From noreply at r-forge.r-project.org  Tue Jun  2 21:03:20 2015
From: noreply at r-forge.r-project.org (noreply at r-forge.r-project.org)
Date: Tue,  2 Jun 2015 21:03:20 +0200 (CEST)
Subject: [R-gregmisc-commits] r2052 - pkg/gplots/R
Message-ID: <20150602190320.94CCA187A5F@r-forge.r-project.org>

Author: warnes
Date: 2015-06-02 21:03:20 +0200 (Tue, 02 Jun 2015)
New Revision: 2052

Modified:
   pkg/gplots/R/boxplot2.R
Log:
Defunct message for boxplot.n was recommending the wrong function

Modified: pkg/gplots/R/boxplot2.R
===================================================================
--- pkg/gplots/R/boxplot2.R	2015-05-29 02:57:50 UTC (rev 2051)
+++ pkg/gplots/R/boxplot2.R	2015-06-02 19:03:20 UTC (rev 2052)
@@ -1,7 +1,7 @@
 # $Id$
 boxplot.n <- function( ..., top=FALSE, shrink=1.0, textcolor=NULL )
     {
-        .Defunct("gboxplot", package="gplots")
+        .Defunct("boxplot2", package="gplots")
     }
 
 boxplot2  <- function( ..., top=FALSE, shrink=1.0, textcolor=NULL )


From noreply at r-forge.r-project.org  Tue Jun 30 00:30:01 2015
From: noreply at r-forge.r-project.org (noreply at r-forge.r-project.org)
Date: Tue, 30 Jun 2015 00:30:01 +0200 (CEST)
Subject: [R-gregmisc-commits] r2053 - in pkg/gdata: R man
Message-ID: <20150629223001.6639A187A61@r-forge.r-project.org>

Author: warnes
Date: 2015-06-30 00:30:00 +0200 (Tue, 30 Jun 2015)
New Revision: 2053

Modified:
   pkg/gdata/R/upperTriangle.R
   pkg/gdata/man/upperTriangle.Rd
Log:
Add 'byrow' argument to lowerTriangle()/upperTriangle() functions.

Modified: pkg/gdata/R/upperTriangle.R
===================================================================
--- pkg/gdata/R/upperTriangle.R	2015-06-02 19:03:20 UTC (rev 2052)
+++ pkg/gdata/R/upperTriangle.R	2015-06-29 22:30:00 UTC (rev 2053)
@@ -1,22 +1,42 @@
-upperTriangle <- function(x, diag=FALSE)
+upperTriangle <- function(x, diag=FALSE, byrow=FALSE)
   {
-    x[upper.tri(x, diag=diag)]
+    if(byrow)
+      t(x)[rev(upper.tri(x, diag=diag))]
+    else
+      x[upper.tri(x, diag=diag)]
   }
 
-"upperTriangle<-" <- function(x, diag=FALSE, value)
+"upperTriangle<-" <- function(x, diag=FALSE, byrow=FALSE, value)
   {
-    x[upper.tri(x, diag=diag)] <- value
-    x
+    if(byrow) {
+      ret <- t(x)
+      ret[rev(upper.tri(x, diag=diag))] <- value
+      t(ret)
+    }
+    else {        
+      x[upper.tri(x, diag=diag)] <- value
+      x
+    }
   }
 
-lowerTriangle <- function(x, diag=FALSE)
+lowerTriangle <- function(x, diag=FALSE, byrow=FALSE)
   {
+  if(byrow)
+    t(x)[rev(lower.tri(x, diag=diag))]
+  else
     x[lower.tri(x, diag=diag)]
   }
 
-"lowerTriangle<-" <- function(x, diag=FALSE, value)
+"lowerTriangle<-" <- function(x, diag=FALSE, byrow=FALSE, value)
   {
+  if(byrow) {
+    ret <- t(x)
+    ret[rev(lower.tri(x, diag=diag))] <- value
+    t(ret)
+  }
+  else {        
     x[lower.tri(x, diag=diag)] <- value
     x
   }
+}
 

Modified: pkg/gdata/man/upperTriangle.Rd
===================================================================
--- pkg/gdata/man/upperTriangle.Rd	2015-06-02 19:03:20 UTC (rev 2052)
+++ pkg/gdata/man/upperTriangle.Rd	2015-06-29 22:30:00 UTC (rev 2053)
@@ -8,15 +8,18 @@
   Extract or replace the upper/lower triangular portion of a matrix
 }
 \usage{
-upperTriangle(x, diag=FALSE)
-upperTriangle(x, diag=FALSE) <- value
-lowerTriangle(x, diag=FALSE)
-lowerTriangle(x, diag=FALSE) <- value
+upperTriangle(x, diag=FALSE, byrow=FALSE)
+upperTriangle(x, diag=FALSE, byrow=FALSE) <- value
+lowerTriangle(x, diag=FALSE, byrow=FALSE)
+lowerTriangle(x, diag=FALSE, byrow=FALSE) <- value
 }
 %- maybe also 'usage' for other objects documented here.
 \arguments{
   \item{x}{Matrix}
   \item{diag}{Logical.  If \code{TRUE}, include the matrix diagonal.}
+  \item{byrow}{Logical.  If \code{FALSE}, return/replace elements in 
+    column-wise order. If \code{TRUE}, return/replace elements in 
+    row-wise order.}
   \item{value}{Either a single value or a vector of length equal to that
     of the current upper/lower triangular.  Should be of a mode which 
     can be coerced to that of \code{x}.}
@@ -25,19 +28,35 @@
 \value{
   \code{upperTriangle(x)} and \code{lowerTriangle(x)} return the upper
   or lower triangle of matrix x, respectively. The assignment forms
-  replace the upper or lower traingular area of the
-  matrix with the provided value(s).
+  replace the upper or lower triangular area of the
+  matrix with the provided value(s).  
   }
+\note{
+  By default, the elements are returned/replaced in R's default column-wise order.  Thus 
+  \preformatted{  lowerTriangle(x) <- upperTriangle(x)}
+  will not yield a symmetric matrix.  Instead use:
+  \preformatted{  lowerTriangle(x) <- upperTriangle(x, byrow=TRUE)} 
+  or equivalently:
+  \preformatted{  lowerTriangle(x, byrow=TRUE) <- upperTriangle(x)} 
+}
+  
 \author{Gregory R. Warnes \email{greg at warnes.net}}
-\seealso{ \code{\link[base]{diag}} }
+\seealso{ 
+  \code{\link[base]{diag}},  
+  \code{\link[base]{lower.tri}}, 
+  \code{\link[base]{upper.tri}}
+}
 \examples{
   x <- matrix( 1:25, nrow=5, ncol=5)
   x
   upperTriangle(x)
   upperTriangle(x, diag=TRUE)
+  upperTriangle(x, diag=TRUE, byrow=TRUE)
 
+
   lowerTriangle(x)
   lowerTriangle(x, diag=TRUE)
+  lowerTriangle(x, diag=TRUE, byrow=TRUE)
 
   upperTriangle(x) <- NA
   x
@@ -51,5 +70,11 @@
   lowerTriangle(x, diag=TRUE) <- 1:15
   x
 
