[R-gregmisc-commits] r2186 - in pkg/gmodels: . inst
noreply at r-forge.r-project.org
noreply at r-forge.r-project.org
Wed Jun 20 22:51:40 CEST 2018
Author: warnes
Date: 2018-06-20 22:51:40 +0200 (Wed, 20 Jun 2018)
New Revision: 2186
Modified:
pkg/gmodels/DESCRIPTION
pkg/gmodels/inst/ChangeLog
Log:
Update DESCRIPTION and ChangeLog for gmodels 2.16.1
Modified: pkg/gmodels/DESCRIPTION
===================================================================
--- pkg/gmodels/DESCRIPTION 2018-06-20 20:50:51 UTC (rev 2185)
+++ pkg/gmodels/DESCRIPTION 2018-06-20 20:51:40 UTC (rev 2186)
@@ -1,6 +1,6 @@
Package: gmodels
-Version: 2.16.0
-Date: 2014-07-24
+Version: 2.16.1
+Date: 2018-06-20
Title: Various R programming tools for model fitting
Author: Gregory R. Warnes, Ben Bolker, Thomas Lumley, and Randall C
Johnson. Contributions from Randall C. Johnson are Copyright
@@ -8,7 +8,7 @@
Program, of the NIH, National Cancer Institute, Center for
Cancer Research under NCI Contract NO1-CO-12400.
Maintainer: Gregory R. Warnes <greg at warnes.net>
-Description: Various R programming tools for model fitting
+Description: Various R programming tools for model fitting.
Depends: R (>= 1.9.0)
Suggests: gplots, gtools, Matrix, nlme, lme4 (>= 0.999999-0)
Imports: MASS, gdata, stats
Modified: pkg/gmodels/inst/ChangeLog
===================================================================
--- pkg/gmodels/inst/ChangeLog 2018-06-20 20:50:51 UTC (rev 2185)
+++ pkg/gmodels/inst/ChangeLog 2018-06-20 20:51:40 UTC (rev 2186)
@@ -1,194 +1,350 @@
-2014-07-24 warnes
+2018-06-20 20:35 warnes
- * [r1868] DESCRIPTION, NAMESPACE, R/ci.R, R/estimable.R, man/ci.Rd,
- man/estimable.Rd: - Estimable now adds the class 'estimable' to
- returned objects.
+ * test: Remove duplicated/incorrect 'test' directory.
+
+2017-06-12 23:53 warnes
+
+ * DESCRIPTION: Update imports
+
+2017-06-12 23:53 warnes
+
+ * NAMESPACE: Add imports for base R packages to NAMESPACE
+
+2017-06-05 21:27 warnes
+
+ * inst/NEWS: Update NEWS and ChangeLog files for 2.18.0.
+
+2016-08-15 19:11 warnes
+
+ * test, test/lme-test.R, test/test_estimable_mlm.R: Add tests for
+ mlm and (obsolete) lme
+
+2016-08-15 19:05 warnes
+
+ * R/est_p_ci.R: Add est_p_ci generic and lm method
+
+2016-08-12 17:15 warnes
+
+ * DESCRIPTION, NAMESPACE, R/ci.R, R/fit.contrast.R, inst/ChangeLog,
+ inst/NEWS, man/ci.Rd, man/estimable.Rd, man/fit.contrast.Rd:
+ Updates...
+
+2015-07-22 00:53 warnes
+
+ * DESCRIPTION: Update gmodels DESCRIPTION
+
+2015-07-22 00:48 warnes
+
+ * test, tests, tests/lme-test.R: Renamed 'test' directory to
+ 'tests', commented out tests for lme4 which has a changed API
+
+2015-07-20 23:38 warnes
+
+ * DESCRIPTION, NAMESPACE: Changs to squash new R CMD check warnings
+
+2015-07-19 03:22 warnes
+
+ * DESCRIPTION, NAMESPACE, R/ci.R, R/est.mer.R, R/estimable.R,
+ R/fit.contrast.R, R/to.est.R, inst/NEWS, man/ci.Rd,
+ man/estimable.Rd, man/fit.contrast.Rd: - Removed references to
+ 'mer' objects, sincel the nlme4 update is not backwards
+ compatible with my code.
+ - Removed 'require' calls.
+
+2015-07-19 02:34 warnes
+
+ * DESCRIPTION, inst/ChangeLog, inst/NEWS: Update DESCRIPTION,
+ ChangeLog, and NEWS for gmodels 2.16.1
+
+2015-07-19 02:30 warnes
+
+ * R/ci.R, man/ci.Rd: ci.binom() was using an incorrect method for
+ calculating binomial confidence interval. The revised code
+ calculates the Clopper-Pearson 'exect' interval, which is
+ *conservative* due to the discrete nature of the binomial
+ distribution.
+
+2015-05-02 17:38 warnes
+
+ * Rename 'trunk' to 'pkg' for compatibility with R-forge
+
+2015-04-06 21:52 warnes
+
+ * Add ChangeLog files to repository
+
+2014-07-24 15:18 warnes
+
+ * Update NEWS for gmodels 2.16.0
+
+2014-07-24 15:14 warnes
+
+ * - Estimable now adds the class 'estimable' to returned objects.
