), last(), left(), and right().
+
+	* [r1870] Add functions first(), last(), left(), and right().
+
+2014-05-28  warnes
+
+	* [r1816] Update for gtools 3.4.1
+
+	* [r1815] Add test to ensure smartbind() properly handles Date
+	  columns.
+
+	* [r1814] smartbind: Convert non-native type columns (except
+	  factor) to character.
+
+2014-04-18  arnima
+
+	* [r1813] Main arg is 'x' like showNonASCII(x), preformatted notes
+	  instead of verb
+
+2014-04-17  warnes
+
+	* [r1810] Update ASCIIfy man page to match source code and add
+	  keywords
+
+	* [r1809] Update NEWS for gtools 3.4.0
+
+	* [r1808] Add ASCIIfy function posted to RDevel by Arni Magnusson
+
+2014-03-01  warnes
+
+	* [r1776] Fix cut-and-paste error.
+
+	* [r1775] Update files for gtools 3.3.1 release
+
+	* [r1774] Fix bug in gtools::mixedorder regular expression for
+	  regognizing numbers. (Periods weren't escaped).
+
+2014-02-11  warnes
+
+	* [r1773] Create and use locate copy of tools:::.split_op_version.
+
+	* [r1772] Update for gtools 3.3.0.
+
+	* [r1771] Fix arguments
+
+	* [r1770] Update arguments to match code.
+
+	* [r1769] Add getDependencies() function to return a list of
+	  package dependencies.
+
+2014-01-14  warnes
+
+	* [r1768] Update for bug-fix release
+
+	* [r1767] Add test file for binsearch() function.
+
+	* [r1766] Fixed bug where binsearch() returned the wrong endpoint &
+	  value when the found value was at the upper endpoint.
+
+2014-01-13  warnes
+
+	* [r1765] Fix typo
+
+2014-01-11  warnes
+
+	* [r1764] Update for gtools release 3.2.0
+
+	* [r1763] fixes for R CMD check
+
+	* [r1762] Fixes for gtools release 3.2.0
+
+2013-12-23  warnes
+
+	* [r1761] Extend the keywords() function to return keywords
+	  associated with a specified topic via 'keywords(topic)'.
+
+	* [r1760] Add keyword.
+
+	* [r1759] Add stars.pval() function to convert p-values into
+	  significance symbols.
+
+2013-11-26  warnes
+
+	* [r1748] mixedorder() was failing to correctly handle numbers
+	  including decimals due to a faulty regular expression. Prior to
+	  the fix:
+	  
+	  > drr [1] "Dose 0.3 mg" "Dose 0.04 mg" "Dose 0.5 mg" >
+	  gtools::mixedsort(drr) [1] "Dose 0.3 mg" "Dose 0.04 mg" "Dose 0.5
+	  mg" After the fix:
+	  
+	  > drr [1] "Dose 0.3 mg" "Dose 0.04 mg" "Dose 0.5 mg" >
+	  mixedsort(drr) [1] "Dose 0.04 mg" "Dose 0.3 mg" "Dose 0.5 mg"
+	  
+	  In addition, an optimization was added that checked if the input
+	  vector was numeric. If so, simply use the existing base::order
+	  function.
+
+2013-11-18  warnes
+
+	* [r1747] Use ".Deprecated" instead of warning.
+
+2013-11-06  warnes
+
+	* [r1746] Update files for gtools 3.1.1
+
+	* [r1745] Fix problem with mixedorder/mixedsort when there is only
+	  zero or one elements in the vector.
+
+2013-09-23  warnes
+
+	* [r1716] Comment out empty sections in gtools-deprecated.Rd
+
+	* [r1715] Update files for gtools 3.1.0 release
+
+	* [r1714] Make 'addLast()' defunct.
+
+	* [r1713] Mark 'addLast()' as defunct and move 'lastAdd()' function
+	  to a separate file.
+
+	* [r1712] Update for gtools 3.0.1 release
+
+	* [r1711] Use 'suppressWarnings() instead of 'options(warn=-1)' in
+	  'mixedorder()'.
+
+2013-07-07  warnes
+
+	* [r1705] Fix typo.
+
+2013-07-06  warnes
+
+	* [r1704] Fix Rd warning.