+  ## Copy lower triangle into upper triangle to make 
+  ## the matrix (diagonally) symmetric
+  x <- matrix(LETTERS[1:25], nrow=5, ncol=5, byrow=TRUE)
+  x
+  lowerTriangle(x) = upperTriangle(x, byrow=TRUE)
+  x
 }
 \keyword{array}


From noreply at r-forge.r-project.org  Tue Jun 30 00:39:56 2015
From: noreply at r-forge.r-project.org (noreply at r-forge.r-project.org)
Date: Tue, 30 Jun 2015 00:39:56 +0200 (CEST)
Subject: [R-gregmisc-commits] r2054 - pkg/gdata/tests
Message-ID: <20150629223956.49142187A89@r-forge.r-project.org>

Author: warnes
Date: 2015-06-30 00:39:55 +0200 (Tue, 30 Jun 2015)
New Revision: 2054

Modified:
   pkg/gdata/tests/test.humanReadable.Rout.save
   pkg/gdata/tests/test.read.xls.R
   pkg/gdata/tests/test.read.xls.Rout.save
   pkg/gdata/tests/test.reorder.factor.Rout.save
   pkg/gdata/tests/tests.write.fwf.Rout.save
Log:
Add note for R CMD check to help reviewers not freak out when diffs occur because of absence of a PERL library needed to support XLSX files.

Modified: pkg/gdata/tests/test.humanReadable.Rout.save
===================================================================
--- pkg/gdata/tests/test.humanReadable.Rout.save	2015-06-29 22:30:00 UTC (rev 2053)
+++ pkg/gdata/tests/test.humanReadable.Rout.save	2015-06-29 22:39:55 UTC (rev 2054)
@@ -235,4 +235,4 @@
 > 
 > proc.time()
    user  system elapsed 
-  0.390   0.049   0.431 
+  0.414   0.050   0.461 

Modified: pkg/gdata/tests/test.read.xls.R
===================================================================
--- pkg/gdata/tests/test.read.xls.R	2015-06-29 22:30:00 UTC (rev 2053)
+++ pkg/gdata/tests/test.read.xls.R	2015-06-29 22:39:55 UTC (rev 2054)
@@ -30,13 +30,28 @@
 sheetCount(exampleFile)
 
 if( 'XLSX' %in% xlsFormats() )
-  sheetCount(exampleFileX)
+  {
+    sheetCount(exampleFileX)
+  } else {
+      cat("************************************************************\n")
+      cat("** DIFF IN THIS SECTION IS EXPECTED BECAUSE PERL PACKAGES **\n")
+      cat("** FOR SUPPORTING XLSX ARE NOT INSTALLED                  **\n")
+      cat("************************************************************\n")
+  }
 
 sheetNames(exampleFile)
 
 if( 'XLSX' %in% xlsFormats() )
-  sheetNames(exampleFileX)
+  {
+    sheetNames(exampleFileX)
+  } else {
+      cat("************************************************************\n")
+      cat("** DIFF IN THIS SECTION IS EXPECTED BECAUSE PERL PACKAGES **\n")
+      cat("** FOR SUPPORTING XLSX ARE NOT INSTALLED                  **\n")
+      cat("************************************************************\n")
+  }
 
+
 example.1 <- read.xls(exampleFile, sheet=1) # default is first worksheet
 example.1
 
@@ -70,7 +85,7 @@
     data <- read.xls(exampleFileX, sheet="Sheet with initial text", skip=2)
     print(data)
   } else {
-      cat("** DIFF IN THIS SECTION IS EXPECTED BECAUSE PERL PACKAGES **\n")
+    cat("** DIFF IN THIS SECTION IS EXPECTED BECAUSE PERL PACKAGES **\n")
     cat("** FOR SUPPORTING XLSX ARE NOT INSTALLED **\n")
   }
 

Modified: pkg/gdata/tests/test.read.xls.Rout.save
===================================================================
--- pkg/gdata/tests/test.read.xls.Rout.save	2015-06-29 22:30:00 UTC (rev 2053)
+++ pkg/gdata/tests/test.read.xls.Rout.save	2015-06-29 22:39:55 UTC (rev 2054)
@@ -515,7 +515,14 @@
 [1] 4
 > 
 > if( 'XLSX' %in% xlsFormats() )
-+   sheetCount(exampleFileX)
++   {
++     sheetCount(exampleFileX)
++   } else {
++       cat("************************************************************\n")
++       cat("** DIFF IN THIS SECTION IS EXPECTED BECAUSE PERL PACKAGES **\n")
++       cat("** FOR SUPPORTING XLSX ARE NOT INSTALLED                  **\n")
++       cat("************************************************************\n")
++   }
 [1] 4
 > 
 > sheetNames(exampleFile)
@@ -523,10 +530,18 @@
 [3] "Sheet with a very long name!" "Sheet with initial text"     
 > 
 > if( 'XLSX' %in% xlsFormats() )
-+   sheetNames(exampleFileX)
++   {
++     sheetNames(exampleFileX)
++   } else {
++       cat("************************************************************\n")
++       cat("** DIFF IN THIS SECTION IS EXPECTED BECAUSE PERL PACKAGES **\n")
++       cat("** FOR SUPPORTING XLSX ARE NOT INSTALLED                  **\n")
++       cat("************************************************************\n")
++   }
 [1] "Sheet First"                  "Sheet Second"                
 [3] "Sheet with a very long name!" "Sheet with initial text"     
 > 
+> 
 > example.1 <- read.xls(exampleFile, sheet=1) # default is first worksheet
 > example.1
   A  B   C
@@ -611,7 +626,7 @@
 +     data <- read.xls(exampleFileX, sheet="Sheet with initial text", skip=2)
 +     print(data)
 +   } else {
-+       cat("** DIFF IN THIS SECTION IS EXPECTED BECAUSE PERL PACKAGES **\n")
++     cat("** DIFF IN THIS SECTION IS EXPECTED BECAUSE PERL PACKAGES **\n")
 +     cat("** FOR SUPPORTING XLSX ARE NOT INSTALLED **\n")
 +   }
   A  B   C
@@ -883,4 +898,4 @@
 > 
 > proc.time()
    user  system elapsed 
- 13.275   0.831  14.313 
+ 14.560   0.980  15.861 

Modified: pkg/gdata/tests/test.reorder.factor.Rout.save
===================================================================
--- pkg/gdata/tests/test.reorder.factor.Rout.save	2015-06-29 22:30:00 UTC (rev 2053)
+++ pkg/gdata/tests/test.reorder.factor.Rout.save	2015-06-29 22:39:55 UTC (rev 2054)
@@ -53,4 +53,4 @@
 > 
 > proc.time()
    user  system elapsed 
-  0.338   0.050   0.380 
+  0.411   0.059   0.489 

Modified: pkg/gdata/tests/tests.write.fwf.Rout.save
===================================================================
--- pkg/gdata/tests/tests.write.fwf.Rout.save	2015-06-29 22:30:00 UTC (rev 2053)
+++ pkg/gdata/tests/tests.write.fwf.Rout.save	2015-06-29 22:39:55 UTC (rev 2054)
@@ -231,4 +231,4 @@
 > 
 > proc.time()
    user  system elapsed 
-  0.423   0.048   0.462 
+  0.517   0.054   0.583 