- New ci() method for estimable objects.
- Minor improvemets to man page formatting.
-2013-07-18 warnes
+2013-07-18 14:09 warnes
- * [r1710] DESCRIPTION, inst/NEWS: Looks like Brian Ripley
- repackaged for R 3.0.0 and bumped version number, so change it to
- 2.15.5
- * [r1709] DESCRIPTION, inst/NEWS: Update for gmodels 2.15.4
- * [r1708] man/ci.Rd: Update to current Rd syntax
- * [r1707] R/estimable.mlm.R, test/test_estimable_mlm.R: Correct bug
- in estimable.mlm
+ * Looks like Brian Ripley repackaged for R 3.0.0 and bumped version
+ number, so change it to 2.15.5
-2013-07-15 warnes
+2013-07-18 13:57 warnes
- * [r1706] R/ci.R, man/ci.Rd: Remove unused argument to ci.mer
+ * Update for gmodels 2.15.4
-2012-06-28 warnes
+2013-07-18 13:54 warnes
- * [r1577] DESCRIPTION, inst/NEWS: Update for gmodels version
- 2.15.3.
- * [r1576] R/percentile.R: Move percentile() function to a separate
- file.
- * [r1575] R/est.lmer.R, R/est.mer.R: Update est.mer() to support
- new S4 "mer" class.
- * [r1574] man/ci.Rd: Make lme4 example executable.
+ * Update to current Rd syntax
-2012-06-27 warnes
+2013-07-18 13:46 warnes
- * [r1573] test/lme-test.R: Add test code submitted by
- Ariel.Muldoon at oregonstate.edu.
+ * Correct bug in estimable.mlm
-2012-04-19 warnes
+2013-07-15 18:13 warnes
- * [r1528] inst/NEWS: Update for release 2.15.2
- * [r1527] DESCRIPTION: Update version and date.
- * [r1526] man/estimable.Rd: The 'Design' package has been replaced
- my 'rms', so update man page references.
- * [r1525] R/ci.R, R/est.mer.R: More fixes for support of S4 'mer'
- class from lme4 package.
- * [r1524] man/coefFrame.Rd: Split long line.
- * [r1523] man/ci.Rd, man/glh.test.Rd: Changes to pass R CMD check
+ * Remove unused argument to ci.mer
-2011-12-14 warnes
+2012-06-28 00:49 warnes
- * [r1521] R/ci.R: Improve formatting of ci.mer().
- * [r1520] R/est.mer.R: Modify est.mer to work with recent lme4
- 'mer' S4 objects.
+ * Update for gmodels version 2.15.3.
-2011-01-16 warnes
+2012-06-28 00:47 warnes
- * [r1466] DESCRIPTION, inst/NEWS, man/ci.Rd, man/estimable.Rd,
- man/fast.prcomp.Rd, man/fit.contrast.Rd, man/glh.test.Rd,
- man/make.contrasts.Rd: Fix warnings reported by R CMD check.
- Update version number to 2.15.1.
+ * Move percentile() function to a separate file.
-2009-05-09 warnes
+2012-06-28 00:41 warnes
- * [r1337] test, test/lme-test.R: Add tests for lme4 'mer' objects
- * [r1336] inst/NEWS: Update for 2.15.0
- * [r1335] DESCRIPTION: Update description for 2.15.0
- * [r1334] R/est.mer.R: Add support for lme4's 'mer' objects
- * [r1333] NAMESPACE, R/ci.R, R/est.lmer.R, R/estimable.R,
- R/fit.contrast.R, R/to.est.R: Add support for lme4's 'mer'
- objects
- * [r1332] man/glh.test.Rd: Fix .Rd syntax error
- * [r1331] NEWS: Add softlinks for ChangeLog and NEWS to top level
- dir for convenience
- * [r1330] ChangeLog, NEWS, inst, inst/NEWS: Move ChangeLog and NEWS
- files into inst directory
- * [r1329] DESCRIPTION, man/ci.Rd, man/estimable.Rd,
- man/fast.prcomp.Rd, man/fit.contrast.Rd, man/glh.test.Rd,
- man/make.contrasts.Rd: Update Greg's email address
+ * Update est.mer() to support new S4 "mer" class.
-2008-04-10 warnes
+2012-06-28 00:40 warnes
- * [r1255] man/ci.Rd: Improve languages a bit
+ * Make lme4 example executable.
-2008-01-02 warnes
+2012-06-27 22:42 warnes
- * [r1236] man/CrossTable.Rd: Update Marc's email address
+ * Add test code submitted by Ariel.Muldoon at oregonstate.edu.
-2007-12-12 warnes
+2012-04-19 22:09 warnes
- * [r1233] DESCRIPTION: Move copyright notice for Randall's
- contributions from License section to Author section of the
- DESCRIPTION file.
+ * Update for release 2.15.2
-2007-12-07 warnes
+2012-04-19 22:07 warnes
- * [r1232] DESCRIPTION, NEWS: Update DESCRIPTION and NEWS for
- release 2.14.1
- * [r1231] man/estimable.Rd: Correct minor typos in man page for
- estimable()
- * [r1230] R/estimable.R: Add support for lme models to estimable()
- * [r1229] man/estimable.Rd: Replace non-ascii characters in Soren's
- name with (equivalent?) ascii character to avoid character
- encoding issues.