+
+	* [r1703] Include lastAdd in NAMESPACE
+
+	* [r1702] Change assert from deprecated to defunct.
+
+	* [r1701] Improve deprecation message
+
+	* [r1700] Update for gtools 3.0.0
+
+	* [r1699] Create new function lastAdd to replace addLast and mark
+	  addLast as deprecated.
+
+2013-07-05  warnes
+
+	* [r1698] Point out that addLast() modifies the value of .Last in
+	  the global environment.
+
+	* [r1697] Point out that addLast() modifies the value of .Last in
+	  the global environment.
+
+	* [r1696] Update for gtools 2.7.2 mark 2
+
+	* [r1695] Remove cross-reference to (obsolete?) moc package
+
+	* [r1694] Update for gtools 2.7.2
+
+	* [r1693] Update for R version 3.0.0 and later
+
+2013-03-17  warnes
+
+	* [r1640] Fix error in smartbind: factor levels were not being
+	  handled if the factor column was not present in the first data
+	  frame.
+
+2012-06-19  warnes
+
+	* [r1570] Update for gtools 2.7.0.
+
+	* [r1569] Document new 'verbose' argument to smartbind().
+
+	* [r1568] Clean up R CMD check warnings.
+
+2012-05-04  warnes
+
+	* [r1529] smartbind(): Improve handling of factors and ordered
+	  factors.
+
+2011-10-05  warnes
+
+	* [r1518] Update version number for release
+
+	* [r1517] Add 'sep' argument to smartbind() to allow specification
+	  of character used to separate components of constructed names
+
+2011-09-28  warnes
+
+	* [r1513] smartbind(): Prevent coersion to data frame from mangling
+	  column names.
+
+	* [r1512] Add 'fill' argument to smartbind() to specify a value to
+	  use for missing entries.
+
+	* [r1511] Add 'fill' argument to smartbind() to specify a value to
+	  use for missing entries.
+
+2010-08-14  warnes
+
+	* [r1451] Modify mixedorder()/mixedsort() to better handle strings
+	  containing multiple periods, like version numbers (e.g 1.1.2,
+	  1.2.1. 1.1.1.1).
+
+2010-05-01  warnes
+
+	* [r1434] Update version number for new release
+
+	* [r1433] Change Greg's email address to greg at warnes.net
+
+	* [r1432] Fix error in checkRVersion()
+
+2010-04-28  ggrothendieck2
+
+	* [r1431] fixed problems with R CMD CHECK
+
+2009-05-09  warnes
+
+	* [r1328] Escape $ in .Rd file to avoid latex issues
+
+	* [r1327] Update NEWS and create softlinks for NEWS and ChangeLog
+	  in top level directory
+
+	* [r1326] Move actual NEWS file into inst.
+
+	* [r1325] Update Greg's email address and fix Rd syntax errors
+
+2009-02-16  warnes
+
+	* [r1313] Correct windows make flags as suggested by Brian Ripley.
+
+2008-08-15  warnes
+
+	* [r1303] Add keywords() function to show /doc/KEYWORDS file
+
+2008-05-29  warnes
+
+	* [r1285] Add newVersionAvailable() function to compare running and
+	  latest available R versions
+
+2008-05-26  warnes
+
+	* [r1284] Update license specification
+
+	* [r1283] Remove 'assert' man page
+
+2008-05-22  warnes
+
+	* [r1282] Finish rename of assert.R to assert-depricated.Rd
+
+	* [r1281] Add checkRVersion.R file
+
+	* [r1280] Rename again to get correct extension!
+
+	* [r1279] Update NEWS for 2.5.0
+
+	* [r1278] Add man page for checkRVersion
+
+	* [r1277] Rename assert-deprecated.R to assert.R to meet R file
+	  name requirements.
+
+	* [r1276] Add checkRVersion to NAMESPACE, and increment version in
+	  DESCRIPTION.
+
+	* [r1275] Remove broken SEE LSO reference
+
+2008-04-12  warnes
+
+	* [r1259] Improve text explanation of how defmacro() and strmacro()
+	  differ from function().
+
+	* [r1258] assert() is now deprecated in favor of base::stopifnot()
+
+	* [r1257] Rename 'assert.R' to 'deprecated.R'.