From noreply at r-forge.r-project.org  Tue Jun 30 00:40:22 2015
From: noreply at r-forge.r-project.org (noreply at r-forge.r-project.org)
Date: Tue, 30 Jun 2015 00:40:22 +0200 (CEST)
Subject: [R-gregmisc-commits] r2055 - pkg/gdata/inst
Message-ID: <20150629224022.96276187A91@r-forge.r-project.org>

Author: warnes
Date: 2015-06-30 00:40:22 +0200 (Tue, 30 Jun 2015)
New Revision: 2055

Modified:
   pkg/gdata/inst/ChangeLog
Log:
Update ChangeLog

Modified: pkg/gdata/inst/ChangeLog
===================================================================
--- pkg/gdata/inst/ChangeLog	2015-06-29 22:39:55 UTC (rev 2054)
+++ pkg/gdata/inst/ChangeLog	2015-06-29 22:40:22 UTC (rev 2055)
@@ -1,368 +1,254 @@
-2015-04-29  warnes
+2015-06-29  warnes
 
-	* [r1992] tests/test.humanReadable.Rout.save,
+	* [r2054] tests/test.humanReadable.Rout.save,
 	  tests/test.read.xls.R, tests/test.read.xls.Rout.save,
 	  tests/test.reorder.factor.Rout.save,
-	  tests/tests.write.fwf.Rout.save: Apparentely read.csv() needs
-	  different combination of "fileEncoding=`latin1`" and
-	  "encoding=`latin1`" on unix and windows platforms.
-	* [r1991] R/mapLevels.R: In mapLevels(), use sapply() instead of
-	  lapply() to avoid warning message.
-	* [r1990] tests/test.humanReadable.Rout.save,
-	  tests/test.read.xls.R, tests/test.read.xls.Rout.save,
-	  tests/test.reorder.factor.Rout.save,
-	  tests/tests.write.fwf.Rout.save: Displaying all the latin1
-	  characters for diff isn't reliable across platforms. Simply
-	  summarize the latin1 data instead.
-	* [r1989] R/installXLSXsupport.R,
-	  tests/test.humanReadable.Rout.save, tests/test.read.xls.R,
-	  tests/test.read.xls.Rout.save,
-	  tests/test.reorder.factor.Rout.save,
-	  tests/tests.write.fwf.Rout.save: Display read latin1 data so that
-	  diff can catch changes.
+	  tests/tests.write.fwf.Rout.save: Add note for R CMD check to help
+	  reviewers not freak out when diffs occur because of absence of a
+	  PERL library needed to support XLSX files.
+	* [r2053] R/upperTriangle.R, man/upperTriangle.Rd: Add 'byrow'
+	  argument to lowerTriangle()/upperTriangle() functions.
 
+2015-05-02  warnes
+
+	* [r2018] Rename 'trunk' to 'pkg' for compatibility with R-forge
+
+2015-04-29  warnes
+
+	* [r1993] Update ChangeLog and NEWS again.
+	* [r1992] Apparentely read.csv() needs different combination of
+	  "fileEncoding=`latin1`" and "encoding=`latin1`" on unix and
+	  windows platforms.
+	* [r1991] In mapLevels(), use sapply() instead of lapply() to avoid
+	  warning message.
+	* [r1990] Displaying all the latin1 characters for diff isn't
+	  reliable across platforms. Simply summarize the latin1 data
+	  instead.
+	* [r1989] Display read latin1 data so that diff can catch changes.
+
 2015-04-28  warnes
 
-	* [r1988] inst/ChangeLog: Update ChangeLog for gdata 2.16.1
-	* [r1987] inst/NEWS: Update NEWS for gdata 2.16.1
-	* [r1986] NAMESPACE: Remove no-longer defined methods.
-	* [r1985] man/reorder.Rd: Summary: Minor formatting changes, use
-	  rnorm() for X in example, and use set.seed() for consistent
-	  results.
-	* [r1984] man/first.Rd: Summary: Replace unicode single-quote
-	  characters with ASCII ones.
-	* [r1983] R/reorder.R: Summary: Call base::sort instead of sort,
-	  which has been redefined by arguments.
-	* [r1982] inst/ChangeLog, inst/NEWS: Update NEWS and ChangeLog.
-	* [r1981] DESCRIPTION: Bump version number.
-	* [r1980] R/trim.R: Remove CVS header tag.
-	* [r1979] DESCRIPTION: Update version requirement for R (>= 2.3.0)
-	  and perl (5.10.0).
-	* [r1978] R/first.R, R/left.R, man/first.Rd: - first() and last()
-	  are now simply wrappers to utils::head() and
+	* [r1988] Update ChangeLog for gdata 2.16.1
+	* [r1987] Update NEWS for gdata 2.16.1
+	* [r1986] Remove no-longer defined methods.
+	* [r1985] Summary: Minor formatting changes, use rnorm() for X in
+	  example, and use set.seed() for consistent results.
+	* [r1984] Summary: Replace unicode single-quote characters with
+	  ASCII ones.
+	* [r1983] Summary: Call base::sort instead of sort, which has been
+	  redefined by arguments.
+	* [r1982] Update NEWS and ChangeLog.
+	* [r1981] Bump version number.
+	* [r1980] Remove CVS header tag.
+	* [r1979] Update version requirement for R (>= 2.3.0) and perl
+	  (5.10.0).
+	* [r1978] - first() and last() are now simply wrappers to
+	  utils::head() and
 	  utils::tail() with a default 'n=1' instead of 'n=6'.
 	  - Move code for left() and right() into a separate file.
-	* [r1977] R/reorder.R, man/reorder.Rd: If arguments 'X' or 'FUN' is
-	  supplied to reorder.factor(), mimic the
+	* [r1977] If arguments 'X' or 'FUN' is supplied to
+	  reorder.factor(), mimic the
 	  behavior of stats::reorder.default() rather than trying to call
 	  it via
 	  NextMethod.
 