+ * Update version and date.
-2007-10-22 warnes
+2012-04-19 22:06 warnes
- * [r1196] DESCRIPTION: Clarify GPL version
+ * The 'Design' package has been replaced my 'rms', so update man
+ page references.
-2007-07-26 warnes
+2012-04-19 22:05 warnes
- * [r1105] DESCRIPTION, NAMESPACE, NEWS, R/estimable.mlm.R,
- man/estimable.Rd: Add support for mlm to estimable().
- * [r1104] R/estimable.R, R/estimable.mlm.R: Add estimable method
- for mlm objects
+ * More fixes for support of S4 'mer' class from lme4 package.
-2007-03-09 warnes
+2012-04-19 21:13 warnes
- * [r1079] R/ci.R: Remove stray character
- * [r1078] NEWS: Update NEWS file.
- * [r1077] DESCRIPTION: Update version number
- * [r1076] R/ci.R: Minor code formatting changes
- * [r1075] R/est.lmer.R, man/ci.Rd: Flip lower and upper interval in
- ci.lmer(). Add example to man page.
- * [r1074] man/ci.Rd, man/estimable.Rd: Fix some old email
- addressses that got missed
+ * Split long line.
-2006-11-29 warnes
+2012-04-19 17:50 warnes
- * [r1029] NEWS: Update for 2.13.1
- * [r1028] NAMESPACE: Correct declartion of S3 methods for
- estimable()
- * [r1027] DESCRIPTION: Add additional suggested packages
- * [r1026] R/estimable.R, man/estimable.Rd: - Add generic
+ * Changes to pass R CMD check
+
+2011-12-14 18:17 warnes
+
+ * Improve formatting of ci.mer().
+
+2011-12-14 18:14 warnes
+
+ * Modify est.mer to work with recent lme4 'mer' S4 objects.
+
+2011-01-16 22:17 warnes
+
+ * Fix warnings reported by R CMD check. Update version number to
+ 2.15.1.
+
+2009-05-09 05:29 warnes
+
+ * Add tests for lme4 'mer' objects
+
+2009-05-09 05:04 warnes
+
+ * Update for 2.15.0
+
+2009-05-09 05:02 warnes
+
+ * Update description for 2.15.0
+
+2009-05-09 05:01 warnes
+
+ * Add support for lme4's 'mer' objects
+
+2009-05-09 05:00 warnes
+
+ * Add support for lme4's 'mer' objects
+
+2009-05-09 04:53 warnes
+
+ * Fix .Rd syntax error
+
+2009-05-09 04:37 warnes
+
+ * Add softlinks for ChangeLog and NEWS to top level dir for
+ convenience
+
+2009-05-09 04:36 warnes
+
+ * Move ChangeLog and NEWS files into inst directory
+
+2009-05-09 04:00 warnes
+
+ * Update Greg's email address
+
+2008-04-10 14:05 warnes
+
+ * Improve languages a bit
+
+2008-01-02 16:56 warnes
+
+ * Update Marc's email address
+
+2007-12-12 21:16 warnes
+
+ * Move copyright notice for Randall's contributions from License
+ section to Author section of the DESCRIPTION file.
+
+2007-12-07 22:21 warnes
+
+ * Update DESCRIPTION and NEWS for release 2.14.1
+
+2007-12-07 22:10 warnes
+
+ * Correct minor typos in man page for estimable()
+
+2007-12-07 22:09 warnes
+
+ * Add support for lme models to estimable()
+
+2007-12-07 22:07 warnes
+
+ * Replace non-ascii characters in Soren's name with (equivalent?)
+ ascii character to avoid character encoding issues.
+
+2007-10-22 02:24 warnes
+
+ * Clarify GPL version
+
+2007-07-26 00:20 warnes
+
+ * Add support for mlm to estimable().
+
+2007-07-26 00:10 warnes
+
+ * Add estimable method for mlm objects
+
+2007-03-09 22:35 warnes
+
+ * Remove stray character
+
+2007-03-09 20:10 warnes
+
+ * Update NEWS file.
+
+2007-03-09 20:07 warnes
+
+ * Update version number
+
+2007-03-09 20:06 warnes
+
+ * Minor code formatting changes
+
+2007-03-09 20:06 warnes
+
+ * Flip lower and upper interval in ci.lmer(). Add example to man
+ page.