+
+	* [r1256] Assert is now deprecated in favor of base::stopifnot(),
+	  so add call to .Deprecated() to inform the user.
+
+2007-11-30  warnes
+
+	* [r1228] Update defnitions of odd() and even() to use modulus
+	  operator instead of division. Prettier, I think, :-D
+
+2007-08-08  warnes
+
+	* [r1121] Fix bug identified by R-2.6's check routings in
+	  binsearch()
+
+	* [r1120] Add the binsearch(), previously in the genetics package.
+
+2007-07-18  ggorjan
+
+	* [r1100] typo fixed
+
+2007-04-12  warnes
+
+	* [r1088] Add ask() function to prompt the user and collect a
+	  single response.
+
+2007-04-07  warnes
+
+	* [r1087] Fix improper escapes in regexp detected by R 2.5.0
+	  package check.
+
+2007-03-23  warnes
+
+	* [r1083] Allow permutations for r>n provided repeats.allowed=TRUE
+
+2006-11-28  warnes
+
+	* [r1023] Replace F with FALSE in smartbind example.
+
+2006-11-27  warnes
+
+	* [r1022] Replace T with TRUE in smartbind example
+
+	* [r1021] Temprary remove to reset binary flag
+
+	* [r1020] Temprary remove to reset binary flag
+
+	* [r1019] Add smartbind() to list of exported functions, and add
+	  corresponding documentation file.
+
+	* [r1018] Update my email address
+
+2006-11-14  ggorjan
+
+	* [r1012] Removed executable property
+
+2006-08-02  warnes
+
+	* [r977] Update my email address
+
+2006-05-05  nj7w
+
+	* [r958] Fixed minor typo - in {value} - n was replaced by r
+
+	* [r957] Fixed minor typos
+
+2006-03-01  warnes
+
+	* [r903] Add smartbind function
+
+2006-01-18  warnes
+
+	* [r845] Add concept tags to make mixedsort easier to locate.
+
+2005-12-21  warnes
+
+	* [r837] Update version number and date
+
+	* [r836] Note changes for 2.2.3
+
+	* [r835] Should now work on Windows
+
+2005-12-20  warnes
+
+	* [r834] Temporary fix to allow setTCPNoDelay.c to compile on
+	  Windows. If compiled on windows calling setTCPNoDelay will just
+	  raise an error.
+
+2005-12-14  warnes
+
+	* [r813] Change C++ comment to standard comment
+
+2005-12-13  nj7w
+
+	* [r810] *** empty log message ***
+
+	* [r809] Updated NEWS and removed ChangeLog
+
+2005-12-12  nj7w
+
+	* [r800] Updated version for CRAN release
+
+2005-12-08  warnes
+
+	* [r790] Add C source code for setTCPNoDelay.
+
+2005-12-01  nj7w
+
+	* [r776] Updated Greg's email address
+
+2005-11-29  warnes
+
+	* [r769] Add UseDynLib to NAMESPACE so the shared library gets
+	  properly loaded.
+
+	* [r768] - Remove debugging comments - Change return value on
+	  success to "Success".
+
+2005-11-22  warnes
+
+	* [r758] NAMESPACE
+
+	* [r757] Update news for 2.2.1 release.
+
+	* [r756] Fixes for R CMD check
+
+	* [r755] Add setTCPNoDelay() function and documentation
+
+	* [r745] New function 'addLast' that adds functions to R's .Last()
+	  so that they will be executed when R is terminating.
+
+2005-09-22  warnes
+
+	* [r678] More changes for strmacro(), also changes for 2.1.1
+	  release
+
+	* [r677] Add strmaco() which defines functions that use strings for
+	  macro definition
+
+2005-09-21  warnes
+
+	* [r676] Add support for DOTS/... arguments to defmacro
+
+2005-09-12  nj7w
+
+	* [r671] Updated Greg's email
+
+2005-09-02  nj7w
+
+	* [r653] Exported assert
+
+	* [r652] Updated the version number
+
+	* [r651] Added NEWS
+
+	* [r650] Added ChangeLog
+
+	* [r649] Fixed syntax errors
+
+2005-09-02  warnes
+
+	* [r648] Add assert() and documentation
+
+	* [r647] Fix problem in defmacro.Rd file: don't use \code{} in the
+	  example section.