 2015-04-25  warnes
 
-	* [r1974] DESCRIPTION: List needs a conjuction
-	* [r1973] inst/NEWS: Fix spelling errors & typos
-	* [r1972] DESCRIPTION: Fix typographical errors
-	* [r1971] inst/ChangeLog, inst/NEWS: Update NEWS and ChangeLog
-	  (again)
-	* [r1970] NAMESPACE, R/aggregate.table.R: Remove aggregate.table()
-	  entirely
-	* [r1969] tests/test.humanReadable.R,
-	  tests/test.humanReadable.Rout.save,
-	  tests/test.read.xls.Rout.save,
-	  tests/test.reorder.factor.Rout.save,
-	  tests/tests.write.fwf.Rout.save: 'test.humanReadable.R' needed
-	  set.seed() to make the results consistent.
-	* [r1968] tests/test.humanReadable.Rout.save,
-	  tests/test.read.xls.Rout.save,
-	  tests/test.reorder.factor.Rout.save,
-	  tests/tests.write.fwf.Rout.save: Update .save files
-	* [r1967] R/write.fwf.R: Missed on commit.
-	* [r1966] R/write.fwf.R, tests/test.humanReadable.Rout.save,
-	  tests/test.reorder.factor.Rout.save,
-	  tests/tests.write.fwf.Rout.save,
-	  tests/unitTests/runit.write.fwf.R: Modfy write.fwf() to properly
-	  handle matrix argument, avoiding conversion to dataframe unless
-	  rownames=TRUE. Add corresponding unit tests.
-	* [r1965] inst/perl/module_tools.pl: Installing PERL modules was
-	  failing. Adding CPAN configuration option fixed the problem.
-	* [r1964] inst/perl/xls2csv.pl: Error message about executable name
-	  was missing one alternative
-	* [r1963] DESCRIPTION: Better describe gdata contents
-	* [r1962] NAMESPACE: is.* and as.* aren't generics
-	* [r1961] man/humanReadable.Rd, man/object.size.Rd: Add 'justify'
-	  argument to print and format object_sizes methods
-	* [r1960] R/humanReadable.R, R/object.size.R: Add 'justify'
-	  argument to print and format object_sizes methods
-	* [r1959] R/write.fwf.R: Remove stray call to 'browser'
-	* [r1958] DESCRIPTION, inst/ChangeLog, inst/NEWS: Update
-	  DESCRIPTION, ChangeLog, and NEWS
-	* [r1957] NAMESPACE, R/humanReadable.R, R/object.size.R,
-	  man/humanReadable.Rd, man/object.size.Rd,
-	  tests/test.humanReadable.R, tests/test.humanReadable.Rout.save:
-	  Complete work on object.size(), object_sizes methods, and
+	* [r1974] List needs a conjuction
+	* [r1973] Fix spelling errors & typos
+	* [r1972] Fix typographical errors
+	* [r1971] Update NEWS and ChangeLog (again)
+	* [r1970] Remove aggregate.table() entirely
+	* [r1969] 'test.humanReadable.R' needed set.seed() to make the
+	  results consistent.
+	* [r1968] Update .save files
+	* [r1967] Missed on commit.
+	* [r1966] Modfy write.fwf() to properly handle matrix argument,
+	  avoiding conversion to dataframe unless rownames=TRUE. Add
+	  corresponding unit tests.
+	* [r1965] Installing PERL modules was failing. Adding CPAN
+	  configuration option fixed the problem.
+	* [r1964] Error message about executable name was missing one
+	  alternative
+	* [r1963] Better describe gdata contents
+	* [r1962] is.* and as.* aren't generics
+	* [r1961] Add 'justify' argument to print and format object_sizes
+	  methods
+	* [r1960] Add 'justify' argument to print and format object_sizes
+	  methods
+	* [r1959] Remove stray call to 'browser'
+	* [r1958] Update DESCRIPTION, ChangeLog, and NEWS
+	* [r1957] Complete work on object.size(), object_sizes methods, and
 	  humanReadable.
-	* [r1956] inst/perl/Spreadsheet/ParseExcel.pm: Add error message if
-	  Excel file format is too old
+	* [r1956] Add error message if Excel file format is too old
 
 2015-04-23  warnes
 
-	* [r1953] inst/ChangeLog, inst/NEWS: Update NEWS and ChangeLog
-	* [r1952] R/write.fwf.R: - write.fwf() now properly supports matrix
-	  objects, including matrix
+	* [r1953] Update NEWS and ChangeLog
+	* [r1952] - write.fwf() now properly supports matrix objects,
+	  including matrix
 	  objects wihtout column names. (Reported by Carl Witthoft.)
-	* [r1951] inst/perl/xls2csv.pl: Remove 'use POSIX' from xls2csv.pl
-	  since it is no longer needed
-	* [r1939] inst/ChangeLog, inst/NEWS: Update NEWS and ChangeLog
-	* [r1938] R/reorder.R: reorder.factor() now hands off processing to
+	* [r1951] Remove 'use POSIX' from xls2csv.pl since it is no longer
+	  needed
+	* [r1939] Update NEWS and ChangeLog
+	* [r1938] reorder.factor() now hands off processing to
 	  stats:::reorder.default() when either 'X' or 'FUN' is specified.
 
 2015-04-22  warnes
 
-	* [r1937] inst/ChangeLog, inst/NEWS: Update NEWS and ChangeLog for
-	  changes to humanReadable()
-	* [r1936] DESCRIPTION, R/humanReadable.R, R/object.size.R,
-	  man/humanReadable.Rd: Fix 'units' argument of humanReadable()
-	* [r1935] man/object.size.Rd: Update object.size() man page to
-	  reflect change in class of return value from 'object_size' to
-	  'object_sizes'
-	* [r1934] inst/ChangeLog, inst/NEWS: Update NEWS and ChangeLog for
-	  gdata 2.16.0
-	* [r1933] NAMESPACE, R/object.size.R: Modify gdaata:object.size to
-	  generate S3 objects of class 'object_sizes' (note the final 's')
-	  to avoid conflicts with methods in utils for object_size.
-	* [r1932] R/reorder.R, tests/test.reorder.factor.R,
-	  tests/test.reorder.factor.Rout.save: Correct behavior of
-	  reorder.factor() when argument 'X' is supplied by delgating to
-	  stats:::reorder.default()
+	* [r1937] Update NEWS and ChangeLog for changes to humanReadable()
+	* [r1936] Fix 'units' argument of humanReadable()
+	* [r1935] Update object.size() man page to reflect change in class
+	  of return value from 'object_size' to 'object_sizes'
+	* [r1934] Update NEWS and ChangeLog for gdata 2.16.0
+	* [r1933] Modify gdaata:object.size to generate S3 objects of class
+	  'object_sizes' (note the final 's') to avoid conflicts with
+	  methods in utils for object_size.
+	* [r1932] Correct behavior of reorder.factor() when argument 'X' is
+	  supplied by delgating to stats:::reorder.default()
 
 2015-04-14  warnes
 
-	* [r1929] inst/ChangeLog: Update ChangeLog
-	* [r1928] man/write.fwf.Rd: Remove editorializing
-	* [r1927] inst/ChangeLog, inst/NEWS: Update NEWS and ChangeLog for
-	  gdata 2.15.0
-	* [r1926] R/write.fwf.R, man/write.fwf.Rd: Add 'scientific'
-	  argument to write.fwf to allow control of whether numeric values
-	  can be displated using scientific notation.
-	* [r1925] inst/perl/xls2csv.pl: Replace depricated PERL function
-	  POSIX::isnumeric with equivalent regexp
-	* [r1924] inst/ChangeLog: Add gdata ChangeLog to SVN
+	* [r1929] Update ChangeLog
+	* [r1928] Remove editorializing
+	* [r1927] Update NEWS and ChangeLog for gdata 2.15.0
+	* [r1926] Add 'scientific' argument to write.fwf to allow control
+	  of whether numeric values can be displated using scientific
+	  notation.
+	* [r1925] Replace depricated PERL function POSIX::isnumeric with
+	  equivalent regexp
+	* [r1924] Add gdata ChangeLog to SVN
 
 2015-04-10  warnes
 
-	* [r1922] DESCRIPTION, NAMESPACE, inst/NEWS: Update files for gdata
-	  2.15.0
+	* [r1922] Update files for gdata 2.15.0
 