+
+2007-03-09 19:43 warnes
+
+ * Fix some old email addressses that got missed
+
+2006-11-29 00:11 warnes
+
+ * Update for 2.13.1
+
+2006-11-29 00:05 warnes
+
+ * Correct declartion of S3 methods for estimable()
+
+2006-11-29 00:05 warnes
+
+ * Add additional suggested packages
+
+2006-11-29 00:04 warnes
+
+ * - Add generic
- Fix code vs. doc inconsistiencies
-2006-11-28 warnes
+2006-11-28 22:38 warnes
- * [r1025] R/ci.R, R/estimable.R, R/fast.prcomp.R: Remove extraneous
- comma that causes errors in R 2.5.0
+ * Remove extraneous comma that causes errors in R 2.5.0
-2006-11-27 warnes
+2006-11-27 20:45 warnes
- * [r1016] DESCRIPTION, NEWS: Update for 2.13.1
- * [r1015] DESCRIPTION, NAMESPACE: Add missing export of methods for
- estimable()
+ * Update for 2.13.1
-2006-11-14 ggorjan
+2006-11-27 20:36 warnes
- * [r1012] R/ci.R, R/fast.prcomp.R, man/ci.Rd: Removed executable
- property
+ * Add missing export of methods for estimable()
-2006-08-02 warnes
+2006-11-14 22:25 ggorjan
- * [r977] man/fast.prcomp.Rd, man/fit.contrast.Rd, man/glh.test.Rd,
- man/make.contrasts.Rd: Update my email address
+ * Removed executable property
-2006-06-06 nj7w
+2006-08-02 22:21 warnes
- * [r966] man/ci.Rd, man/estimable.Rd, man/fit.contrast.Rd: Updated
- ci, estimable and fit.contrast as per Randall Johnson
+ * Update my email address
-2006-06-05 nj7w
+2006-06-06 19:17 nj7w
- * [r965] DESCRIPTION: Additions as per Randall C Johnson
- * [r964] R/ci.R, R/estimable.R, R/fit.contrast.R, R/to.est.R:
- Additions as per Randall C Johnson
- * [r963] R/est.lmer.R: - New function to estimate CI's and p-values
- using mcmcsamp() from the
+ * Updated ci, estimable and fit.contrast as per Randall Johnson
+
+2006-06-05 21:00 nj7w
+
+ * Additions as per Randall C Johnson
+
+2006-06-05 20:59 nj7w
+
+ * Additions as per Randall C Johnson
+
+2006-06-05 20:57 nj7w
+
+ * - New function to estimate CI's and p-values using mcmcsamp()
+ from the
Matrix package
-2006-05-05 nj7w
+2006-05-05 18:29 nj7w
- * [r959] R/CrossTable.R, man/CrossTable.Rd: Fixed an error:
- According to Marc Schwartz - there was an error when a matrix
- without dimnames(or names(dimnames)) was passed as x argument
+ * Fixed an error: According to Marc Schwartz - there was an error
+ when a matrix without dimnames(or names(dimnames)) was passed as
+ x argument
-2005-12-13 nj7w
+2005-12-13 16:03 nj7w
- * [r808] ChangeLog: Removed ChangeLog
- * [r807] NEWS: Updated NEWS
+ * Removed ChangeLog
-2005-12-12 nj7w
+2005-12-13 16:02 nj7w
- * [r796] DESCRIPTION: Updated version number for CRAN
+ * Updated NEWS
-2005-12-04 warnes
+2005-12-12 21:57 nj7w
- * [r781] NEWS: Update for 2.11.0
- * [r780] DESCRIPTION, NAMESPACE, R/ci.R, R/estimable.R,
- R/fit.contrast.R, R/to.est.R, man/ci.Rd, man/estimable.Rd:
- Integration of code changes suggested by Randall C Johnson to add
+ * Updated version number for CRAN
+
+2005-12-04 06:27 warnes
+
+ * Update for 2.11.0
+
+2005-12-04 06:12 warnes
+
+ * Integration of code changes suggested by Randall C Johnson to add
support for lmer (lme version 4) objects to ci(), estimable(),
and
fit.contrast().
@@ -201,69 +357,76 @@
estimable(reg, c( 0, 1, 0, -1) )
which should make estimable much easier to use for large models.
-2005-12-01 nj7w
+2005-12-01 16:54 nj7w
- * [r776] man/ci.Rd, man/coefFrame.Rd, man/estimable.Rd,
- man/fit.contrast.Rd, man/make.contrasts.Rd: Updated Greg's email
- address
+ * Updated Greg's email address
-2005-10-27 warnes
+2005-10-27 11:21 warnes
- * [r709] DESCRIPTION: Update version number. Bump minor version
- since we added functionality.
- * [r708] DESCRIPTION, NAMESPACE: Add ci.binom() to NAMESPACE, bump
- version
+ * Update version number. Bump minor version since we added
+ functionality.