+
+2005-08-31  warnes
+
+	* [r645] Adding the defmacro() function, extracted from
+	  
+	  Lumley T. "Programmer's Niche: Macros in {R}", R News, 2001, Vol
+	  1, No. 3, pp 11--13, \url{http://CRAN.R-project.org/doc/Rnews/}
+
+	* [r642] Add stand-alone DESCRIPTION file and remove old
+	  DESCRIPTION.in file.
+
+2005-06-13  nj7w
+
+	* [r626] Fixed a bug in mixedsort - check if "which.na" and
+	  "which.blank" is numeric(0) before subsetting the datasets.
+
+2005-06-09  nj7w
+
+	* [r625] Updating the version number, and various help files to
+	  synchronize splitting of gregmisc bundle in 4 individual
+	  components.
+
+2005-05-10  warnes
+
+	* [r619] Fix handling of NA's in mixedorder. We were using a high
+	  UTF character to try to put NA's at the end of the sort order,
+	  but R 2.1.0 checks if characters are in the correct range.
+	  Instead, we explicitly force NA's to the end.
+
+2005-04-07  warnes
+
+	* [r606] - Add scat() function which writes its arguments to stderr
+	  and flushes so that output is immediately displayed, but only if
+	  'getOption("DEBUG")' is true.
+
+2005-04-02  warnes
+
+	* [r600] Move drop.levels() from gtools to gdata.
+
+	* [r599] Minor reordering of functions in file
+
+	* [r598] Move frameApply() to gdata package.
+
+	* [r597] Fix error if only one value passed to mixedorder.
+
+	* [r596] Add proper handling where more than one quantile obtains
+	  the same value
+
+2005-04-01  warnes
+
+	* [r595] Add CVS ID tag to file headers.
+
+	* [r594] Fixes from Jim Rogers for R CMD check problems in
+	  frameApply
+
+2005-03-31  warnes
+
+	* [r591] Updates to drop.levels() and frameApply() from Jim Rogers
+
+	* [r590] Add ELISA data set used by frameApply and drop.levels
+	  examples
+
+2005-02-25  warnes
+
+	* [r562] Replace 'T' with TRUE.
+
+	* [r561] Remove dependency on ELISA data set for the example.
+
+	* [r558] Add drop.levels, frameApply to namespace export.
+
+2005-02-15  warnes
+
+	* [r542] Add frameApply and drop.levels contributed by Jim Rogers.
+
+2005-01-12  warnes
+
+	* [r515] Add dependency on R 1.9.0+ to prevent poeple from
+	  installing on old versions of R which don't support namespaces.
+
+2004-09-27  warneg
+
+	* [r461] Updated to pass R CMD check.
+
+2004-09-03  warneg
+
+	* [r446] initial bundle checkin
+
+2004-09-02  warneg
+
+	* [r442] Initial revision
+
+2004-08-27  warnes
+
+	* [r441] Fixed bug in mixedsort, and modified reorder.factor to use
+	  mixedsort.
+
+2004-08-26  warnes
+
+	* [r440] - Fix bug pointed out by Jim Rogers. - Use a more
+	  distictive internal separator: $@$ instead of just $ -
+	  Capitalization is now irrelevent for search order (unlike ASCII).
+
+2004-06-08  warnes
+
+	* [r372] Nitin Jain added by= parameter to allow specifying
+	  separation between groups.
+
+2004-05-26  warnes
+
+	* [r345] Escape underscores in email addresses so Latex is happy.
+
+	* [r343] Replace 'T' with 'TRUE' to pass R CMD check.
+
+2004-05-25  warnes
+
+	* [r334] Remove extraneous comments.
+
+	* [r333] Fix an error in the code when using repeats.allow=T and
+	  r>2. Bug report and fix both due to Elizabeth Purdom
+	  <epurdom at stanford.edu>.
+
+2004-05-24  warnes
+
+	* [r323] Check if argument is a vector before doing is.na to avoid
+	  generating a warning.
+
+	* [r322] Add invalid() function for testing if a parameter value is
+	  non-missing, non-NA, non-NULL.