 2015-04-08  warnes
 
-	* [r1919] R/first.R, man/first.Rd, man/left.Rd: Move
-	  first/last/left/right to from gtools to gdata
+	* [r1919] Move first/last/left/right to from gtools to gdata
 
 2014-08-28  warnes
 
-	* [r1883] R/trim.R, inst/NEWS, inst/perl/xls2csv.pl,
-	  inst/xls/ExampleExcelFile.xls, inst/xls/ExampleExcelFile.xlsx,
-	  inst/xls/ExampleExcelFile_1900.xls,
-	  inst/xls/ExampleExcelFile_1900.xlsx,
-	  inst/xls/ExampleExcelFile_1904.xls,
-	  inst/xls/ExampleExcelFile_1904.xlsx, tests/test.read.xls.R,
-	  tests/test.read.xls.Rout.save, tests/tests.write.fwf.Rout.save:
-	  Everything works now!
-	* [r1882] inst/perl/Spreadsheet/ParseExcel/FmtDefault.pm: Suppress
-	  annoying warnings in Spreadsheet::ParseXLS::FmtDefalt.
-	* [r1881] inst/xls/ExampleExcelFile_1900.xls,
-	  inst/xls/ExampleExcelFile_1900.xlsx,
-	  inst/xls/ExampleExcelFile_1904.xls,
-	  inst/xls/ExampleExcelFile_1904.xlsx, tests/test.read.xls.R: Add
-	  tests and corresponding test files for 1900 and 1904 based
-	  XLX/XLSX files
-	* [r1880] inst/perl/Spreadsheet/XLSX,
-	  inst/perl/Spreadsheet/XLSX.pm, inst/perl/install_modules.pl,
-	  inst/perl/module_tools.pl, inst/perl/sheetCount.pl,
-	  inst/perl/supportedFormats.pl: Complete transition from
-	  Spreadsheet::XLSX to Spreadsheet::ParseXLSX
-	* [r1879] inst/perl/xls2csv.pl: Handle Excel files created on the
-	  Mac, where by default Excel uses
+	* [r1883] Everything works now!
+	* [r1882] Suppress annoying warnings in
+	  Spreadsheet::ParseXLS::FmtDefalt.
+	* [r1881] Add tests and corresponding test files for 1900 and 1904
+	  based XLX/XLSX files
+	* [r1880] Complete transition from Spreadsheet::XLSX to
+	  Spreadsheet::ParseXLSX
+	* [r1879] Handle Excel files created on the Mac, where by default
+	  Excel uses
 	  1904-01-01 as the baseline for dates, rather than the usual
 	  1900-01-01.
-	* [r1878] inst/perl/Crypt/.exists, inst/perl/XML/.exists: Remove
-	  dotfiles
-	* [r1877] DESCRIPTION, inst/NEWS: Update for release
-	* [r1876] inst/xls/wide.xls, inst/xls/wide.xlsx: Add test for
-	  handling fo very wide xls and xlsx files.
-	* [r1875] tests/test.read.xls.R: Add test for handling fo very wide
-	  xls and xlsx files.
-	* [r1874] inst/perl/module_tools.pl, inst/perl/sheetCount.pl,
-	  inst/perl/xls2csv.pl: Modify code to use latest version of
+	* [r1878] Remove dotfiles
+	* [r1877] Update for release
+	* [r1876] Add test for handling fo very wide xls and xlsx files.
+	* [r1875] Add test for handling fo very wide xls and xlsx files.
+	* [r1874] Modify code to use latest version of
 	  Spreadsheet::ParseExcel and to replace Spreadsheet::XLSX woth
 	  Spreadsheet::ParseXLSX
-	* [r1873] inst/perl/Crypt, inst/perl/Crypt/.exists,
-	  inst/perl/Crypt/RC4.pm, inst/perl/Digest, inst/perl/Digest/Perl,
-	  inst/perl/Digest/Perl/MD5.pm, inst/perl/Graphics,
-	  inst/perl/Graphics/ColorUtils.pm,
-	  inst/perl/Spreadsheet/ParseExcel.pm,
-	  inst/perl/Spreadsheet/ParseExcel/Cell.pm,
-	  inst/perl/Spreadsheet/ParseExcel/Dump.pm,
-	  inst/perl/Spreadsheet/ParseExcel/FmtDefault.pm,
-	  inst/perl/Spreadsheet/ParseExcel/FmtJapan.pm,
-	  inst/perl/Spreadsheet/ParseExcel/FmtJapan2.pm,
-	  inst/perl/Spreadsheet/ParseExcel/FmtUnicode.pm,
-	  inst/perl/Spreadsheet/ParseExcel/Font.pm,
-	  inst/perl/Spreadsheet/ParseExcel/Format.pm,
-	  inst/perl/Spreadsheet/ParseExcel/SaveParser.pm,
-	  inst/perl/Spreadsheet/ParseExcel/SaveParser/Workbook.pm,
-	  inst/perl/Spreadsheet/ParseExcel/SaveParser/Worksheet.pm,
-	  inst/perl/Spreadsheet/ParseExcel/Utility.pm,
-	  inst/perl/Spreadsheet/ParseExcel/Workbook.pm,
-	  inst/perl/Spreadsheet/ParseExcel/Worksheet.pm,
-	  inst/perl/Spreadsheet/ParseXLSX.pm,
-	  inst/perl/Spreadsheet/XLSX.pm, inst/perl/XML,
-	  inst/perl/XML/.exists, inst/perl/XML/Twig, inst/perl/XML/Twig.pm,
-	  inst/perl/XML/Twig/XPath.pm: Update Spreadsheet::ParseExcel, add
+	* [r1873] Update Spreadsheet::ParseExcel, add
 	  Spreadsheet:ParseXLSX, add dependencies
 