-2005-10-26 warnes
+2005-10-27 10:33 warnes
- * [r707] R/ci.R, man/ci.Rd: Add ci.binom
+ * Add ci.binom() to NAMESPACE, bump version
-2005-10-25 warnes
+2005-10-26 13:39 warnes
- * [r706] NAMESPACE: Add gdata::nobs to import list. Needed by ci()
+ * Add ci.binom
-2005-09-12 nj7w
+2005-10-25 21:18 warnes
- * [r671] man/fast.prcomp.Rd, man/glh.test.Rd: Updated Greg's email
+ * Add gdata::nobs to import list. Needed by ci()
-2005-09-07 nj7w
+2005-09-12 15:44 nj7w
- * [r667] man/CrossTable.Rd: Fixed man page
+ * Updated Greg's email
-2005-09-06 nj7w
+2005-09-07 15:31 nj7w
- * [r664] DESCRIPTION: Updated DESCRIPTION
- * [r663] NEWS: Added NEWS
- * [r662] DESCRIPTION: Fixed the Package name
+ * Fixed man page
-2005-09-02 nj7w
+2005-09-06 21:34 nj7w
- * [r655] ChangeLog: Added ChangeLog
+ * Updated DESCRIPTION
-2005-08-31 nj7w
+2005-09-06 21:34 nj7w
- * [r644] DESCRIPTION: Added DESCRIPTION file
- * [r643] DESCRIPTION.in: removed DESCRIPTION.in
+ * Added NEWS
-2005-07-11 nj7w
+2005-09-06 16:21 nj7w
- * [r627] R/CrossTable.R, man/CrossTable.Rd: Revision based on Marc
- Schwartz's suggestions:
+ * Fixed the Package name
+
+2005-09-02 23:10 nj7w
+
+ * Added ChangeLog
+
+2005-08-31 16:28 nj7w
+
+ * Added DESCRIPTION file
+
+2005-08-31 16:27 nj7w
+
+ * removed DESCRIPTION.in
+
+2005-07-11 21:35 nj7w
+
+ * Revision based on Marc Schwartz's suggestions:
1) Added 'dnn' argument to enable specification of dimnames as
per table()
2) Corrected bug in SPSS output for 1d table, where proportions
were being printed and not percentages ('%' output)
-2005-06-09 nj7w
+2005-06-09 14:20 nj7w
- * [r625] R/ci.R, R/coefFrame.R, R/estimable.R, R/fast.prcomp.R,
- R/fit.contrast.R, R/glh.test.R, R/make.contrasts.R,
- man/CrossTable.Rd, man/ci.Rd, man/coefFrame.Rd, man/estimable.Rd,
- man/fast.prcomp.Rd, man/fit.contrast.Rd, man/glh.test.Rd,
- man/make.contrasts.Rd: Updating the version number, and various
- help files to synchronize splitting of gregmisc bundle in 4
- individual components.
- * [r623] R/CrossTable.R: Updates by Marc Schwartz:
+ * Updating the version number, and various help files to
+ synchronize splitting of gregmisc bundle in 4 individual
+ components.
+
+2005-06-09 14:13 nj7w
+
+ * Updates by Marc Schwartz:
CrossTable:
# Revision 2.0 2005/04/27
@@ -271,110 +434,110 @@
# so that large integers do not print in
# scientific notation
-2005-05-13 nj7w
+2005-05-13 18:59 nj7w
- * [r621] man/CrossTable.Rd: 1) Using dQuote.ascii function in
- read.xls as the new version of dQuote doesn't work proprly with
- UTF-8 locale.
+ * 1) Using dQuote.ascii function in read.xls as the new version of
+ dQuote doesn't work proprly with UTF-8 locale.
2) Modified CrossTable.Rd usage in gmodels
3) Modified heatmap.2 usage in gplots.
-2005-05-11 warnes
+2005-05-11 13:51 warnes
- * [r620] DESCRIPTION.in, NAMESPACE: Add dependency on
- gdata::frameApply.
+ * Add dependency on gdata::frameApply.
-2005-03-31 warnes
+2005-03-31 20:32 warnes
- * [r593] NAMESPACE: Add ceofFrame function to NAMESPACE
- * [r592] man/coefFrame.Rd: coefFrame example needs to properly load
- ELISA data from gtools package
- * [r588] R/CrossTable.R, man/CrossTable.Rd, man/ci.Rd,
- man/estimable.Rd, man/fast.prcomp.Rd, man/fit.contrast.Rd,
- man/glh.test.Rd, man/make.contrasts.Rd: Ensure that each file has
- $Id$ header, and no $Log$
- * [r587] R/coefFrame.R, man/coefFrame.Rd: Add coefFrame() function
- contributed by Jim Rogers
+ * Add ceofFrame function to NAMESPACE
-2005-01-18 warnes
+2005-03-31 19:05 warnes
- * [r521] R/CrossTable.R: Removed Windows Line Endings
+ * coefFrame example needs to properly load ELISA data from gtools
+ package
-2005-01-14 nj7w
+2005-03-31 18:31 warnes
- * [r518] man/CrossTable.Rd: Updated the manual to reflect
- prop.chisq change in its R file.
+ * Ensure that each file has $Id$ header, and no $Log$
-2005-01-14 warnes
+2005-03-31 18:30 warnes
- * [r517] R/CrossTable.R: Nitin added display of the Chisquare
- contribution of each cell, as suggested
+ * Add coefFrame() function contributed by Jim Rogers
+
+2005-01-18 19:53 warnes
+
+ * Removed Windows Line Endings
+
+2005-01-14 21:40 nj7w
+
+ * Updated the manual to reflect prop.chisq change in its R file.
+
+2005-01-14 19:14 warnes
+
+ * Nitin added display of the Chisquare contribution of each cell,
+ as suggested
by Greg Snow.
-2005-01-12 warnes
+2005-01-12 20:50 warnes
- * [r515] DESCRIPTION.in: Add dependency on R 1.9.0+ to prevent
- poeple from installing on old
+ * Add dependency on R 1.9.0+ to prevent poeple from installing on
+ old
versions of R which don't support namespaces.