+
+2004-04-27  warnes
+
+	* [r321] Replaced argument `as.list' with `simplify'. Updated
+	  documentation, and updated examples appropriately.
+
+2004-04-26  warnes
+
+	* [r320] Added as.list argument to return one list element per
+	  evaluation.
+
+2004-03-26  warnes
+
+	* [r303] Uncomment and fix large 'n' example.
+
+	* [r301] - Update to match changes in running() - Add examples to
+	  illustrate new arguments. - Modify running correlation plot
+	  example to be more clear.
+
+	* [r299] More of the same.
+
+	* [r297] Fix bug discovered by Sean Davis <sdavis2 at mail.nih.gov>.
+	  The running function took an improper shortcut. When
+	  allow.fewer=FALSE it was still passing shorter lists of elements
+	  to the called function, and then overwriting the results for the
+	  shorter lists with NAs. The code now skips evaluation of the
+	  function on lists shorter than the specified length when
+	  allow.fewer=FALSE.
+
+2004-01-21  warnes
+
+	* [r277] - Mark sprint() as depreciated. - Replace references to
+	  sprint with capture.output() - Use match.arg for halign and
+	  valign arguments to textplot.default. - Fix textplot.character so
+	  that a vector of characters is properly displayed. Previouslt,
+	  character vectors were plotted on top of each other.
+
+2003-12-03  warnes
+
+	* [r253] - match function argument defaults with 'usage'
+
+2003-11-21  warnes
+
+	* [r237] Removed 'deqn' call that was confusing things.
+
+	* [r234] Add email address to author field
+
+	* [r233] - new files
+
+	* [r232] - Change 'T' to 'TRUE' in mixedsort.R - Add missing brace
+	  in mixedsort.Rd
+
+2003-11-20  warnes
+
+	* [r230] - Move 'odd' and 'even' functions to a separate file &
+	  provide documentation
+
+2003-11-18  warnes
+
+	* [r227] - Renamed smartsort to mixedsort and added documentation.
+
+2003-11-10  warnes
+
+	* [r220] - Add files contributed by Arni Magnusson
+	  <arnima at u.washington.edu>. As well as some of my own.
+
+2003-05-23  warnes
+
+	* [r196] - library() backported from 1.7-devel. This version of the
+	  function adds the "pos=" argument to specify where in the search
+	  path the library should be placed.
+	  
+	  - updated .First.lib to use library(...pos=3) for MASS to avoid
+	  the 'genotype' data set in MASS from masking the genotype
+	  funciton in genetics when it loads gregmisc
+	  
+	  - Added logit() inv.logit() matchcols() function and
+	  corresponding docs
+
+2003-04-22  warnes
+
+	* [r189] - Fixed tpyo in example that allowed combinations(500,2)
+	  to run when it should have been ignred for testing..
+
+2003-04-10  warnes
+
+	* [r186] - Added note about the need to increase
+	  options("expressions") to use large values for 'n'. Prompted by
+	  bug report from Huan Huang <huan.huang at bnpparibas.com
+
+2003-04-04  warnes
+
+	* [r183] - Replace 'T' with 'TRUE'
+
+	* [r182] - Change occurences of 'T' to 'TRUE'
+
+	* [r181] - Allow optional arguments to sprint to be passed to print
+	  - Fix R CMD check errors
+
+	* [r180] - Allow optional arguments to sprint to be passed to print
+
+2003-04-03  warnes
+
+	* [r177] - Had mistyped 'sprint' as 'sprintf'.
+
+	* [r176] - Add help file for capture and sprintf.
+
+2003-04-02  warnes
+
+	* [r174] - Added file 'capture.R' containing capture() and
+	  sprint().
+
+2003-03-07  warnes
+
+	* [r168] - Minor changes to code to allow the package to be
+	  provided as an S-Plus chapter.
+
+2003-01-30  warnes
+
+	* [r161] - Fixed typo in email address.
+
+2003-01-02  warnes
+
+	* [r148] - Add nlevels function.
+
+2002-10-11  warnes
+
+	* [r133] - Add permute() function (wraper for sample) and man page
+
+	* [r132] - Escaped underscores in my email address that was causing
+	  a parse error in the {r,p}dirichlet man page.