 2014-04-05  warnes
 
-	* [r1801] tests/unitTests/runit.unknown.R: Apply same changes to
-	  NAToUnknown that were previously applied to
+	* [r1801] Apply same changes to NAToUnknown that were previously
+	  applied to
 	  unknownToNA for POSIXlt.
-	* [r1800] inst/NEWS: Update NEWS with latest changes
-	* [r1799] R/nobs.R: Call stats::nobs instead of
-	  stats:::nobs.default within
+	* [r1800] Update NEWS with latest changes
+	* [r1799] Call stats::nobs instead of stats:::nobs.default within
 	  gdata::nobs.default. This avoids R CMD check warning.
-	* [r1798] tests/unitTests/runit.unknown.R: Don't compare optional
-	  POSIXlt field. Explicitly compare POSIXlt, with special handling
-	  of '-1' unknown value.
-	* [r1797] R/mapLevels.R, R/unknown.R: Don't use gdata:::<foo>
-	  prefix to access gdata function <foo>
-	* [r1796] DESCRIPTION: Fix syntax error in DESCRIPTION file.
-	* [r1795] tests/runRUnitTests.R: Package name needs to be defined
-	  outside of if test.
-	* [r1794] vignettes/Rnews.sty: Style file needed
-	* [r1793] R/unknown.R, tests/unitTests/runit.unknown.R: The issue
-	  Brian pointed out was an error in the isUnknown() code, not an
-	  error in the unit tests!
-	* [r1792] tests/unitTests/runit.unknown.R: Apply changes Brian
-	  recommned to NAtoUnknown as well as unknownToNA.
-	* [r1791] inst/NEWS: Update NEWS file
-	* [r1790] inst/doc/Rnews.dtx: Don't need latex .dtx source file
-	* [r1789] inst/doc/mapLevels.Rnw, inst/doc/unknown.Rnw, vignettes,
-	  vignettes/mapLevels.Rnw, vignettes/unknown.Rnw: Move vignettes
-	  from inst/doc/ to vignettes/
-	* [r1788] R/aggregate.table.R, man/aggregate.table.Rd,
-	  man/gdata-defunct.Rd: Change 'aggregate.table' from deprecated to
-	  defunct.
-	* [r1787] DESCRIPTION, inst/unitTests, man/gdata-package.Rd,
-	  tests/runRUnitTests.R, tests/unitTests: Complete changes so that
-	  the unit tests are run as part of R CMD check
-	* [r1786] DESCRIPTION, inst/NEWS: Update NEWS for gdata 2.13.4
-	* [r1785] NAMESPACE: Update NAMESPACE file to remove deleted
-	  function
-	* [r1784] inst/unitTests/Makefile, inst/unitTests/runit.bindData.R,
-	  inst/unitTests/runit.cbindX.R,
-	  inst/unitTests/runit.drop.levels.R,
-	  inst/unitTests/runit.getDateTimeParts.R,
-	  inst/unitTests/runit.mapLevels.R, inst/unitTests/runit.nPairs.R,
-	  inst/unitTests/runit.reorder.factor.R,
-	  inst/unitTests/runit.trim.R, inst/unitTests/runit.trimSum.R,
-	  inst/unitTests/runit.unknown.R,
-	  inst/unitTests/runit.wideByFactor.R,
-	  inst/unitTests/runit.write.fwf.R, tests/Makefile,
-	  tests/runRUnitTests.R, tests/runit.bindData.R,
-	  tests/runit.cbindX.R, tests/runit.drop.levels.R,
-	  tests/runit.getDateTimeParts.R, tests/runit.mapLevels.R,
-	  tests/runit.nPairs.R, tests/runit.reorder.factor.R,
-	  tests/runit.trim.R, tests/runit.trimSum.R, tests/runit.unknown.R,
-	  tests/runit.wideByFactor.R, tests/runit.write.fwf.R: Move unit
-	  test files back to inst/unitTests. Fix up runRUnitTests.R to work
-	  properly in the new location
-	* [r1783] tests/runit.unknown.R: - For unit tests, don't check for
-	  equality of optional POSIXlt
+	* [r1798] Don't compare optional POSIXlt field. Explicitly compare
+	  POSIXlt, with special handling of '-1' unknown value.
+	* [r1797] Don't use gdata:::<foo> prefix to access gdata function
+	  <foo>
+	* [r1796] Fix syntax error in DESCRIPTION file.
+	* [r1795] Package name needs to be defined outside of if test.
+	* [r1794] Style file needed
+	* [r1793] The issue Brian pointed out was an error in the
+	  isUnknown() code, not an error in the unit tests!
+	* [r1792] Apply changes Brian recommned to NAtoUnknown as well as
+	  unknownToNA.
+	* [r1791] Update NEWS file
+	* [r1790] Don't need latex .dtx source file
+	* [r1789] Move vignettes from inst/doc/ to vignettes/
+	* [r1788] Change 'aggregate.table' from deprecated to defunct.
+	* [r1787] Complete changes so that the unit tests are run as part
+	  of R CMD check
+	* [r1786] Update NEWS for gdata 2.13.4
+	* [r1785] Update NAMESPACE file to remove deleted function
+	* [r1784] Move unit test files back to inst/unitTests. Fix up
+	  runRUnitTests.R to work properly in the new location
+	* [r1783] - For unit tests, don't check for equality of optional
+	  POSIXlt
 	  components. (Bug reported by Brian Ripley).
-	* [r1782] R/runRUnitTests.R, inst/unitTests/Makefile,
-	  inst/unitTests/runRUnitTests.R, inst/unitTests/runit.bindData.R,
-	  inst/unitTests/runit.cbindX.R,
-	  inst/unitTests/runit.drop.levels.R,
-	  inst/unitTests/runit.getDateTimeParts.R,
-	  inst/unitTests/runit.mapLevels.R, inst/unitTests/runit.nPairs.R,
-	  inst/unitTests/runit.reorder.factor.R,
-	  inst/unitTests/runit.trim.R, inst/unitTests/runit.trimSum.R,
-	  inst/unitTests/runit.unknown.R,
-	  inst/unitTests/runit.wideByFactor.R,
-	  inst/unitTests/runit.write.fwf.R, man/runRUnitTests.Rd,
-	  tests/Makefile, tests/runRUnitTests.R, tests/runit.bindData.R,
-	  tests/runit.cbindX.R, tests/runit.drop.levels.R,
-	  tests/runit.getDateTimeParts.R, tests/runit.mapLevels.R,
-	  tests/runit.nPairs.R, tests/runit.reorder.factor.R,
-	  tests/runit.trim.R, tests/runit.trimSum.R, tests/runit.unknown.R,
-	  tests/runit.wideByFactor.R, tests/runit.write.fwf.R: Move unit
-	  test code into the (now) standard location
+	* [r1782] Move unit test code into the (now) standard location
 
 2014-03-19  arnima
 
-	* [r1777] R/keep.R: change warning message to R standards
+	* [r1777] change warning message to R standards
 
 2013-12-18  arnima
 
-	* [r1758] R/ll.R: Retain original list order unless sort=FALSE;
-	  also stop if unnamed list
+	* [r1758] Retain original list order unless sort=FALSE; also stop
+	  if unnamed list
 
 2013-12-16  warnes
 
-	* [r1757] R/trim.R: Trim will now remove all types of
-	  leading/trailing whitespace by using
+	* [r1757] Trim will now remove all types of leading/trailing
+	  whitespace by using
 	  the [:blank:] character class.
 
 2013-06-29  warnes
 
-	* [r1692] inst/NEWS: Update NEWS for second try for gdata 2.13.2
-	* [r1691] R/ll.R: Simplify ll() by stuffing list arguments into an
+	* [r1692] Update NEWS for second try for gdata 2.13.2
+	* [r1691] Simplify ll() by stuffing list arguments into an
 	  environment, avoiding the need to use attach/detach.
 