-2004-12-23 nj7w
+2004-12-23 19:32 nj7w
- * [r507] R/CrossTable.R, man/CrossTable.Rd: Split the function
- print.CrossTable.vector in two parts - for SAS behaiour and SPSS
- behaviour. Also put the code of printing statistics in a function
- 'print.statistics'
+ * Split the function print.CrossTable.vector in two parts - for SAS
+ behaiour and SPSS behaviour. Also put the code of printing
+ statistics in a function 'print.statistics'
-2004-12-21 warnes
+2004-12-21 22:38 warnes
- * [r502] R/CrossTable.R: Added & extended changes made by Nitin to
- implement 'SPSS' format, as suggested by
+ * Added & extended changes made by Nitin to implement 'SPSS'
+ format, as suggested by
Dirk Enzmann <dirk.enzmann at jura.uni-hamburg.de>.
-2004-09-30 warneg
+2004-09-30 21:03 warneg
- * [r464] man/glh.test.Rd: Fix typos.
+ * Fix typos.
-2004-09-27 warneg
+2004-09-27 21:01 warneg
- * [r461] DESCRIPTION, DESCRIPTION.in: Updated to pass R CMD check.
+ * Updated to pass R CMD check.
-2004-09-03 warneg
+2004-09-03 22:44 warneg
- * [r450] man/fit.contrast.Rd: Add explicit package to call to
- quantcut in example.
- * [r446] DESCRIPTION, NAMESPACE, R/CrossTable.R, R/ci.R,
- R/estimable.R, R/fast.prcomp.R, R/fit.contrast.R, R/glh.test.R,
- R/make.contrasts.R, man/estimable.Rd, man/fit.contrast.Rd,
- man/glh.test.Rd, man/make.contrasts.Rd: initial bundle checkin
+ * Add explicit package to call to quantcut in example.
-2004-09-02 warneg
+2004-09-03 17:27 warneg
- * [r442] DESCRIPTION, DESCRIPTION.in, NAMESPACE: Initial revision
+ * initial bundle checkin
-2004-05-25 warnes
+2004-09-02 17:14 warneg
- * [r327] R/CrossTable.R, man/CrossTable.Rd: Updates from Mark
- Schwartz.
+ * Initial revision
-2004-04-13 warnes
+2004-05-25 02:57 warnes
- * [r314] man/estimable.Rd: Fix latex warning: it doesn't like
- double subscripts.
+ * Updates from Mark Schwartz.
-2004-03-26 warnes
+2004-04-13 11:41 warnes
- * [r306] man/fast.prcomp.Rd: Reflect movement of code from 'mva'
- package to 'stats' in R 1.9.0.
+ * Fix latex warning: it doesn't like double subscripts.
-2004-03-25 warnes
+2004-03-26 22:28 warnes
- * [r296] R/estimable.R, man/estimable.Rd: - Estimable was reporting
- sqrt(X^2) rather than X^2 in the output.
+ * Reflect movement of code from 'mva' package to 'stats' in R
+ 1.9.0.
+
+2004-03-25 20:09 warnes
+
+ * - Estimable was reporting sqrt(X^2) rather than X^2 in the
+ output.
- Provide latex math markup for linear algebra expressions in
help text.
- Other clarifications in help text
- * [r295] R/estimable.R, man/estimable.Rd: Add enhancements to
- estimable() provided by S�ren H�jsgaard
+
+2004-03-25 18:17 warnes
+
+ * Add enhancements to estimable() provided by S�ren H�jsgaard
\email{sorenh at agrsci.dk}:
I have made a modified version of the function [..] which
@@ -382,40 +545,38 @@
2) can test hypotheses af the forb L * beta = beta0 both as a
single Wald test and row-wise for each row in L.
-2003-11-17 warnes
+2003-11-17 21:40 warnes
- * [r221] R/fit.contrast.R: - Fix incorrect handling of glm objects
- by fit.contrast, as reported
+ * - Fix incorrect handling of glm objects by fit.contrast, as
+ reported
by Ulrich Halekoh, Phd <ulrich.halekoh at agrsci.dk>.
- Add regression test code to for this bug.
-2003-08-07 warnes
+2003-08-07 03:49 warnes
- * [r217] R/ci.R: - Fixed incorrect denominator in standard error
- for mean in ci.default.
+ * - Fixed incorrect denominator in standard error for mean in
+ ci.default.
-2003-04-22 warnes
+2003-04-22 17:24 warnes
- * [r190] R/fit.contrast.R: - the variable 'df' was used within the
- lme code section overwriting
+ * - the variable 'df' was used within the lme code section
+ overwriting
the argument 'df'.
-2003-03-12 warnes
+2003-03-12 17:58 warnes
- * [r173] man/fit.contrast.Rd: - Fixed a typo in the example
+ * - Fixed a typo in the example
- Added to lme example
-2003-03-07 warnes
+2003-03-07 15:48 warnes
- * [r168] R/fast.prcomp.R: - Minor changes to code to allow the
- package to be provided as an
+ * - Minor changes to code to allow the package to be provided as an
S-Plus chapter.