+
+2002-09-30  warnes
+
+	* [r128] - Added rdirichlet() and ddirichlet() with accompaning
+	  help page and tests.
+
+2002-09-24  warnes
+
+	* [r122] - Fixed error where running was always calling running2
+	  with 'fun=mean', ignoring the specified funtion.
+
+2002-09-23  warnes
+
+	* [r117] - Modified all files to include CVS Id and Log tags.
+
+	* [r116] - Added CrossTable() and barplot2() code and docs
+	  contributed by Marc Schwartz. - Permit combinations() to be used
+	  when r>n provided repeat.allowed=TRUE - Bumped up version number
+
+2002-08-01  warnes
+
+	* [r114] - Corrected documentation mismatch for ci, ci.default.
+	  
+	  - Replaced all occurences of '_' for assignment with '<-'.
+	  
+	  - Replaced all occurences of 'T' or 'F' for 'TRUE' and 'FALSE'
+	  with the spelled out version.
+	  
+	  - Updaded version number and date.
+
+2002-04-09  warneg
+
+	* [r109] Checkin for version 0.5.3
+
+2002-03-26  warneg
+
+	* [r97] Initial Checkin
+
+	* [r96] Initial checkin.
+
+2002-03-20  warneg
+
+	* [r91] - Added definition of is.R function.
+	  
+	  - Added boxplot.formula
+
+2002-03-07  warneg
+
+	* [r90] - Added documentation and example for running2
+
+	* [r89] - Added "running2", which handles both univariate and
+	  bivariate cases - Modified "running" to call "running2"
+
+2002-02-05  warneg
+
+	* [r75] - Fix typo that caused code meant to run only under S-Plus
+	  to run under R, causing problems.
+
+2001-12-19  warneg
+
+	* [r67] - Added code for %in%.
+
+2001-09-18  warneg
+
+	* [r18] Release 0.3.2
+
+2001-09-01  warneg
+
+	* [r17] Initial checkin.
+
+	* [r16] Release 0.3.0
+
+2001-08-25  warneg
+
+	* [r13] Initial CVS checkin.
+
+	* [r11] Fixed a typo and a syntax error.
+
+	* [r7] Initial Checkin
+
+2001-06-29  warneg
+
+	* [r6] Initial revision.
+

Copied: pkg/gtools/NEWS (from rev 2190, pkg/gtools/inst/NEWS)
===================================================================
--- pkg/gtools/NEWS	                        (rev 0)
+++ pkg/gtools/NEWS	2018-06-21 17:09:49 UTC (rev 2191)
@@ -0,0 +1,369 @@
+gtools 3.7.0 - 2017-06-14
+-------------------------
+
+New functions:
+
+- Add capwords() function to apply standard capitalization rules
+  to a character string.
+
+Enhancements:
+
+- Add 'con' argument to ask() to allow specification of the
+  connection to query for input.  For use under RStudio, use
+  ask(..., con=file('stdin')).
+
+- R/na.replace.R, man/na.replace.Rd: na.replace() now
+	accepts a function to provide the replcement value.
+
+- smartbind() has a new argument 'list' to pass a list of data frames,
+  /instead of/in addition to/ data frames as arguments.
+
+- Internal changes to bring code up to current CRAN guidelines.
+
+Bug Fixes:
+
+- smartbind() now works properly with empty column names
+
+- Correct error in smartbind() when column types don't
+	match.
+
+- Fix bug in smartbind's handling of factor levels.
+
+- Improve assignment of default names in smartbind().
+
+- loadedPackages() to return data silently so that the results
+	don't get printed twice.
+
+
+gtools 3.5.0 - 2015-04-28
+-------------------------
+
+New Functions:
+
+- New roman2int() functon to convert roman numerals to integers
+  without the range restriction of utils::as.roman().
+
+- New asc() and chr() functions to convert between ASCII codes and
+  characters. (Based on the 'Data Debrief' blog entry for 2011-03-09
+  at http://datadebrief.blogspot.com/2011/03/ascii-code-table-in-r.html).
+
+- New unByteCode() and unByteCodeAssign() functions to convert a
+  byte-code functon to an interpeted code function.