 2013-06-28  warnes
 
-	* [r1685] inst/NEWS: Update NEWS for gdata 2.13.2
-	* [r1684] tests/test.read.xls.Rout.save,
-	  tests/tests.write.fwf.Rout.save: Minor update to
-	  tests/*.Rout.save
-	* [r1683] R/ll.R: Add on.exit() handler to ensure a matching detach
-	  occurs when attach is used in ll()
-	* [r1682] DESCRIPTION: Update for gdata 2.13.2
-	* [r1681] R/aggregate.table.R: Improve deprecated message
+	* [r1685] Update NEWS for gdata 2.13.2
+	* [r1684] Minor update to tests/*.Rout.save
+	* [r1683] Add on.exit() handler to ensure a matching detach occurs
+	  when attach is used in ll()
+	* [r1682] Update for gdata 2.13.2
+	* [r1681] Improve deprecated message
 
 2013-03-24  warnes
 
-	* [r1645] tests/test.read.xls.Rout.save,
-	  tests/tests.write.fwf.Rout.save: Update test files for code
-	  changes
-	* [r1644] inst/NEWS: Fix formatting in NEWS
-	* [r1643] DESCRIPTION, inst/NEWS, man/read.xls.Rd,
-	  man/sheetCount.Rd, tests/test.read.xls.R: Replaced calls to
-	  depreciated function ".path.package" with the new public function
-	  "path.package".
+	* [r1645] Update test files for code changes
+	* [r1644] Fix formatting in NEWS
+	* [r1643] Replaced calls to depreciated function ".path.package"
+	  with the new public function "path.package".
 
 2013-01-14  warnes
 
-	* [r1639] R/installXLSXsupport.R, R/sheetCount.R, R/xls2sep.R,
-	  R/xlsFormats.R: Replace (obsolete) '.path.package' with
-	  'find.package' function.
+	* [r1639] Replace (obsolete) '.path.package' with 'find.package'
+	  function.
 
 2012-09-20  warnes
 
-	* [r1622] man/MedUnits.Rd, man/ans.Rd, man/duplicated2.Rd: Correct
-	  .Rd file errors detected by 'R CMD check'.
-	* [r1621] NAMESPACE: Add duplicated() and ans() to the NAMESPACE.
-	* [r1620] DESCRIPTION, inst/NEWS: Update for gdata 2.13.0.
-	* [r1619] man/ConvertMedUnits.Rd: Fix typographic error.
-	* [r1618] R/ans.R, R/duplicated2.R, man/ans.Rd, man/duplicated2.Rd:
-	  Add 'ans()' and 'duplicated()' contributed by Liviu Andronic.
+	* [r1622] Correct .Rd file errors detected by 'R CMD check'.
+	* [r1621] Add duplicated() and ans() to the NAMESPACE.
+	* [r1620] Update for gdata 2.13.0.
+	* [r1619] Fix typographic error.
+	* [r1618] Add 'ans()' and 'duplicated()' contributed by Liviu
+	  Andronic.
 
 2012-09-19  warnes
 
-	* [r1617] data/MedUnits.rda: Correct column names. Unit columns
-	  were reversed and misspelled.
-	* [r1616] R/sheetCount.R: Add ignore.stderr to system command in
-	  sheetCmd() to prevent stderr
+	* [r1617] Correct column names. Unit columns were reversed and
+	  misspelled.
+	* [r1616] Add ignore.stderr to system command in sheetCmd() to
+	  prevent stderr
 	  messages from being included in the captured output from the perl
 	  script.
 
 2012-09-12  warnes
 
-	* [r1606] DESCRIPTION, inst/NEWS: Update for gdata 2.12.0
-	* [r1605] R/aggregate.table.R, man/aggregate.table.Rd:
-	  'stats::aggregate' was made into a generic on 27-Jan-2010, so
-	  that
+	* [r1606] Update for gdata 2.12.0
+	* [r1605] 'stats::aggregate' was made into a generic on
+	  27-Jan-2010, so that
 	  attempting to call 'aggregate' on a 'table' object will now
 	  incorrectly call 'aggregate.table'. Since 'aggregate.table' can
 	  be
@@ -373,57 +259,47 @@
 	  the 'aggregate.table' function will now display a warning that it
 	  is depreciated and recommending the equivalent call to tapply. It
 	  will be removed entirely in a future version of gdata.
-	* [r1604] .Rinstignore: Don't ignore .Rnw files, but do ignore .svn
-	  files.
+	* [r1604] Don't ignore .Rnw files, but do ignore .svn files.
 
 2012-09-11  warnes
 
-	* [r1603] man/interleave.Rd: Clarify workding of DROP argument to
-	  interleave().
-	* [r1602] man/interleave.Rd: Replace call to aggregate.table() with
-	  equivalent tapply() call since aggregate.table() is being
-	  depreciated.
+	* [r1603] Clarify workding of DROP argument to interleave().
+	* [r1602] Replace call to aggregate.table() with equivalent
+	  tapply() call since aggregate.table() is being depreciated.
 
 2012-08-22  warnes
 
-	* [r1601] DESCRIPTION, inst/NEWS: Update DESCRIPTION and NEWS for
-	  gdate 2.11.1.
-	* [r1600] man/read.xls.Rd: Add example for read.xls() that shows
-	  how to use the fileEncoding
+	* [r1601] Update DESCRIPTION and NEWS for gdate 2.11.1.
+	* [r1600] Add example for read.xls() that shows how to use the
+	  fileEncoding
 	  argument to read in latin-1 encoded data.
-	* [r1599] tests/latin-1.xls, tests/test.read.xls.R,
-	  tests/test.read.xls.Rout.save: Add XLSX test for latin-1
-	  characters, and look for them in their new
+	* [r1599] Add XLSX test for latin-1 characters, and look for them
+	  in their new
 	  location in inst/xls/.
-	* [r1598] inst/xls/latin-1.xls, inst/xls/latin-1.xlsx: add XLSX
-	  version of latin-1.xls
-	* [r1597] tests/latin-1.xls, tests/test.read.xls.R,
-	  tests/test.read.xls.Rout.save: Add test file and code to ensure
-	  that read.xls() can properly handle
+	* [r1598] add XLSX version of latin-1.xls
+	* [r1597] Add test file and code to ensure that read.xls() can
+	  properly handle
 	  files with alternative encodings. latin-1.xls contains each of
 	  the
 	  non-ascii latin-1 special characters in both the column headings
 	  and
 	  the body of the file.
-	* [r1596] R/read.xls.R: Change code to have R read the csv/tab data
-	  from the file rather than
+	* [r1596] Change code to have R read the csv/tab data from the file
+	  rather than
 	  from the connetion we made, so that file encodings can be
 	  properly handled.
-	* [r1595] R/read.xls.R: Always close the connection.
+	* [r1595] Always close the connection.
 
 2012-08-13  warnes
 
-	* [r1594] inst/perl/xls2csv.pl: Remove trailing space from output
-	  line.
+	* [r1594] Remove trailing space from output line.
 