-2003-01-30 warnes
+2003-01-30 21:53 warnes
- * [r160] R/fit.contrast.R, man/fit.contrast.Rd: - Renamed
- 'contrast.lm' to 'fit.contrast'. This new name is more
+ * - Renamed 'contrast.lm' to 'fit.contrast'. This new name is more
descriptive and makes it easier to create and use methods for
other
classes, eg lme.
@@ -429,8 +590,11 @@
calls fit.contrast
- Updated help text to match changes.
- * [r158] R/CrossTable.R, man/CrossTable.Rd: - Removed argument
- 'correct' and now print separate corrected values
+
+2003-01-30 21:41 warnes
+
+ * - Removed argument 'correct' and now print separate corrected
+ values
for 2 x 2 tables.
- Added arguments 'prop.r', 'prop.c' and 'prop.t' to toggle
printing
@@ -444,65 +608,72 @@
table
counts, proportions and the results of the appropriate
statistical tests.
- * [r157] R/make.contrasts.R: - Added explicit check to ensure that
- the number of specified
+
+2003-01-30 14:58 warnes
+
+ * - Added explicit check to ensure that the number of specified
contrasts is less than or equal to the ncol - 1. Previously, this
failed with an obtuse error message when the contrast matrix had
row
names, and silently dropped contrasts over ncol-1.
-2002-11-04 warnes
+2002-11-04 14:13 warnes
- * [r142] R/CrossTable.R: - Moved fisher.test() to after table is
- printed, so that table is
+ * - Moved fisher.test() to after table is printed, so that table is
still printed in the event that fisher.test() results in errors.
-2002-10-29 warnes
+2002-10-29 23:06 warnes
- * [r138] R/fast.prcomp.R, man/fast.prcomp.Rd: - Fixes to fast.svd
- to make it actually work.
+ * - Fixes to fast.svd to make it actually work.
- Updates to man page to fix mistmatches between code and docs
and to
fix warnings.
- * [r137] R/make.contrasts.R, man/make.contrasts.Rd: - Moved
- make.contrasts to a separate file.
+
+2002-10-29 23:00 warnes
+
+ * - Moved make.contrasts to a separate file.
- Enhanced make contrasts to better label contrast matrix, to
give
how.many a default value, and to coerce vectors into row
matrixes.
- Added help page for make.contrasts.
- Added link from contrasts.lm seealso to make.contrasts.
- * [r136] R/fast.prcomp.R, man/fast.prcomp.Rd: Initial checkin for
- fast.prcomp() and fast.svd().
-2002-09-26 warnes
+2002-10-29 19:29 warnes
- * [r127] man/glh.test.Rd: - Added note and example code to
- illustrate how to properly compute
+ * Initial checkin for fast.prcomp() and fast.svd().
+
+2002-09-26 12:11 warnes
+
+ * - Added note and example code to illustrate how to properly
+ compute
contrasts for the first factor in the model.
-2002-09-24 warnes
+2002-09-24 19:12 warnes
- * [r124] R/glh.test.R: - Fixed a typo.
+ * - Fixed a typo.
-2002-09-23 warnes
+2002-09-23 14:27 warnes
- * [r119] man/CrossTable.Rd, man/glh.test.Rd: - Fixed syntax errors
- in barplot2.Rd and CrossTable.Rd
+ * - Fixed syntax errors in barplot2.Rd and CrossTable.Rd
- Fixed incorrect translation of 'F' (distribution) to 'FALSE' in
glh.test.Rd
- * [r117] R/ci.R, man/estimable.Rd, man/glh.test.Rd: - Modified all
- files to include CVS Id and Log tags.
- * [r116] R/CrossTable.R, man/CrossTable.Rd: - Added CrossTable()
- and barplot2() code and docs contributed by Marc Schwartz.
+
+2002-09-23 13:59 warnes
+
+ * - Modified all files to include CVS Id and Log tags.
+
+2002-09-23 13:38 warnes
+
+ * - Added CrossTable() and barplot2() code and docs contributed by
+ Marc Schwartz.
- Permit combinations() to be used when r>n provided
repeat.allowed=TRUE
- Bumped up version number
-2002-08-01 warnes
+2002-08-01 19:37 warnes
- * [r114] R/ci.R, man/ci.Rd, man/estimable.Rd, man/glh.test.Rd: -
- Corrected documentation mismatch for ci, ci.default.
+ * - Corrected documentation mismatch for ci, ci.default.
- Replaced all occurences of '_' for assignment with '<-'.
@@ -512,103 +683,130 @@
- Updaded version number and date.
-2002-04-09 warneg
+2002-04-09 00:51 warneg
- * [r109] R/ci.R, R/estimable.R, R/glh.test.R, man/glh.test.Rd:
- Checkin for version 0.5.3
+ * Checkin for version 0.5.3
-2002-03-26 warneg
+2002-03-26 21:22 warneg
- * [r104] R/ci.R, R/glh.test.R, man/ci.Rd, man/glh.test.Rd: -
- Changed methods to include '...' to match the generic.
+ * - Changed methods to include '...' to match the generic.
- Updated for version 0.5.1
- * [r99] man/glh.test.Rd: Removed incorrect link to 'contrast' from
- seealso.
-2002-02-20 warneg
+2002-03-26 15:30 warneg
- * [r81] man/ci.Rd, man/estimable.Rd, man/glh.test.Rd: Minor
- changes, typo and formatting fixes.