+
+- New assignEdgewise() function for making assignments into locked
+  environments. (Used by unByteCodeAssign().)
+
+Enhancements:
+
+- mixedsort() and mixedorder() now have arguments 'decreasing',
+  'na.last', and 'blank.last' arguments to control sort ordering.
+
+- mixedsort() and mixedirdeR() now support Roman numerals via the
+  arguments 'numeric.type', and 'roman.case'.  (Request by David
+  Winsemius, suggested code changes by Henrik Bengtsson.)
+
+- speed up mixedorder() (and hence mixedsort()) by moving
+  suppressWarnings() outside of lapply loops. (Suggestion by Henrik
+  Bengtsson.)
+
+- The 'q' argument to quantcut() now accept an integer
+  indicating the number of equally spaced quantile groups to
+  create. (Suggestion and patch submitted by Ryan C. Thompson.)
+
+Bug fixes:
+
+- Removed stray browser() call in smartbind().
+
+- ddirichlet(x, alpha) was incorrectly returning NA when for any i,
+  x[i]=0 and alpha[i]=1.  (Bug report by John Nolan.)
+
+Other changes:
+
+- Correct typographical errors in package description.
+
+
+gtools 3.4.2 - 2015-04-06
+-------------------------
+
+New features:
+
+- New function loadedPackages() to display name, version, and path of
+  loaded packages (package namespaces).
+
+- New function: na.replace() to replace missing values within a
+  vector with a specified value.`
+
+Bug fixes:
+
+- Modify keywords() to work properly in R 3.4.X and later.
+
+
+gtools 3.4.1 - 2014-05-27
+-------------------------
+
+Bug fixes:
+
+- smartbind() now converts all non-atomic type columns (except factor)
+  to type character instead of generating an opaque error message.
+
+Other changes:
+
+- the argument to ASCIIfy() is now named 'x' instead of 'string'.
+
+- minor formatting changes to ASCIIfy() man page.
+
+gtools 3.4.0 - 2014-04-14
+-------------------------
+
+New features:
+
+- New ASCIIfy() function to converts character vectors to ASCII
+  representation by escaping them as \x00 or \u0000 codes.
+  Contributed by Arni Magnusson.
+
+
+gtools 3.3.1 - 2014-03-01
+-------------------------
+
+Bug fixes:
+
+- 'mixedorder' (and hence 'mixedsort') not properly handling
+  single-character strings between numbers, so that '1a2' was being
+  handled as a single string rather than being properly handled as
+  c('1', 'a', '2').
+
+
+
+gtools 3.3.0 - 2014-02-11
+-------------------------
+
+New features:
+
+- Add the getDependencies() function to return a list of dependencies
+  for the specified package(s).  Includes arguments to control whether
+  these dependencies should be constructed using information from
+  locally installed packages ('installed', default is TRUE), avilable
+  CRAN packages ('available', default is TRUE) and whether to include
+  base ('base', default=FALSE) and recommended ('recommended', default
+  is FALSE) packages.
+
+Bug fixes:
+
+- binsearch() was returning the wrong endpoint & value when the found
+  value was at the upper endpoint.
+
+gtools 3.2.1 - 2014-01-13
+-------------------------
+
+Bug fixes:
+
+- Resolve circular dependency with gdata
+
+
+gtools 3.2.0 - 2014-01-11
+-------------------------
+
+New features:
+
+- The keywords() function now accepts a function or function name as
+  an argument and will return the list of keywords associated with the
+  named function.
+
+- New function stars.pval() which will generate p-value significance
+  symbols ('***', '**', etc.)
+
+Bug fixes:
+
+- R/mixedsort.R: mixedorder() was failing to correctly handle numbers
+  including decimals due to a faulty regular expression.
+
+Other changes:
+
+- capture() and sprint() are now defunct.
+
+
+gtools 3.1.1 - 2013-11-06
+-------------------------
+
+Bug fixes:
+
+- Fix problem with mixedorder/mixedsort when there is zero or one
+  elements in the argument vector.
+
+
+gtools 3.1.0 - 2013-09-22
[TRUNCATED]

To get the complete diff run:
    svnlook diff /svnroot/r-gregmisc -r 2191


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