 2012-06-18  warnes
 
-	* [r1567] inst/NEWS: Update NEWS for 2.11.0 release.
-	* [r1566] DESCRIPTION: Bump version number and add
-	  SystemRequirements for perl.
-	* [r1565] R/xls2sep.R, inst/perl/xls2csv.pl, man/read.xls.Rd,
-	  tests/test.read.xls.R, tests/test.read.xls.Rout.save: read.xls()
-	  and supporting functions now allow blank lines to be
+	* [r1567] Update NEWS for 2.11.0 release.
+	* [r1566] Bump version number and add SystemRequirements for perl.
+	* [r1565] read.xls() and supporting functions now allow blank lines
+	  to be
 	  preserved, rather than skipped, by supplying the argument
 	  "blank.lines.skip=FALSE". The underlying perl function has been
 	  extended to suppor this via an optional "-s" argument which, when
@@ -431,384 +307,249 @@
 
 2012-06-13  warnes
 
-	* [r1564] DESCRIPTION, R/nobs.R, inst/NEWS: - nobs.default needs to
-	  handle logical vectors in addition to numeric
+	* [r1564] - nobs.default needs to handle logical vectors in
+	  addition to numeric
 	  vectors.
 	  - update DESCRIPTION and NEWS for 2.10.6.
-	* [r1563] R/nobs.R: nobs.default needs to handle logical as well as
-	  numeric vectors.
+	* [r1563] nobs.default needs to handle logical as well as numeric
+	  vectors.
 
 2012-06-08  warnes
 
-	* [r1562] DESCRIPTION, tests/test.read.xls.Rout.save: Update
-	  DESCRIPTION and tests
-	* [r1561] tests/test.read.xls.R: fix incorrect function name
-	* [r1560] DESCRIPTION, man/installXLSXsupport.Rd: Mark example for
-	  installXLSXsupport() to not be executed durin R CMD check.
-	* [r1559] DESCRIPTION: stats:::nobs.default and stats::nobs.lm
-	  require R > 2.13.0, so add this as a dependency.
+	* [r1562] Update DESCRIPTION and tests
+	* [r1561] fix incorrect function name
+	* [r1560] Mark example for installXLSXsupport() to not be executed
+	  durin R CMD check.
+	* [r1559] stats:::nobs.default and stats::nobs.lm require R >
+	  2.13.0, so add this as a dependency.
 
 2012-06-06  warnes
 
-	* [r1552] DESCRIPTION, inst/NEWS: Update for release 2.10.2
-	* [r1551] R/nobs.R: Fix bugs in nobs.default.
-	* [r1550] tests/test.read.xls.Rout.save,
-	  tests/tests.write.fwf.Rout.save: Update to reflect warning on
-	  startup that 'nobs' hides 'stats::nobs'.
-	* [r1549] man/nobs.Rd: Remove stray non-ASCII characters.
-	* [r1548] R/nobs.R: The nobs() dispatch method must be defined in
-	  the gdata namespace to
+	* [r1552] Update for release 2.10.2
+	* [r1551] Fix bugs in nobs.default.
+	* [r1550] Update to reflect warning on startup that 'nobs' hides
+	  'stats::nobs'.
+	* [r1549] Remove stray non-ASCII characters.
+	* [r1548] The nobs() dispatch method must be defined in the gdata
+	  namespace to
 	  pick up the definition of gdata::nobs.default.
-	* [r1547] DESCRIPTION, inst/NEWS: Update DESCRIPTION and NEWS for
-	  2.10.1 release.
-	* [r1546] NAMESPACE, R/nobs.R, man/nobs.Rd: Define aliases for
-	  'nobs' and 'nobs.lm' to support backward
+	* [r1547] Update DESCRIPTION and NEWS for 2.10.1 release.
+	* [r1546] Define aliases for 'nobs' and 'nobs.lm' to support
+	  backward
 	  compatibility for packages depending on gdata.
-	* [r1545] DESCRIPTION, inst/NEWS: Update DESCRIPTION and NEWS for
-	  2.10.0 release
-	* [r1544] NAMESPACE, R/startsWith.R, man/startsWith.Rd: - Add
-	  manual page and NAMESPACE entry for startsWith().
+	* [r1545] Update DESCRIPTION and NEWS for 2.10.0 release
+	* [r1544] - Add manual page and NAMESPACE entry for startsWith().
 	  - Add 'ignore.case' argument to startsWith().
-	* [r1543] tests/test.read.xls.Rout.save: Update to match new code.
-	* [r1542] man/read.xls.Rd: Replace non-ASCII characters.
-	* [r1541] R/read.xls.R, man/read.xls.Rd, tests/test.read.xls.R: Add
-	  na.strings to read.xls call to convert "#DIV/0!" to NA.
+	* [r1543] Update to match new code.
+	* [r1542] Replace non-ASCII characters.
+	* [r1541] Add na.strings to read.xls call to convert "#DIV/0!" to
+	  NA.
 
 2012-06-05  warnes
 
-	* [r1540] NAMESPACE: Remove nobs method dispatch and lm methods
-	  since these are now provided by the stats package.
-	* [r1539] R/env.R: Spell out arguments to ls() to avoid R CMD check
+	* [r1540] Remove nobs method dispatch and lm methods since these
+	  are now provided by the stats package.
+	* [r1539] Spell out arguments to ls() to avoid R CMD check
 	  warnings.
-	* [r1538] .Rinstignore: Add .Rinstignore file to omit latex style
-	  and source files from distributed inst/doc directory.
-	* [r1537] R/ConvertMedUnits.R: - Add NULL definition of MedUnits to
-	  avoid R CMD check warning.
+	* [r1538] Add .Rinstignore file to omit latex style and source
+	  files from distributed inst/doc directory.
+	* [r1537] - Add NULL definition of MedUnits to avoid R CMD check
+	  warning.
 	  - Specify local environment when calling data() so that MedUnits
 	  gets
 	  defined in the function's environment rather than the global
 	  environment.
-	* [r1536] R/ls.funs.R: Fix error in ls.funs() that occurs when
-	  there are no objects in the environment.
-	* [r1535] R/object.size.R: Avoid warning by calling
-	  utils::object.size rather than Internal(object.size(x))
+	* [r1536] Fix error in ls.funs() that occurs when there are no
+	  objects in the environment.
+	* [r1535] Avoid warning by calling utils::object.size rather than
+	  Internal(object.size(x))
 
 2012-05-31  warnes
 
-	* [r1534] R/nobs.R, man/nobs.Rd: - Remove dispatch function 'nobs'
-	  and method 'nobs.lm' since these are
+	* [r1534] - Remove dispatch function 'nobs' and method 'nobs.lm'
+	  since these are
 	  now provided by the R 'stats' package.
 
 2012-05-04  warnes
 
-	* [r1532] DESCRIPTION: Update for next release
-	* [r1531] NAMESPACE, R/ls.funs.R, man/ls.funs.Rd: Add ls.funs() to
-	  show functions defined in the specified environment.
-	* [r1530] man/is.what.Rd: Fix enumerate syntax.
+	* [r1532] Update for next release
+	* [r1531] Add ls.funs() to show functions defined in the specified
+	  environment.
+	* [r1530] Fix enumerate syntax.
 
 2012-04-03  warnes
 
-	* [r1522] R/startsWith.R: Add startsWith() function.
+	* [r1522] Add startsWith() function.
 
 2011-10-05  warnes
 
-	* [r1516] man/read.xls.Rd: Fix typo
+	* [r1516] Fix typo
 
 2011-09-30  warnes
 
-	* [r1515] inst/NEWS: Update DESCRIPTION and README for 2.9.0
-	  release.
-	* [r1514] DESCRIPTION: Update DESCRIPTION and README for 2.9.0
-	  release.
[TRUNCATED]

To get the complete diff run:
    svnlook diff /svnroot/r-gregmisc -r 2055