+ * Removed incorrect link to 'contrast' from seealso.
-2002-01-17 warneg
+2002-02-20 20:09 warneg
- * [r70] man/estimable.Rd: - Fixed errror in last example by adding
- 'conf.int' parameter to
+ * Minor changes, typo and formatting fixes.
+
+2002-01-17 23:51 warneg
+
+ * - Fixed errror in last example by adding 'conf.int' parameter to
'estimable' call.
- * [r69] R/glh.test.R: - Fixed typo in code that resulted in an
- syntax error.
-2002-01-10 warneg
+2002-01-17 23:42 warneg
- * [r68] R/glh.test.R: - print.glh.test() was using cat() to
- printing the call. This didn't work and
+ * - Fixed typo in code that resulted in an syntax error.
+
+2002-01-10 17:35 warneg
+
+ * - print.glh.test() was using cat() to printing the call. This
+ didn't work and
generated an error.
-2001-12-19 warneg
+2001-12-19 20:06 warneg
- * [r66] man/glh.test.Rd: - Fixed display of formulae.
+ * - Fixed display of formulae.
- Added description of return value
- * [r65] R/glh.test.R: - Removed extra element of return object.
-2001-12-18 warneg
+2001-12-19 20:05 warneg
- * [r64] man/estimable.Rd: - Updated documentation to reflect change
- of parameters from 'alpha'
+ * - Removed extra element of return object.
+
+2001-12-18 22:14 warneg
+
+ * - Updated documentation to reflect change of parameters from
+ 'alpha'
to 'conf.int', including the new optional status of the
confidence
intervals.
- * [r63] R/estimable.R: - Modified to make confidence intervals
- optional. Changed 'alpha'
+
+2001-12-18 22:12 warneg
+
+ * - Modified to make confidence intervals optional. Changed 'alpha'
parameter giving significance level to 'conf.int' giving
confidence
level.
- * [r62] man/glh.test.Rd: - Added summary.glh.test to alias, usage,
- and example sections.
- * [r61] R/glh.test.R: - Modified to work correctly when obj is of
- class 'aov' by specifying
+
+2001-12-18 21:36 warneg
+
+ * - Added summary.glh.test to alias, usage, and example sections.
+
+2001-12-18 21:34 warneg
+
+ * - Modified to work correctly when obj is of class 'aov' by
+ specifying
summary.lm instead of summary. This ensures that the summary
object
has the fields we need.
- Moved detailed reporting of results from 'print' to 'summary'
function and added a simpler report to 'print'
- * [r60] R/estimable.R: - Modified to work correctly when obj is of
- class 'aov' by specifying
+
+2001-12-18 21:27 warneg
+
+ * - Modified to work correctly when obj is of class 'aov' by
+ specifying
summary.lm instead of summary. This ensures that the summary
object
has the fields we need.
- * [r59] R/glh.test.R, man/glh.test.Rd: Initial checkin.
-2001-12-17 warneg
+2001-12-18 00:45 warneg
- * [r56] man/estimable.Rd: - Fixed spelling errors.
- * [r55] man/estimable.Rd: - Fixed the link to contrasts.lm.
+ * Initial checkin.
+
+2001-12-17 18:59 warneg
+
+ * - Fixed spelling errors.
+
+2001-12-17 18:52 warneg
+
+ * - Fixed the link to contrasts.lm.
- Rephrased title/description to be more clear.
-2001-12-10 warneg
+2001-12-10 19:35 warneg
- * [r49] man/estimable.Rd: Renamed 'contrsts.coeff.Rd' to
- 'estimable.Rd' corresponding to function rename.
- * [r48] R/estimable.R: renamed from contrast.coeff.R to estimable.R
- (incorrectly via contrast.lm.R)
+ * Renamed 'contrsts.coeff.Rd' to 'estimable.Rd' corresponding to
+ function rename.
-2001-12-07 warneg
+2001-12-10 19:26 warneg
- * [r37] man/ci.Rd: - Added text noting that lme is now supported.
- * [r36] R/ci.R: - Fixed typo: DF column was being filled in with
- p-value.
- * [r35] R/ci.R: - Added ci.lme method to handle lme objects.
+ * renamed from contrast.coeff.R to estimable.R (incorrectly via
+ contrast.lm.R)
-2001-10-16 warneg
+2001-12-07 19:50 warneg
- * [r27] man/ci.Rd: Fixed unbalanced brace.
+ * - Added text noting that lme is now supported.
-2001-08-25 warneg
+2001-12-07 19:19 warneg
- * [r12] man/ci.Rd: - Added CVS header.
+ * - Fixed typo: DF column was being filled in with p-value.
+
+2001-12-07 18:49 warneg
+
+ * - Added ci.lme method to handle lme objects.
+
+2001-10-16 23:15 warneg
+
+ * Fixed unbalanced brace.
+
+2001-08-25 05:52 warneg
+
+ * - Added CVS header.
- Added my email address.
-2001-05-30 warneg
+2001-05-30 13:23 warneg
- * [r2] ., R, R/ci.R, man, man/ci.Rd: Initial revision
+ * Initial revision
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